Trimin1|348264|estExt_Genemark1.C_Ctg_220007 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348264
Unique NameTrimin1|348264|estExt_Genemark1.C_Ctg_220007
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length432
Homology
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Match: A0A835Z578_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z578_9STRA)

HSP 1 Score: 674 bits (1739), Expect = 1.000e-241
Identity = 431/431 (100.00%), Postives = 431/431 (100.00%), Query Frame = 0
Query:    1 MTAMSTCTRMCVLAVCALATCNAFGMGPARQLLAQPLRSSMTHYWSSTAQPAAASTPACNSLSMAVPTQGEVQAVVDAAIKAIAADKPAKALFGGGIDVKGVQAAGKPKEGCVNIRFLIRGKEVAKGVGDAKRPGGQGQVTAQTEGGKLVRCSAASVAANWRSCCADGTCVGGACGSGALPPSARVLFIGNSYVRELAQAAVCQNLDLLMSITVMPYARFYGHSMLGGARLPRPQAWAYSREEGLRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRKLFAPDDDVAVYDFANGARVFVAXXXXXXXXXXXXXXXXXXXXXXXXXAVNTPLAFTPQAGAGDAERALGLTPLAYYLRFRGRNLEXXXXXXXXXXXXXXXXXXELTAVVVNPGNPLGWARGTFCAQENRAKWLRAPRAFVAVCDYLSERE 431
            MTAMSTCTRMCVLAVCALATCNAFGMGPARQLLAQPLRSSMTHYWSSTAQPAAASTPACNSLSMAVPTQGEVQAVVDAAIKAIAADKPAKALFGGGIDVKGVQAAGKPKEGCVNIRFLIRGKEVAKGVGDAKRPGGQGQVTAQTEGGKLVRCSAASVAANWRSCCADGTCVGGACGSGALPPSARVLFIGNSYVRELAQAAVCQNLDLLMSITVMPYARFYGHSMLGGARLPRPQAWAYSREEGLRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRKLFAPDDDVAVYDFANGARVFVAXXXXXXXXXXXXXXXXXXXXXXXXXAVNTPLAFTPQAGAGDAERALGLTPLAYYLRFRGRNLEXXXXXXXXXXXXXXXXXXELTAVVVNPGNPLGWARGTFCAQENRAKWLRAPRAFVAVCDYLSERE
Sbjct:    1 MTAMSTCTRMCVLAVCALATCNAFGMGPARQLLAQPLRSSMTHYWSSTAQPAAASTPACNSLSMAVPTQGEVQAVVDAAIKAIAADKPAKALFGGGIDVKGVQAAGKPKEGCVNIRFLIRGKEVAKGVGDAKRPGGQGQVTAQTEGGKLVRCSAASVAANWRSCCADGTCVGGACGSGALPPSARVLFIGNSYVRELAQAAVCQNLDLLMSITVMPYARFYGHSMLGGARLPRPQAWAYSREEGLRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRKLFAPDDDVAVYDFANGARVFVAXXXXXXXXXXXXXXXXXXXXXXXXXAVNTPLAFTPQAGAGDAERALGLTPLAYYLRFRGRNLEXXXXXXXXXXXXXXXXXXELTAVVVNPGNPLGWARGTFCAQENRAKWLRAPRAFVAVCDYLSERE 431          
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Match: A0A836CME0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CME0_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.330e-21
Identity = 103/284 (36.27%), Postives = 123/284 (43.31%), Query Frame = 0
Query:  152 CSAASVAANWRSCCADGTCVGGACGSG-------ALPPSARVLFIGNSYVRELAQAAVCQNLDLLMSITVMPYARFYGHSMLGGARLPRPQAWAYSREEGLRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRKLFAPDDDVAVYDFANGARVFVAXXXXXXXXXXXXXXXXXXXXXXXXXAVNTPLAFTPQAGAGDAERALGLTPLAYYLRFRGRNLEXXXXXXXXXXXXXXXXXXELTAVVVNPGNPLGWARGTFCAQENRAKWLRAPRAFVAVCDYLS 428
            CSA +VAANWRSCCAD +C G  C SG       AL    RVLF GNS++RELA+A VC NL LL  +T MP       +++       P  W Y    GL D    XXXXXXXXXXXXXXX                 AP DD A Y F+NGA + +A                          +N P     +  A  A     L+ +A YL F+                       +LTAVV N GN  GWA   FC  +  A     P AF   CD L+
Sbjct:   61 CSAEAVAANWRSCCADASC-GAPCSSGXXXXXXXALRARTRVLFFGNSHIRELAEALVCDNLALLTGVTFMPNVTADARTLMMRGHTVPPLHWPYLLAAGLTDPDAGXXXXXXXXXXXXXXXE----------------APQDDYATYHFSNGALIHMA--------------------------INVPPTLIAEGEAAPASSPFQLSAVADYLNFK---------------------FEDLTAVVANVGNFRGWAIKAFCGGDAAALPPPLP-AFERTCDDLA 279          
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Match: A0A836CE68_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE68_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.820e-16
Identity = 87/304 (28.62%), Postives = 117/304 (38.49%), Query Frame = 0
Query:  115 IRFLIRGKEVAKGVGDAKRP----------GGQGQVTAQTEGGKLVRCSAASVAANWRSCCADGTCVGGA-CGSGALPPSARVLFIGNSYVRELAQAAVCQNLDLLMSITVMPYARFYGHS-MLGGARLPRPQAWAYSREEGLRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRKLFAPDDDVAVYDFANGARVFVAXXXXXXXXXXXXXXXXXXXXXXXXXAVNTPLAFTPQAGAGDAERALGLTPLAYYLRFRGRNLEXXXXXXXXXXXXXXXXXXELTAVVVNPGNPLGWARGTFCA 406
            +R +  G++     G  KR           G     +AQ  GG      AA++ A  RSCC+D TC   A CG G L P   +L +GNS++RE  QA VC NLD L SI+         ++ ++ G  LP    W Y+   G                                 G  +  AP DDVAVY FA+GAR++                            +NTPL  TP A A  AE  +GL   A +L F                        +L+A++VN GN   WA   +CA
Sbjct:  221 VRGVFGGQQQRHVAGGGKRASVPQLAPLPRGAVADCSAQPAGGSC----AAALGAGERSCCSDDTCRHSAECGDGKLRPGTALLAVGNSHMRETLQAIVCANLDSLESISFQANVTAEANAAIMAGGALPPLTTWTYNHATGA---------------------------VLDADGDARDKAPPDDVAVYAFASGARLYTL--------------------------INTPLQLTPAAAAPPAETPVGLAAAARHLGFA---------------------LGDLSALLVNRGNYRRWAHRLWCA 446          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z578_9STRA1.000e-241100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CME0_9STRA6.330e-2136.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CE68_9STRA3.820e-1628.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:38619..45985 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348264mRNA_6317Tribonema minus UTEX_B_3156 mRNAContig_22 38595..45985 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348264|estExt_Genemark1.C_Ctg_220007 ID=Trimin1|348264|estExt_Genemark1.C_Ctg_220007|Name=jgi.p|Trimin1|348264|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=432bp
MTAMSTCTRMCVLAVCALATCNAFGMGPARQLLAQPLRSSMTHYWSSTAQ
PAAASTPACNSLSMAVPTQGEVQAVVDAAIKAIAADKPAKALFGGGIDVK
GVQAAGKPKEGCVNIRFLIRGKEVAKGVGDAKRPGGQGQVTAQTEGGKLV
RCSAASVAANWRSCCADGTCVGGACGSGALPPSARVLFIGNSYVRELAQA
AVCQNLDLLMSITVMPYARFYGHSMLGGARLPRPQAWAYSREEGLRDPQA
WAYSREEGLSDPQAWAYSREEGLRDPQGVRKLFAPDDDVAVYDFANGARV
FVAGVRKRFAPDDDVAVYDFANGARVFVAVNTPLAFTPQAGAGDAERALG
LTPLAYYLRFRGRNLEERALGLTPLAFHLRVRWRELTAVVVNPGNPLGWA
RGTFCAQENRAKWLRAPRAFVAVCDYLSERE*
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