mRNA_4991 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348409
Unique Name	mRNA_4991
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A836CGU0_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGU0_9STRA)

HSP 1 Score: 956 bits (2472), Expect = 0.000e+0
Identity = 655/655 (100.00%), Postives = 655/655 (100.00%), Query Frame = 1

Query:    1 MGRLAMVLALAACADPAYELHWHVPAAFGSDVRVDKERLILASPADACTPLSNAHKLAGNVALVTRGGCNFTEKVLQAQRCGAKAVIVGDTSNDADCPCAXXXXXXXXXXXXXWAVIMSGSAAETAPITIPAVFVSAPTAALLRDLLREEAHLARRAALRRAPAAAAAAAHTVLDHVAGAAVLVAGAPVFAITWALPPPPLPFLMRSGWGGCARRRDAAPAARTKIEAALDAVAGRIPCALSSTFGACFELAVGARGVVDAASDALRDPAESLNAAGAHVRHAIVDGLTTLLPATPDPADAAAAKRAAXXXXPRPTAGALLRXXXXXXXXXXXXXXRAVACPLATVLPAETDPEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAARRAAGXXXXXXXXXXXXXXXXXXXXRAALPHVSVSIDARGAVLPAAARDSGGAFVFRGGGALSPLGAAVLYAIASLALLAATSAGAAARDCAVGRLATRRFSSAAXXXXXXXXXXXXXXXXXXXXXXXXXGGLVGDLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDALGERPPRGAHSRRPSWAPAAAAAALGGAVPSPFELGDAFAAHGFSALLCSVLIVLLLTCATQG 1965
            MGRLAMVLALAACADPAYELHWHVPAAFGSDVRVDKERLILASPADACTPLSNAHKLAGNVALVTRGGCNFTEKVLQAQRCGAKAVIVGDTSNDADCPCAXXXXXXXXXXXXXWAVIMSGSAAETAPITIPAVFVSAPTAALLRDLLREEAHLARRAALRRAPAAAAAAAHTVLDHVAGAAVLVAGAPVFAITWALPPPPLPFLMRSGWGGCARRRDAAPAARTKIEAALDAVAGRIPCALSSTFGACFELAVGARGVVDAASDALRDPAESLNAAGAHVRHAIVDGLTTLLPATPDPADAAAAKRAAXXXXPRPTAGALLRXXXXXXXXXXXXXXRAVACPLATVLPAETDPEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAARRAAGXXXXXXXXXXXXXXXXXXXXRAALPHVSVSIDARGAVLPAAARDSGGAFVFRGGGALSPLGAAVLYAIASLALLAATSAGAAARDCAVGRLATRRFSSAAXXXXXXXXXXXXXXXXXXXXXXXXXGGLVGDLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDALGERPPRGAHSRRPSWAPAAAAAALGGAVPSPFELGDAFAAHGFSALLCSVLIVLLLTCATQG
Sbjct:    1 MGRLAMVLALAACADPAYELHWHVPAAFGSDVRVDKERLILASPADACTPLSNAHKLAGNVALVTRGGCNFTEKVLQAQRCGAKAVIVGDTSNDADCPCAXXXXXXXXXXXXXWAVIMSGSAAETAPITIPAVFVSAPTAALLRDLLREEAHLARRAALRRAPAAAAAAAHTVLDHVAGAAVLVAGAPVFAITWALPPPPLPFLMRSGWGGCARRRDAAPAARTKIEAALDAVAGRIPCALSSTFGACFELAVGARGVVDAASDALRDPAESLNAAGAHVRHAIVDGLTTLLPATPDPADAAAAKRAAXXXXPRPTAGALLRXXXXXXXXXXXXXXRAVACPLATVLPAETDPEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAARRAAGXXXXXXXXXXXXXXXXXXXXRAALPHVSVSIDARGAVLPAAARDSGGAFVFRGGGALSPLGAAVLYAIASLALLAATSAGAAARDCAVGRLATRRFSSAAXXXXXXXXXXXXXXXXXXXXXXXXXGGLVGDLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDALGERPPRGAHSRRPSWAPAAAAAALGGAVPSPFELGDAFAAHGFSALLCSVLIVLLLTCATQG 655

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BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A024UE84_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UE84_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.390e-13
Identity = 52/134 (38.81%), Postives = 67/134 (50.00%), Query Frame = 1

Query:   46 PAYELHWHVPAAFGS--DVRVDKERLILASPADACTPLSNAHKLAGNVALVTRGGCNFTEKVLQAQRCGAKAVIVGDTSNDADCPCAXXXXXXXXXXXXXWAVIMSGSAAETAPITIPAVFVSAPTAALLRDLL 441
            P   +  HVPA FG+     V+K  L+   P DAC+ + N   +AG VAL+ RG CNF  KVLQAQ  GAKAV+V D+ +  +                 W V M G A     + IP+VFVS      L DL+
Sbjct:   29 PCCHVERHVPARFGNFYPKDVNKLELVAVRPFDACSRIRN--DIAGKVALMARGNCNFAHKVLQAQVAGAKAVVVMDSEHRVN---------------TSWVVTMIGDAGNATQVVIPSVFVSRAIGLRLLDLM 145

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BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A6G0ZAH2_APHCR (Protein goliath isoform X3 n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0ZAH2_APHCR)

HSP 1 Score: 76.6 bits (187), Expect = 6.470e-13
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1

Query: 1621 LVGDLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDAL 1779
            +VGD  CC++C++ YR  + V  LPCRH+FHK CV PWL+    CP+CK D L
Sbjct:   75 IVGDGDCCAVCIEPYRPSEVVRILPCRHEFHKSCVDPWLLEHRTCPMCKMDIL 127

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BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A0M3J117_ANISI (Protein goliath (inferred by orthology to a D. melanogaster protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3J117_ANISI)

HSP 1 Score: 75.9 bits (185), Expect = 1.810e-12
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 1

Query: 1642 CSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDALGER 1788
            C +C+D YR GD V ALPCRH FHK CV PWL+    CP+CKSD L  R
Sbjct:   66 CPVCIDPYRTGDIVRALPCRHVFHKTCVDPWLLEHRTCPMCKSDILKVR 114

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BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A6I8P6D3_ORNAN (RING-type domain-containing protein n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8P6D3_ORNAN)

HSP 1 Score: 78.2 bits (191), Expect = 2.190e-12
Identity = 42/100 (42.00%), Postives = 53/100 (53.00%), Query Frame = 1

Query: 1624 VGDLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDALGERPPRGAHSRRPSWAPAAAAAALGGAVPSPFELGDAFAAHGFSALLC 1923
            V D+  C++CLD +     +  LPC H+FH+DCV PWL+    CPLCK + LGE P   A S RP      AAAA      +  E GDA +  GF    C
Sbjct:  141 VPDIQTCAVCLDRFCKNQFLRVLPCLHEFHRDCVDPWLLLQQTCPLCKHNILGEPPDPEAESGRPGRRAGPAAAAA----KAKEESGDAASPSGFPTGSC 236

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BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A7S1YXL5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YXL5_TRICV)

HSP 1 Score: 75.1 bits (183), Expect = 3.110e-12
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1

Query: 1630 DLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLV-RGGLCPLCKSD 1773
            D GCC+IC++DY DGD +  LPCRH FH DC+ PWL  R   CPLCK++
Sbjct:   93 DEGCCTICIEDYGDGDVLCVLPCRHAFHYDCILPWLTERSPTCPLCKAE 141

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BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A8D0F6B5_STROC (RING-type domain-containing protein n=2 Tax=Neognathae TaxID=8825 RepID=A0A8D0F6B5_STROC)

HSP 1 Score: 74.7 bits (182), Expect = 5.820e-12
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1

Query: 1630 DLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDALGERPPRGAH 1806
            ++  C++CLD +     +  LPC H+FH+DCV PWL+    CPLCK + LGE PP GA 
Sbjct:   89 EIDSCAVCLDQFHKSQWLRVLPCSHEFHRDCVDPWLLLQQTCPLCKRNILGESPPLGAR 147

[Close]

BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A5E4MWD5_9HEMI (RING-type domain-containing protein n=2 Tax=Cinara cedri TaxID=506608 RepID=A0A5E4MWD5_9HEMI)

HSP 1 Score: 79.0 bits (193), Expect = 5.990e-12
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1

Query: 1621 LVGDLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDAL 1779
            +VGD  CC++CL+ Y+  D V  LPCRH+FHK CV PWL+    CP+CK D L
Sbjct:  269 IVGDCDCCAVCLEPYKPSDVVRILPCRHEFHKSCVDPWLLEHRTCPMCKMDIL 321

[Close]

BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A6G0TEQ3_APHGL (RING-type domain-containing protein (Fragment) n=2 Tax=Aphidini TaxID=33387 RepID=A0A6G0TEQ3_APHGL)

HSP 1 Score: 76.6 bits (187), Expect = 7.210e-12
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1

Query: 1621 LVGDLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDAL 1779
            +VGD  CC++C++ YR  + V  LPCRH+FHK CV PWL+    CP+CK D L
Sbjct:   73 IVGDGDCCAVCIEPYRPSEVVRILPCRHEFHKSCVDPWLLEHRTCPMCKMDIL 125

[Close]

BLAST of jgi.p|Trimin1|348409 vs. uniprot
Match: A0A0K9RC92_SPIOL (RING-type domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RC92_SPIOL)

HSP 1 Score: 76.3 bits (186), Expect = 7.480e-12
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 1

Query: 1630 DLGCCSICLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSD 1773
            D+G C IC   YR+ D VT LPC HQ+HKDC++PWLV+  +CPLCK +
Sbjct:  181 DIGDCVICCTAYRNRDSVTTLPCAHQYHKDCIEPWLVKKRICPLCKKE 228

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348409 vs. uniprot

BLAST of jgi.p|Trimin1|348409 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CGU0_9STRA	0.000e+0	100.00	RING-type domain-containing protein n=1 Tax=Tribon...	[more]
A0A024UE84_9STRA	3.390e-13	38.81	PA domain-containing protein n=1 Tax=Aphanomyces i...	[more]
A0A6G0ZAH2_APHCR	6.470e-13	52.83	Protein goliath isoform X3 n=1 Tax=Aphis craccivor...	[more]
A0A0M3J117_ANISI	1.810e-12	61.22	Protein goliath (inferred by orthology to a D. mel...	[more]
A0A6I8P6D3_ORNAN	2.190e-12	42.00	RING-type domain-containing protein n=1 Tax=Ornith...	[more]
A0A7S1YXL5_TRICV	3.110e-12	59.18	Hypothetical protein (Fragment) n=1 Tax=Trieres ch...	[more]
A0A8D0F6B5_STROC	5.820e-12	47.46	RING-type domain-containing protein n=2 Tax=Neogna...	[more]
A0A5E4MWD5_9HEMI	5.990e-12	54.72	RING-type domain-containing protein n=2 Tax=Cinara...	[more]
A0A6G0TEQ3_APHGL	7.210e-12	52.83	RING-type domain-containing protein (Fragment) n=2...	[more]
A0A0K9RC92_SPIOL	7.480e-12	58.33	RING-type domain-containing protein n=1 Tax=Spinac...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_23	contig	Contig_23:1176527..1181607 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348409\|estExt_Genemark1.C_Ctg_230138
Preferred name	RNF150
Description	PA domain
COG category	O
Max annot lvl	33208\|Metazoa
EggNOG OGs	KOG0800@1\|root,KOG0800@2759\|Eukaryota,390PJ@33154\|Opisthokonta,3BHU7@33208\|Metazoa,3CS08@33213\|Bilateria,42A42@6656\|Arthropoda,3SZJM@50557\|Insecta,3EC6V@33342\|Paraneoptera
Evalue	7.54e-12
Seed ortholog	7029.ACYPI009067-PA
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	Zinc finger, RING-type
Ec32 ortholog	Ec-27_000830.1
TranscriptId	348731
Track	FilteredModels1
ProteinId	348409

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348409	gene_4991	Tribonema minus UTEX_B_3156	gene	Contig_23 1176527..1181607 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348409	Trimin1\|348409\|estExt_Genemark1.C_Ctg_230138	Tribonema minus UTEX_B_3156	polypeptide	Contig_23 1176527..1181414 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4991_1	exon_4991_1	Tribonema minus UTEX_B_3156	exon	Contig_23 1176527..1176565 +
exon_4991_2	exon_4991_2	Tribonema minus UTEX_B_3156	exon	Contig_23 1176611..1176688 +
exon_4991_3	exon_4991_3	Tribonema minus UTEX_B_3156	exon	Contig_23 1178041..1178213 +
exon_4991_4	exon_4991_4	Tribonema minus UTEX_B_3156	exon	Contig_23 1178342..1178392 +
exon_4991_5	exon_4991_5	Tribonema minus UTEX_B_3156	exon	Contig_23 1178770..1179916 +
exon_4991_6	exon_4991_6	Tribonema minus UTEX_B_3156	exon	Contig_23 1179955..1180166 +
exon_4991_7	exon_4991_7	Tribonema minus UTEX_B_3156	exon	Contig_23 1180688..1180747 +
exon_4991_8	exon_4991_8	Tribonema minus UTEX_B_3156	exon	Contig_23 1181207..1181607 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4991	CDS_4991	Tribonema minus UTEX_B_3156	CDS	Contig_23 1176527..1176565 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_4991	UTR3_4991	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_23 1181415..1181607 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_23:1176527..1181607+
coding sequence from alignment at Contig_23:1176527..1181607+

spliced messenger RNA

>mRNA_4991 ID=mRNA_4991|Name=jgi.p|Trimin1|348409|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2161bp|location=Sequence derived from alignment at Contig_23:1176527..1181607+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAGGCTGGCGATGGTGCTTGCTCTGGCGGCGTGTGCCGACCCTGC
TTATGAGCTGCATTGGCACGTGCCTGCTGCCTTCGGCTCGGACGTCAGGG
TAGACAAGGAGAGGCTGATCCTGGCGAGCCCGGCGGATGCGTGCACACCG
CTGAGCAATGCGCACAAGCTGGCCGGCAACGTGGCGCTCGTCACGCGCGG
CGGCTGCAACTTTACGGAAAAGGTGCTGCAGGCGCAGCGCTGCGGCGCCA
AGGCGGTCATCGTCGGGGACACGTCCAACGACGCTGACTGTCCCTGCGCC
AAGGCGGTCATCGTCGGGGACACGTCCAACGAGGCTGACTGGGCTGTCAT
CATGTCTGGCTCCGCCGCCGAAACCGCCCCCATCACCATCCCCGCCGTCT
TCGTCAGCGCGCCCACCGCCGCGCTGCTGCGCGACCTGCTGCGCGAGGAG
GCGCATCTCGCGCGCCGCGCTGCGCTGCGCCGCGCCCCCGCCGCCGCCGC
CGCCGCCGCGCACACCGTCCTGGACCACGTCGCGGGCGCGGCGGTGCTCG
TCGCCGGCGCCCCCGTCTTCGCCATCACGTGGGCGCTGCCGCCGCCGCCG
CTGCCGTTCCTGATGCGCAGCGGCTGGGGGGGGTGCGCGCGCCGCCGTGA
CGCCGCCCCCGCCGCCAGGACGAAAATCGAGGCCGCGCTCGATGCCGTCG
CCGGCCGCATCCCGTGCGCGCTCTCGTCCACTTTCGGCGCCTGCTTCGAG
CTCGCCGTCGGAGCGCGCGGCGTCGTCGACGCGGCGTCGGACGCGCTGCG
CGACCCCGCGGAATCGCTCAACGCCGCAGGCGCGCACGTGCGCCACGCCA
TCGTCGACGGCCTGACCACGCTGCTGCCCGCCACGCCCGATCCCGCGGAC
GCTGCCGCCGCGAAACGCGCCGCCGCCGCCGCCGCGCCGCGCCCCACCGC
CGGCGCGCTGCTGCGTGACGCTGCGGCGTCCATCCGCGCCGCCGCAGCGC
ACGCGCGGCGCGCCGTCGCCTGCCCCCTGGCCACGGTGCTGCCCGCCGAG
ACCGACCCCGAGGTCGCCGCCGCCGCGCCGCGCCCCACCGCCGGCGCGCT
GCTGCGTGACGCTGCGGCGTCCATCCGCGCCGCCGCAGCGCACGCGCGGC
GCGCCGTCGCCCGCCCCCTGGCCGCGGTGCTGCCCGCCAAGACCGACCCC
GAGGTCGCCGCCGCCGCCGCCGCGCGCCGCGCCGCCGGCGCCGCCGGCGC
GCCGCCCCCCGCCGCCGCCGCCGCCGCGCGCTTCGCCGCCGCCGCGGCGC
GCGCCGCGCTGCCGCACGTGTCCGTCTCCATCGACGCGCGCGGCGCCGTG
CTGCCGGCGGCGGCGCGCGACAGCGGCGGCGCCTTTGTGTTCCGCGGCGG
CGGCGCGCTGTCGCCGCTGGGCGCCGCCGTGCTGTACGCCATCGCGTCGC
TGGCGCTGCTGGCGGCGACGAGCGCGGGGGCGGCGGCGCGCGACTGCGCG
GTGGGGCGGCTGGCGACGCGGCGCTTTTCGAGCGCTGCTGCTGCTGCCGC
CGCCGCTGCGGGTGGTGGTGAAGGTGTGGCGGGGGAGGGAGAGGGGGAGG
GGGAAGGGCAGGGGGGGGGGCTTGTGGGGGATCTGGGCTGCTGCTCCATA
TGCCTGGATGATTACAGGGATGGGGATGATGTGACGGCACTGCCGTGCAG
GCACCAGTTCCACAAGGACTGCGTTCAGCCGTGGCTGGTGCGCGGCGGCC
TGTGCCCACTGTGCAAGTCGGACGCGCTGGGAGAGCGCCCCCCCCGCGGC
GCGCATTCGCGCAGGCCCTCATGGGCCCCTGCCGCAGCAGCAGCAGCGCT
CGGCGGCGCGGTGCCCTCGCCCTTTGAGCTGGGCGACGCATTTGCCGCGC
ACGGCTTCTCCGCGCTCCTGTGCTCAGTGCTCATCGTGCTGCTGCTCACG
TGCGCGACGCAAGGGTAGAGGGGGGTTGAATCGCTTGCCCCCCCCCCCCC
CCCCCCTCCATGTTGACCCACTTGTCGACGAAGCTCTGTGTTGCAACCTG
GCTCGCACCGGCTTGCGAAGCAGGGTTGGAGGGGGTCGATTGCGTGCCCC
CCCCCCCCCGCACACACACAAAATGTGCCCAGCAGTCGACGACACTCCCC
GTGCTTCCCCC

protein sequence of jgi.p|Trimin1|348409

>Trimin1|348409|estExt_Genemark1.C_Ctg_230138 ID=Trimin1|348409|estExt_Genemark1.C_Ctg_230138|Name=jgi.p|Trimin1|348409|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=656bp
MGRLAMVLALAACADPAYELHWHVPAAFGSDVRVDKERLILASPADACTP
LSNAHKLAGNVALVTRGGCNFTEKVLQAQRCGAKAVIVGDTSNDADCPCA
KAVIVGDTSNEADWAVIMSGSAAETAPITIPAVFVSAPTAALLRDLLREE
AHLARRAALRRAPAAAAAAAHTVLDHVAGAAVLVAGAPVFAITWALPPPP
LPFLMRSGWGGCARRRDAAPAARTKIEAALDAVAGRIPCALSSTFGACFE
LAVGARGVVDAASDALRDPAESLNAAGAHVRHAIVDGLTTLLPATPDPAD
AAAAKRAAAAAAPRPTAGALLRDAAASIRAAAAHARRAVACPLATVLPAE
TDPEVAAAAPRPTAGALLRDAAASIRAAAAHARRAVARPLAAVLPAKTDP
EVAAAAAARRAAGAAGAPPPAAAAAARFAAAAARAALPHVSVSIDARGAV
LPAAARDSGGAFVFRGGGALSPLGAAVLYAIASLALLAATSAGAAARDCA
VGRLATRRFSSAAAAAAAAAGGGEGVAGEGEGEGEGQGGGLVGDLGCCSI
CLDDYRDGDDVTALPCRHQFHKDCVQPWLVRGGLCPLCKSDALGERPPRG
AHSRRPSWAPAAAAAALGGAVPSPFELGDAFAAHGFSALLCSVLIVLLLT
CATQG*

mRNA from alignment at Contig_23:1176527..1181607+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4991 ID=mRNA_4991|Name=jgi.p|Trimin1|348409|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5081bp|location=Sequence derived from alignment at Contig_23:1176527..1181607+ (Tribonema minus UTEX_B_3156 )
ATGGGGAGGCTGGCGATGGTGCTTGCTCTGGCGGCGTGTGTACGTGGGGG
CAGGGCTTTGGTGATACATGCCCTGCCAGGCCAGGCCGACCCTGCTTATG
AGCTGCATTGGCACGTGCCTGCTGCCTTCGGCTCGGACGTCAGGGTAGAC
AAGGAGAGGCTGGTGAGCATAAAAAAATTCGCAACGTGTCACATCACCGT
GCTTCTGTTGCGTTGCTGTAGTAGTGTGTGATGGCGTCGCCTTCGGAGCA
TACGCTGCCTACATGCATCACATGTGGCGCACACTTGATTTCATCCCGCT
AATCAGTGCTGCCAGCTGCCGGGCAGGCGTGACGCAATTCTGCTCTGCTG
TATATTTGACTGATTATAGGCCCACCAGTGCTTCGGAGGTAGAGCAGCTA
TGTTGGATCTTCTTAAGCGTTGCACGTTTTAGTTCTCTTTCGCTTCGCCT
GCTGTGCCGAATCCTACTGATATGGTGGTCAAAACCGAGAACAGCATGTA
AACGCTGGCTCTTTCACGCCTTCGCGTACTGTGTGCGCTGTAAATCAGCT
ATTCAAACTCCTCTGTGATCAGGGCGCCGGCACATTGCCGGCACCTTTGT
CTGCCAAGAGGGCAGGAGGATACCACCACAGTTGAAGATGACGGGCAGGG
GGCATCCCCATGTTGAAGTTCGCAGTTGCTGCTGCAGTTGATCCTGTTGT
AGAAGGGCTAGCATGTCGTGTGCGACACACTCAAACCACAACAAAGTCGG
CAGATCAGAATCGAGCCGCTGGCGCACGGTGCACAAAGCATTGCTCAGCA
GCAGCAACAGCTGACAGATGATCACAATTTGTCGTGTGTTTGGCGTGCAG
TGAGAATCTTCGCCGCGTGGCACCAGTAGACTGGCGATCATATCCAGGGT
TATACTTCGAAACCGGCGCACTTCAATGTACACCTGCGGTTTGTGTACAT
GGCACACTGTCATGTCCTTCGATCTCTTGTCTCTACAAATGCAGACAGGT
TGCATGCTCTGCACACTCTACTTCTTGCGTGCTGCAAGCGTAGGTATAGC
ACGCGGATCTGTTGGGTCGTTTGTGGCGGTACCCGCGGGAACTTCCTGCA
CCTGACCAACTCAAGTGCTCTAAAGCACTTCAACCAGTGACGCACCTCCA
ATCCAAAACTGCACTTGCCGTCACGGGGCACGCTGGCGAGCAATACGCAC
AAGTCGGAATGAAGTTGTACGCACTTCAACCTGCGACGCACCTCCAATAG
ACACTTCCCTGTCACACAGATTATGGCGAATGCGGCAGACGCGTGCACGC
CGCTGCACAATGCGCACACGCTGGTTTGAAGTTGTACGCACTTCAACCAG
TGAGTCAGTGACGCACCTTCGGTACACACTATTCCCTGTCACACAGATCC
TGGCGAGCACTACGGACGTGTGCGCGCCGCTGAGCAATGCGCACAAGCTG
GTTTTGAAGTCGTAGACACTTCAATCAGTGACACACCTCAAATTCAATAT
CCTTCGCATCGCAGATCCTGGCGAGCCCGGCGGATGCGTGCACACCGCTG
AGCAATGCGCACAAGCTGGCCGGCAACGTGGCGCTCGTCACGCGCGGCGG
CTGCAACTTTACGGAAAAGGTGCTGCAGGCGCAGCGCTGCGGCGCCAAGG
CGGTCATCGTCGGGGACACGTCCAACGACGCTGACTGGTGAGCACCCACA
CGCAATGATGCAACTTCAACTTGAGCATGAAAATCAAGGCTAACGTTAAC
CACATGGCGTCTACCTCACACCCCGAGCACGAGCATTGTCGTGTTTGCCG
TGTGGCATGAGAAAGTCCCTGCGCCAAGGCGGTCATCGTCGGGGACACGT
CCAACGAGGCTGACTGGTAAGCAGTGCTACACACGCTAACACACAAGAGC
ACAACCTTAATTTGAGCACAAACTTCAAGTTGTACTTGTGTGCCGACCTC
ACCCCGAGCGCGGGCATGTTCATGTTTGAATTGTGATGATGGAAGGTCTC
GGTGCCAAGGCGTTGATGGGCGGTGATACGTCCACCAACGCTGAGAGATG
AGCACCCCGCACACCACAATCATGCAACTTCACTTCAATCTTCGAGTTCA
AGGGCGCTTCACACATGCACCAGTCAAGGCTAGGACAACAACCAGTCACT
TTTCCATCACCAAGTCAATCTCATCGGCGCGTCCCATACCGCAAACTTCG
CCTGTGACCCCCCCCGCTGCGCCCCCCGTCTCCCTCCCCTCAGGGCTGTC
ATCATGTCTGGCTCCGCCGCCGAAACCGCCCCCATCACCATCCCCGCCGT
CTTCGTCAGCGCGCCCACCGCCGCGCTGCTGCGCGACCTGCTGCGCGAGG
AGGCGCATCTCGCGCGCCGCGCTGCGCTGCGCCGCGCCCCCGCCGCCGCC
GCCGCCGCCGCGCACACCGTCCTGGACCACGTCGCGGGCGCGGCGGTGCT
CGTCGCCGGCGCCCCCGTCTTCGCCATCACGTGGGCGCTGCCGCCGCCGC
CGCTGCCGTTCCTGATGCGCAGCGGCTGGGGGGGGTGCGCGCGCCGCCGT
GACGCCGCCCCCGCCGCCAGGACGAAAATCGAGGCCGCGCTCGATGCCGT
CGCCGGCCGCATCCCGTGCGCGCTCTCGTCCACTTTCGGCGCCTGCTTCG
AGCTCGCCGTCGGAGCGCGCGGCGTCGTCGACGCGGCGTCGGACGCGCTG
CGCGACCCCGCGGAATCGCTCAACGCCGCAGGCGCGCACGTGCGCCACGC
CATCGTCGACGGCCTGACCACGCTGCTGCCCGCCACGCCCGATCCCGCGG
ACGCTGCCGCCGCGAAACGCGCCGCCGCCGCCGCCGCGCCGCGCCCCACC
GCCGGCGCGCTGCTGCGTGACGCTGCGGCGTCCATCCGCGCCGCCGCAGC
GCACGCGCGGCGCGCCGTCGCCTGCCCCCTGGCCACGGTGCTGCCCGCCG
AGACCGACCCCGAGGTCGCCGCCGCCGCGCCGCGCCCCACCGCCGGCGCG
CTGCTGCGTGACGCTGCGGCGTCCATCCGCGCCGCCGCAGCGCACGCGCG
GCGCGCCGTCGCCCGCCCCCTGGCCGCGGTGCTGCCCGCCAAGACCGACC
CCGAGGTCGCCGCCGCCGCCGCCGCGCGCCGCGCCGCCGGCGCCGCCGGC
GCGCCGCCCCCCGCCGCCGCCGCCGCCGCGCGCTTCGCCGCCGCCGCGGC
GCGCGCCGCGCTGCCGCACGTGTCCGTCTCCATCGACGCGCGCGGCGCCG
TGCTGCCGGCGGCGGCGCGCGACAGCGGCGGCGCCTTTGTGTTCCGCGGC
GGCGGCGCGCTGTCGCCGCTGGGCGCCGCCGTGCTGTACGCCATCGCGTC
GCTGGCGCTGCTGGCGGCGACGAGCGCGGGGGCGGCGGCGGTGGCGCGCG
CCGCGGGGGCGCGCGCGCGCGGCGGCAGCGCGACTGCGCGGTGGGGCGGC
TGGCGACGCGGCGCTTTTCGAGCGCTGCTGCTGCTGCCGCCGCCGCTGCG
GGTGGTGGTGAAGGTGTGGCGGGGGAGGGAGAGGGGGAGGGGGAAGGGCA
GGGGGGGGGGCTTGTGGGGGATCTGGGCTGCTGCTCCATATGCCTGGATG
ATTACAGGGATGGGGATGATGTGACGGCACTGCCGTGCAGGTGAGGAGCG
CAGTGGGCGTAGGTTGGTATACGTGGTGATGGGTTTGTTATGTACCTCTA
GCAGATCGTGCCTTGTGCAGGTGAGCATGTGCAGGAGTGGCACCGTGCAG
GAGTGGAACCCGTGGGCACGTTTGTCACTTAGCCATGGGCATGTAGCCCT
TGGGTAAATGGGTGTTTGGGCAGCGCAGCGTGTGTCGCGTTCTTGCTGGT
GACGCACCTTGCTAAGCGCGGCACTGCCTTGCTGGCGAGTCTGCTCTCGC
AATTTTCGTACCACCACAATTATATGTCTGGGCAAGCGCTGCGGCCAGGC
CAGTACTCAAGTAGTGAAACGCTTTGTGGCAAAGCGTCACACAGTGAGTA
TTAATCTGATCTTTTAGTAGTGGCCGTCCCGTCTTGCGATTCCTGGGAGG
TCAATCCACGGGGTGTGAAGGCGATTGCCATCTGACAATTGCAATTGCCA
TCTGCTGACACGCTTCTGCGCTGACTCATTTTGTTTGTCATTGACCTCCG
CGCTTTTGCAGGCACCAGTTCCACAAGGACTGCGTTCAGCCGTGGCTGGT
GCGCGGCGGCCTGTGCCCACTGTAAGGACTTGAAGTAGACTTCTCAATGC
TAACTTCAAGAGTGCATGTACCGCATGCGACGCACCGCACGTGCTTGGCT
CCACCCTTGCTTTATGCAAATGCGCACCTATGGTCTGCTGACGTTTCAAT
TCAAACTTGTGAGGGCGCATGCTTACTAGCGACAACCGTGCGTCGCATGC
AATGTGGCAGACTCAGCGTACTTCTTTTTATTGCAGCAGTTGCATTGTTG
AGGTGTTCAGGTTGAATTCAAGTTGTGGCGGATGACACTTGCAACGGCGC
AACGGTCGTCATATCCTTTGCCGCATTCCATGATGACCATTACACGCAGA
GAGTTCACTCTTCGCCCTGCACGCGTGACAGCAACCGCTCATCCCTCCCT
ATACCCTGACAGCAACTGCTCATCCATACTTACCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCTCACTCCTCCGCCCCCAGGTGCAAGTCGGACGCGCTGG
GAGAGCGCCCCCCCCGCGGCGCGCATTCGCGCAGGCCCTCATGGGCCCCT
GCCGCAGCAGCAGCAGCGCTCGGCGGCGCGGTGCCCTCGCCCTTTGAGCT
GGGCGACGCATTTGCCGCGCACGGCTTCTCCGCGCTCCTGTGCTCAGTGC
TCATCGTGCTGCTGCTCACGTGCGCGACGCAAGGGTAGAGGGGGGTTGAA
TCGCTTGCCCCCCCCCCCCCCCCCCCTCCATGTTGACCCACTTGTCGACG
AAGCTCTGTGTTGCAACCTGGCTCGCACCGGCTTGCGAAGCAGGGTTGGA
GGGGGTCGATTGCGTGCCCCCCCCCCCCCGCACACACACAAAATGTGCCC
AGCAGTCGACGACACTCCCCGTGCTTCCCCC

Coding sequence (CDS) from alignment at Contig_23:1176527..1181607+

>mRNA_4991 ID=mRNA_4991|Name=jgi.p|Trimin1|348409|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1968bp|location=Sequence derived from alignment at Contig_23:1176527..1181607+ (Tribonema minus UTEX_B_3156 )
ATGGGGAGGCTGGCGATGGTGCTTGCTCTGGCGGCGTGTGCCGACCCTGC
TTATGAGCTGCATTGGCACGTGCCTGCTGCCTTCGGCTCGGACGTCAGGG
TAGACAAGGAGAGGCTGATCCTGGCGAGCCCGGCGGATGCGTGCACACCG
CTGAGCAATGCGCACAAGCTGGCCGGCAACGTGGCGCTCGTCACGCGCGG
CGGCTGCAACTTTACGGAAAAGGTGCTGCAGGCGCAGCGCTGCGGCGCCA
AGGCGGTCATCGTCGGGGACACGTCCAACGACGCTGACTGTCCCTGCGCC
AAGGCGGTCATCGTCGGGGACACGTCCAACGAGGCTGACTGGGCTGTCAT
CATGTCTGGCTCCGCCGCCGAAACCGCCCCCATCACCATCCCCGCCGTCT
TCGTCAGCGCGCCCACCGCCGCGCTGCTGCGCGACCTGCTGCGCGAGGAG
GCGCATCTCGCGCGCCGCGCTGCGCTGCGCCGCGCCCCCGCCGCCGCCGC
CGCCGCCGCGCACACCGTCCTGGACCACGTCGCGGGCGCGGCGGTGCTCG
TCGCCGGCGCCCCCGTCTTCGCCATCACGTGGGCGCTGCCGCCGCCGCCG
CTGCCGTTCCTGATGCGCAGCGGCTGGGGGGGGTGCGCGCGCCGCCGTGA
CGCCGCCCCCGCCGCCAGGACGAAAATCGAGGCCGCGCTCGATGCCGTCG
CCGGCCGCATCCCGTGCGCGCTCTCGTCCACTTTCGGCGCCTGCTTCGAG
CTCGCCGTCGGAGCGCGCGGCGTCGTCGACGCGGCGTCGGACGCGCTGCG
CGACCCCGCGGAATCGCTCAACGCCGCAGGCGCGCACGTGCGCCACGCCA
TCGTCGACGGCCTGACCACGCTGCTGCCCGCCACGCCCGATCCCGCGGAC
GCTGCCGCCGCGAAACGCGCCGCCGCCGCCGCCGCGCCGCGCCCCACCGC
CGGCGCGCTGCTGCGTGACGCTGCGGCGTCCATCCGCGCCGCCGCAGCGC
ACGCGCGGCGCGCCGTCGCCTGCCCCCTGGCCACGGTGCTGCCCGCCGAG
ACCGACCCCGAGGTCGCCGCCGCCGCGCCGCGCCCCACCGCCGGCGCGCT
GCTGCGTGACGCTGCGGCGTCCATCCGCGCCGCCGCAGCGCACGCGCGGC
GCGCCGTCGCCCGCCCCCTGGCCGCGGTGCTGCCCGCCAAGACCGACCCC
GAGGTCGCCGCCGCCGCCGCCGCGCGCCGCGCCGCCGGCGCCGCCGGCGC
GCCGCCCCCCGCCGCCGCCGCCGCCGCGCGCTTCGCCGCCGCCGCGGCGC
GCGCCGCGCTGCCGCACGTGTCCGTCTCCATCGACGCGCGCGGCGCCGTG
CTGCCGGCGGCGGCGCGCGACAGCGGCGGCGCCTTTGTGTTCCGCGGCGG
CGGCGCGCTGTCGCCGCTGGGCGCCGCCGTGCTGTACGCCATCGCGTCGC
TGGCGCTGCTGGCGGCGACGAGCGCGGGGGCGGCGGCGCGCGACTGCGCG
GTGGGGCGGCTGGCGACGCGGCGCTTTTCGAGCGCTGCTGCTGCTGCCGC
CGCCGCTGCGGGTGGTGGTGAAGGTGTGGCGGGGGAGGGAGAGGGGGAGG
GGGAAGGGCAGGGGGGGGGGCTTGTGGGGGATCTGGGCTGCTGCTCCATA
TGCCTGGATGATTACAGGGATGGGGATGATGTGACGGCACTGCCGTGCAG
GCACCAGTTCCACAAGGACTGCGTTCAGCCGTGGCTGGTGCGCGGCGGCC
TGTGCCCACTGTGCAAGTCGGACGCGCTGGGAGAGCGCCCCCCCCGCGGC
GCGCATTCGCGCAGGCCCTCATGGGCCCCTGCCGCAGCAGCAGCAGCGCT
CGGCGGCGCGGTGCCCTCGCCCTTTGAGCTGGGCGACGCATTTGCCGCGC
ACGGCTTCTCCGCGCTCCTGTGCTCAGTGCTCATCGTGCTGCTGCTCACG
TGCGCGACGCAAGGGTAG