mRNA_6317 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348264
Unique NamemRNA_6317
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Match: A0A835Z578_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z578_9STRA)

HSP 1 Score: 676 bits (1744), Expect = 2.380e-242
Identity = 431/431 (100.00%), Postives = 431/431 (100.00%), Query Frame = 1
Query:   25 MTAMSTCTRMCVLAVCALATCNAFGMGPARQLLAQPLRSSMTHYWSSTAQPAAASTPACNSLSMAVPTQGEVQAVVDAAIKAIAADKPAKALFGGGIDVKGVQAAGKPKEGCVNIRFLIRGKEVAKGVGDAKRPGGQGQVTAQTEGGKLVRCSAASVAANWRSCCADGTCVGGACGSGALPPSARVLFIGNSYVRELAQAAVCQNLDLLMSITVMPYARFYGHSMLGGARLPRPQAWAYSREEGLRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRKLFAPDDDVAVYDFANGARVFVAXXXXXXXXXXXXXXXXXXXXXXXXXAVNTPLAFTPQAGAGDAERALGLTPLAYYLRFRGRNLEXXXXXXXXXXXXXXXXXXELTAVVVNPGNPLGWARGTFCAQENRAKWLRAPRAFVAVCDYLSERE 1317
            MTAMSTCTRMCVLAVCALATCNAFGMGPARQLLAQPLRSSMTHYWSSTAQPAAASTPACNSLSMAVPTQGEVQAVVDAAIKAIAADKPAKALFGGGIDVKGVQAAGKPKEGCVNIRFLIRGKEVAKGVGDAKRPGGQGQVTAQTEGGKLVRCSAASVAANWRSCCADGTCVGGACGSGALPPSARVLFIGNSYVRELAQAAVCQNLDLLMSITVMPYARFYGHSMLGGARLPRPQAWAYSREEGLRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRKLFAPDDDVAVYDFANGARVFVAXXXXXXXXXXXXXXXXXXXXXXXXXAVNTPLAFTPQAGAGDAERALGLTPLAYYLRFRGRNLEXXXXXXXXXXXXXXXXXXELTAVVVNPGNPLGWARGTFCAQENRAKWLRAPRAFVAVCDYLSERE
Sbjct:    1 MTAMSTCTRMCVLAVCALATCNAFGMGPARQLLAQPLRSSMTHYWSSTAQPAAASTPACNSLSMAVPTQGEVQAVVDAAIKAIAADKPAKALFGGGIDVKGVQAAGKPKEGCVNIRFLIRGKEVAKGVGDAKRPGGQGQVTAQTEGGKLVRCSAASVAANWRSCCADGTCVGGACGSGALPPSARVLFIGNSYVRELAQAAVCQNLDLLMSITVMPYARFYGHSMLGGARLPRPQAWAYSREEGLRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRKLFAPDDDVAVYDFANGARVFVAXXXXXXXXXXXXXXXXXXXXXXXXXAVNTPLAFTPQAGAGDAERALGLTPLAYYLRFRGRNLEXXXXXXXXXXXXXXXXXXELTAVVVNPGNPLGWARGTFCAQENRAKWLRAPRAFVAVCDYLSERE 431          
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Match: A0A836CME0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CME0_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.910e-21
Identity = 103/284 (36.27%), Postives = 123/284 (43.31%), Query Frame = 1
Query:  478 CSAASVAANWRSCCADGTCVGGACGSG-------ALPPSARVLFIGNSYVRELAQAAVCQNLDLLMSITVMPYARFYGHSMLGGARLPRPQAWAYSREEGLRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRKLFAPDDDVAVYDFANGARVFVAXXXXXXXXXXXXXXXXXXXXXXXXXAVNTPLAFTPQAGAGDAERALGLTPLAYYLRFRGRNLEXXXXXXXXXXXXXXXXXXELTAVVVNPGNPLGWARGTFCAQENRAKWLRAPRAFVAVCDYLS 1308
            CSA +VAANWRSCCAD +C G  C SG       AL    RVLF GNS++RELA+A VC NL LL  +T MP       +++       P  W Y    GL D    XXXXXXXXXXXXXXX                 AP DD A Y F+NGA + +A                          +N P     +  A  A     L+ +A YL F+                       +LTAVV N GN  GWA   FC  +  A     P AF   CD L+
Sbjct:   61 CSAEAVAANWRSCCADASC-GAPCSSGXXXXXXXALRARTRVLFFGNSHIRELAEALVCDNLALLTGVTFMPNVTADARTLMMRGHTVPPLHWPYLLAAGLTDPDAGXXXXXXXXXXXXXXXE----------------APQDDYATYHFSNGALIHMA--------------------------INVPPTLIAEGEAAPASSPFQLSAVADYLNFK---------------------FEDLTAVVANVGNFRGWAIKAFCGGDAAALPPPLP-AFERTCDDLA 279          
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Match: A0A836CE68_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE68_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.130e-16
Identity = 87/304 (28.62%), Postives = 117/304 (38.49%), Query Frame = 1
Query:  367 IRFLIRGKEVAKGVGDAKRP----------GGQGQVTAQTEGGKLVRCSAASVAANWRSCCADGTCVGGA-CGSGALPPSARVLFIGNSYVRELAQAAVCQNLDLLMSITVMPYARFYGHS-MLGGARLPRPQAWAYSREEGLRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRKLFAPDDDVAVYDFANGARVFVAXXXXXXXXXXXXXXXXXXXXXXXXXAVNTPLAFTPQAGAGDAERALGLTPLAYYLRFRGRNLEXXXXXXXXXXXXXXXXXXELTAVVVNPGNPLGWARGTFCA 1242
            +R +  G++     G  KR           G     +AQ  GG      AA++ A  RSCC+D TC   A CG G L P   +L +GNS++RE  QA VC NLD L SI+         ++ ++ G  LP    W Y+   G                                 G  +  AP DDVAVY FA+GAR++                            +NTPL  TP A A  AE  +GL   A +L F                        +L+A++VN GN   WA   +CA
Sbjct:  221 VRGVFGGQQQRHVAGGGKRASVPQLAPLPRGAVADCSAQPAGGSC----AAALGAGERSCCSDDTCRHSAECGDGKLRPGTALLAVGNSHMRETLQAIVCANLDSLESISFQANVTAEANAAIMAGGALPPLTTWTYNHATGA---------------------------VLDADGDARDKAPPDDVAVYAFASGARLYTL--------------------------INTPLQLTPAAAAPPAETPVGLAAAARHLGFA---------------------LGDLSALLVNRGNYRRWAHRLWCA 446          
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Match: A0A836CJW0_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJW0_9STRA)

HSP 1 Score: 1027 bits (2655), Expect = 0.000e+0
Identity = 610/610 (100.00%), Postives = 610/610 (100.00%), Query Frame = 1
Query:    1 MLAAYASQAEQHPLAAAAAATSAPALRRTRALRKPPHAAPTLAAAPHARGSRTVRDVRMRANVVPHPTPPLQLQNAAYMLHSAARAGAGDGCLPPALRHLYADGAAAAAAAGPAPLSGGTPKPHAVELLSHVRAAEEDWQRSIRSEVLALAQEAGQPLAQPRRRGSXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXAAAPAKGFLFDSMDLLDAVAAVRTPNRSAFLRGADSGGGXXXXXXXAADAWGGLVALSLRTPRAAELRARFVELAPAHRQSCLDDXXXXXXXXXXXXXXXXXXXDAQRFGDERRAAGEAALAGGLLRDVRRFARRGVPPALRPGLWRLMLGLPAAAADQAAAAAEAEHLEQLLEEVRRVELVTDGLYELDVLHIGDDDKYFVFEEVLRDVVMAFTRDATVPARAAVATHAPIPHRIAGAGAPRGTVPPCGVQPFRGLVSYAAPLCFLWAERAPVYAAFRAMYVRYWCRLNAIRSAPGGLLHLLRLFEDLLRCHHPQLMLKLAELGIQQPLRLAMPWIQFGFVGYLEVGEVLQLWDRVLAYDSLSLLPALAAAVFVFRSAAVLAAPDADAVRDAFADGTCLKAIPLLQAFLFPQ 1830
            MLAAYASQAEQHPLAAAAAATSAPALRRTRALRKPPHAAPTLAAAPHARGSRTVRDVRMRANVVPHPTPPLQLQNAAYMLHSAARAGAGDGCLPPALRHLYADGAAAAAAAGPAPLSGGTPKPHAVELLSHVRAAEEDWQRSIRSEVLALAQEAGQPLAQPRRRGSXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXAAAPAKGFLFDSMDLLDAVAAVRTPNRSAFLRGADSGGGXXXXXXXAADAWGGLVALSLRTPRAAELRARFVELAPAHRQSCLDDXXXXXXXXXXXXXXXXXXXDAQRFGDERRAAGEAALAGGLLRDVRRFARRGVPPALRPGLWRLMLGLPAAAADQAAAAAEAEHLEQLLEEVRRVELVTDGLYELDVLHIGDDDKYFVFEEVLRDVVMAFTRDATVPARAAVATHAPIPHRIAGAGAPRGTVPPCGVQPFRGLVSYAAPLCFLWAERAPVYAAFRAMYVRYWCRLNAIRSAPGGLLHLLRLFEDLLRCHHPQLMLKLAELGIQQPLRLAMPWIQFGFVGYLEVGEVLQLWDRVLAYDSLSLLPALAAAVFVFRSAAVLAAPDADAVRDAFADGTCLKAIPLLQAFLFPQ
Sbjct:    1 MLAAYASQAEQHPLAAAAAATSAPALRRTRALRKPPHAAPTLAAAPHARGSRTVRDVRMRANVVPHPTPPLQLQNAAYMLHSAARAGAGDGCLPPALRHLYADGAAAAAAAGPAPLSGGTPKPHAVELLSHVRAAEEDWQRSIRSEVLALAQEAGQPLAQPRRRGSXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXAAAPAKGFLFDSMDLLDAVAAVRTPNRSAFLRGADSGGGXXXXXXXAADAWGGLVALSLRTPRAAELRARFVELAPAHRQSCLDDXXXXXXXXXXXXXXXXXXXDAQRFGDERRAAGEAALAGGLLRDVRRFARRGVPPALRPGLWRLMLGLPAAAADQAAAAAEAEHLEQLLEEVRRVELVTDGLYELDVLHIGDDDKYFVFEEVLRDVVMAFTRDATVPARAAVATHAPIPHRIAGAGAPRGTVPPCGVQPFRGLVSYAAPLCFLWAERAPVYAAFRAMYVRYWCRLNAIRSAPGGLLHLLRLFEDLLRCHHPQLMLKLAELGIQQPLRLAMPWIQFGFVGYLEVGEVLQLWDRVLAYDSLSLLPALAAAVFVFRSAAVLAAPDADAVRDAFADGTCLKAIPLLQAFLFPQ 610          
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Match: A0A6H5JP51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP51_9PHAE)

HSP 1 Score: 327 bits (838), Expect = 1.810e-101
Identity = 250/524 (47.71%), Postives = 301/524 (57.44%), Query Frame = 1
Query:  379 ELLSHVRAAEEDWQRSIRSEVLALAQEAGQPLAQPRRRGSXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXAA---------------APAKGFLFDSMDLLDAVAAVRTPNRSAFLRGADSGGGXXXXXXXAADAWGGLVALSLRTPRAAELRARFVELAPAHRQSCLDDXXXXXXXXXXXXXXXXXXXDAQRFGDERRAAGEAALAGGLLRDVRRFARRGVPPALRPGLWRLMLGLPAAAADQAAAAAEAEHLEQLLEEVRRVELVTDGLYELDVLHIGDDDKYFVFEEVLRDVVMAFTRDATVPARAAVATHAPIPHR-----------IAGAGAPRGTVPPCGVQPFRGLVSYAAPLCFLWAERAPVYAAFRAMYVRYWCRLNAIRSAPGGLLHLLRLFEDLLRCHHPQLMLKLAELGIQQPLRLAMPWIQFGFVGYLEVGE---------------VLQLWDRVLAYDSLSLLPALAAAVFVFRSAAVLAAPDADAVRDAFADGTCLKAIPLLQAFLFP 1827
            E L +VR A   W+ ++  E+ ALA E G   A+PR  GS     XXXXXXXXXXXX XXXXXXXXXXXXX                 A   GFLFDS DLLDAV+A+R+PNRS FL                 + WG +V L LR     ELR  + EL+P  RQ+ LDD                      RF  ER + G   L  G   +   +ARRGV  +LRP +WR +LGLP A+  QA    + E+   L+ EV R ELVTD LY LDV  I DDDKYF FEE L DV++AF+RD  V   +    H  +P             ++GAGA  G  PPCGVQPFRGLV+YAA LCFL+ ER  VY   R M+ R+WCRLNA+RS PG LL LL+LFE     HHP+L+ KL +LG+Q PL+LAMPWIQFGFV YLE  +               VL LWDR+L YDSL LL  LAA+V VFR+  VL   DA AV + F+DG  L+ +PLLQAF+FP
Sbjct:   36 EPLDYVRKACSRWRANVADELRALAAERGGRFARPRAGGSPAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGTGGFLFDSADLLDAVSAIRSPNRSDFL--------------PVEEEWG-MVHLQLRVKSLEELRESYRELSPELRQTGLDDRGGFGE---------------DRFTAERLSQGRKILKAGFAPEAMEYARRGVADSLRPAVWRAILGLPKAS-KQALTPQDLEYFAGLMSEVDRTELVTDELYGLDVQFISDDDKYFPFEETLHDVILAFSRDPWVLRHSEATLHDLVPIGEGAVGADDWAFLSGAGA-GGYCPPCGVQPFRGLVNYAAVLCFLFEEREAVYFTLRTMFARFWCRLNAVRSGPGMLLRLLKLFER----HHPRLVRKLLQLGVQ-PLQLAMPWIQFGFVTYLEADQASLCTTACSSSPCDLVLLLWDRLLGYDSLDLLSVLAASVLVFRAKLVLQVSDAAAVMEIFSDGRQLEVVPLLQAFMFP 522          
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Match: A0A8J2WGK4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WGK4_9STRA)

HSP 1 Score: 317 bits (812), Expect = 1.350e-97
Identity = 198/483 (40.99%), Postives = 271/483 (56.11%), Query Frame = 1
Query:  385 LSHVRAAEEDWQRSIRSEVLALAQEAGQPLAQPRRRGSXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXAAAPAKGFLFDSMDLLDAVAAVRTPNRSAFLRGADSGGGXXXXXXXAADAWGGLVALSLRTPRAAELRARFVELAPAHRQSCLDDXXXXXXXXXXXXXXXXXXXDAQRFGDERRAAGEAALAGGLLRDVRRFARRGVPPALRPGLWRLMLGLPAAAADQAAAAAEAEHLEQLLEEVRRVELVTDGLYELDVLHIGDDDKYFVFEEVLRDVVMAFTRDATVPARAAVATHAPIP-HRIAGAGAPRGTVPPCGVQPFRGLVSYAAPLCFLWAERAPVYAAFRAMYVRYWCRLNAIRSAPGGLLHLLRLFEDLLRCHHPQLMLKLAELGIQQPLRLAMPWIQFGFVGYLEVGEVLQLWDRVLAYDSLSLLPALAAAVFVFRSAAVLAAPDADAVRDAFADGTCLKAIPLLQAFLFPQ 1830
            L+ V+ A + W+ SI  E+ A+A E   PL + R++            XX     +                P   FLFDS DLLDA++ + +P+ +                    + WG LV L LRT    ELR ++ EL P+ RQ  +DD                   D  +F D     GE  LA G +   R +ARRGVPP+LRP ++R +LGLP     QA +A E  + E L + V  +ELVTD LY++DV H+ DDD YF+F+E+L + V+AF+RD+ VP    V THAP+P       G P   VPPCGVQPFRG VSYAAPL F++     +Y AFRA Y +++CRLN +R+    LL L  LFE L+  HHP+L   L ++G+  PL +A+PWIQFGFVG L+V +VL LWDR+L ++ L+LL  LAAA+FV+RS  +L     +  R+ FADG  L+ +PLLQ FL+P+
Sbjct:   87 LASVQKARKQWEASINDELRAIASERRVPLVRKRKK--------IVIKXXEEETDELIEMKVEEILSPTLVTPGTRFLFDSDDLLDAISHIESPSNN--------------------EGWG-LVKLQLRTATLTELRDKYKELHPSKRQYGVDDVTGDPR-------------DKAKFADAWHELGEKCLAEGHIPLARTYARRGVPPSLRPAVYRSLLGLPHMEDAQATSAFEERYYEDLRDRVDSIELVTDELYQMDVQHVADDDTYFIFDEMLGNCVLAFSRDSWVPKNCVVKTHAPLPCENDLMKGQP---VPPCGVQPFRGFVSYAAPLTFVFGRETSLYFAFRAFYAQHFCRLNVLRTNQNTLLPLCALFERLVIEHHPRLFFYLVQVGVD-PLAIALPWIQFGFVGLLDVEQVLLLWDRLLGFEDLALLSVLAAAIFVYRSEKLLQCSSLEEAREMFADGAVLEVVPLLQTFLWPE 523          
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Match: D7FT85_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT85_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 9.760e-95
Identity = 237/509 (46.56%), Postives = 283/509 (55.60%), Query Frame = 1
Query:  379 ELLSHVRAAEEDWQRSIRSEVLALAQEAGQPLAQPRRRGSXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXAAAPAK---------------GFLFDSMDLLDAVAAVRTPNRSAFLRGADSGGGXXXXXXXAADAWGGLVALSLRTPRAAELRARFVELAPAHRQSCLDDXXXXXXXXXXXXXXXXXXXDAQRFGDERRAAGEAALAGGLLRDVRRFARRGVPPALRPGLWRLMLGLPAAAADQAAAAAEAEHLEQLLEEVRRVELVTDGLYELDVLHIGDDDKYFVFEEVLRDVVMAFTRDATVPARAAVATHAPIPHR-----------IAGAGAPRGTVPPCGVQPFRGLVSYAAPLCFLWAERAPVYAAFRAMYVRYWCRLNAIRSAPGGLLHLLRLFEDLLRCHHPQLMLKLAELGIQQPLRLAMPWIQFGFVGYLEVGEVLQLWDRVLAYDSLSLLPALAAAVFVFRSAAVLAAPDADAVRDAFADGTCLKAIPLLQAFLFP 1827
            E L HVR A   W+ ++  E+ ALA E G   A+PR  GS     XXXXXXXXXXXX XXXXXXXXXXXXX                     GFLFDS DLLDA                                      L LR     ELR  + EL+P   Q+ LDD                      RF  ER + G   L  G   +   +ARRGV  +LRP +WR +LGLP A   Q     + E+   L+ EV R ELVTD LY LDV  I DDDKYF FEE L DV++AF+RD  V   +    H  +P             ++GAGA  G  PPCGVQPFRGLV+YAA LCFL+ ER  VY   R M+ R+WCRLNA+RS PG LL LL+LFE L++ HHP+L+ KL +LG+Q PL+LAMPWIQFGFV YLE  +VL LWDR+L YDSL LL  LAA+V VFR+  VL   DA AV + F+DG  L+ +PLLQAF+FP
Sbjct:  180 EPLDHVRKACSRWRANVADELRALAAERGGRFARPRAGGSPAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGGFLFDSADLLDA--------------------------------------LQLRVKSLEELRESYRELSPELHQTGLDDRGGFGE---------------DRFTAERLSQGRKILKAGFAPEAMEYARRGVADSLRPAVWRAILGLPKALTPQ-----DLEYFAGLMSEVDRTELVTDELYGLDVQFISDDDKYFPFEETLHDVILAFSRDPWVLRHSEATLHDLVPIGEGAVGADDWAFLSGAGA-GGYCPPCGVQPFRGLVNYAAVLCFLFEEREAVYFTLRTMFARFWCRLNAVRSGPGMLLRLLKLFESLVQRHHPRLVRKLLQLGLQ-PLQLAMPWIQFGFVTYLEADQVLLLWDRLLGYDSLDLLSVLAASVLVFRAKLVLQVSDAAAVMEIFSDGRQLEVVPLLQAFMFP 628          
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Match: F0YBG1_AURAN (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBG1_AURAN)

HSP 1 Score: 285 bits (730), Expect = 1.090e-87
Identity = 166/364 (45.60%), Postives = 226/364 (62.09%), Query Frame = 1
Query:  748 GLVALSLRTPRAAELRARFVELAPAHRQSCLDDXXXXXXXXXXXXXXXXXXXDAQRFGDERRAAGEAALAGGLLRDVRRFARRGVPPALRPGLWRLMLGLPAAAADQAAAAAEAEHLEQLLEEVRRVELVTDGLYELDVLHIGDDDKYFVFEEVLRDVVMAFTRDATVPARAAVATHAPIPHR----IAGAGAPRGT-VPPCGVQPFRGLVSYAAPLCFLWAERAPVYAAFRAMYVRYWCRLNAIRSAPGGLLHLLRLFEDLLRCHHPQLMLKLAELGIQQPLRLAMPWIQFGFVGYLEVGEVLQLWDRVLAYDSLSLLPALAAAVFVFRSAAVLAAPDADAVRDAFADGTCLKAIPLLQAFLF 1824
            G+V L L T    +LR  F EL P+ RQ                         A RF DE  A G+  LA G +   RR+ARRGVPP+LRP ++R++LGLP     Q  + AE  +  +L   V ++ELVTD L+++DV H+ D+D YF FEE L +VV+AF+RD  V   +AV THA +  +      G     G+ VPPC VQPFRG VSY APL F++    P+Y   RAMY ++WC+LN +R+A   LL L +LFE L+  +HP+L   L ++G+  PL +A+PWIQFGFVG L+V +VL LWDR+L ++ LSLLP LAAA+FV+RS  +L+A   D V+D F+DG+ L+ +PL+Q FLF
Sbjct:    2 GVVKLQLHTEPVRKLRETFRELHPSKRQR---------------GRRKLGDAQADRFSDEWHALGKRCLARGHVPLARRYARRGVPPSLRPQIYRVLLGLPNVEHPQGCSEAEKAYYARLKAHVDKIELVTDELFQMDVQHVADNDYYFPFEEALGNVVLAFSRDPWVLHNSAVRTHARLAAKHKEPTDGPAWKAGSAVPPCAVQPFRGFVSYTAPLTFVYEREEPIYYCLRAMYAKFWCKLNVMRTAECTLLPLCKLFEQLVIENHPKLFFYLVQIGVD-PLAVALPWIQFGFVGLLDVDQVLLLWDRILGFEDLSLLPILAAAIFVYRSEKLLSATSLDDVKDMFSDGSILQVVPLIQTFLF 349          
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Match: A0A7S2H1X2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H1X2_9STRA)

HSP 1 Score: 261 bits (668), Expect = 1.040e-78
Identity = 148/310 (47.74%), Postives = 194/310 (62.58%), Query Frame = 1
Query:  940 GEAALAGGLLRDVRRFARRGVPPALRPGLWRLMLGLPAAAADQAAAAAEAEHLEQLLEEVRRVELVTDGLYELDVLHIGDDDKYFVFEEVLRDVVMAFTRDATVPARAAVATHAPI------------PHRIAGAGAP-RGTVPPCGVQPFRGLVSYAAPLCFLWAERAPVYAAFRAMYVRYWCRLNAIRSAPGGLLHLLRLFEDLLRCHHPQLMLKLAELGIQQPLRLAMPWIQFGFVGYLEVGEVLQLWDRVLAYDSLSLLPALAAAVFVFRSAAVLAAPDADAVRDAFADGTCLKAIPLLQAFLFPQ 1830
            G + +  G +  VR+FAR GV  ALRP +WR+MLGL +        A E++H  +L  EV+RVE  TDGL E+DV    D + YF FE++L+ VV+AF+RDA V   +   TH P+            P R  G  +     VPP GV PF+GL+SYAAPL  L+ E   V++ FRAMY RYWCRLN +R+A G LL L  LFE+LL+CH P+L   L   GIQ PL +A+PWIQF FVG L+ G+VL LWDR+L +D L+LLP LA A+F+FRS  V+   D   + + F +GT L+  PLLQ  +FP 
Sbjct:   27 GHSLIQDGYIPAVRQFARTGVCVALRPRMWRIMLGLKSDVT-----AGESDHYAKLTSEVQRVEYATDGLLEMDVSQSSDLENYFPFEDLLKSVVLAFSRDAWVRGMSMFQTHHPLIDPADLDSTSTSPERDKGGRSNCLKMVPPSGVLPFKGLMSYAAPLTLLFEEEDAVFSVFRAMYARYWCRLNVLRTAEGTLLPLCHLFEELLQCHDPRLFFHLTRSGIQ-PLAIALPWIQFAFVGLLDPGQVLVLWDRILGFDDLALLPVLACAIFIFRSPTVMGIADKAGIEEVFLEGTELRVAPLLQHLVFPS 330          
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Match: A0A7S3YGJ5_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YGJ5_HETAK)

HSP 1 Score: 259 bits (662), Expect = 1.190e-78
Identity = 139/279 (49.82%), Postives = 182/279 (65.23%), Query Frame = 1
Query:  976 VRRFARRGVPPALRPGLWRLMLGLPAAAADQAAAAAEAEHLEQLLEEVRRVELVTDGLYELDVLHIGDDDKYFVFEEVLRDVVMAFTRDATVPARAAVATHAPIPHRIAGAGAPRGTVPPCGVQPFRGLVSYAAPLCFLWAERAPVYAAFRAMYVRYWCRLNAIRSAPGGLLHLLRLFEDLLRCHHPQLMLKLAELGIQQPLRLAMPWIQFGFVGYLEVGEVLQLWDRVLAYDSLSLLPALAAAVFVFRSAAVLAAPDADAVRDAFADGTCLKAIPLLQ 1812
             R++A++GVP ALR G+WR  LGL        A A E+ H   LL E +R++L+TD L+E+DV  I DDD+YFVFE++LRD V AF+RDA V   + V  H P+        AP   VPPCGVQPFRG  +Y APLCFL+ +    Y   RA++ R+WCRLNA+R  PG LL L +LFEDL+    P    +L  LG+  PL + MPWIQFGFVG+LE  ++L LWDR++ + SL LLP LAA++ +FRS  +L    AD +RD F D T LK +PLL+
Sbjct:    1 ARQYAKQGVPTALRAGIWRCALGLR----PSGAIAGESAHFRWLLSEGQRIDLITDDLFEMDVQFIADDDRYFVFEDMLRDCVGAFSRDAQVLRGSDVLPHQPLVGHHGEGQAPGTAVPPCGVQPFRGFCNYLAPLCFLYHDAPTCYGVARALWCRFWCRLNAVRGRPGTLLPLCKLFEDLVLQGAPDAFARLVALGVS-PLSIVMPWIQFGFVGFLEPDQILLLWDRIIGFQSLHLLPVLAASIIMFRSHNILKVDSADGLRDLFQDITRLKVVPLLR 274          
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Match: A0A0G4ISX4_PLABS (Rab-GAP TBC domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4ISX4_PLABS)

HSP 1 Score: 245 bits (626), Expect = 6.120e-70
Identity = 158/396 (39.90%), Postives = 218/396 (55.05%), Query Frame = 1
Query:  748 GLVALSLRTPRAAELRARFVELAPAHRQSCLDDXXXXXXXXXXXXXXXXXXXDAQRFGDERRAAGEAAL--AGGLLRDVRRFARRGVPPALRPGLWRLMLGLPAAAADQAAAAAEAEHLEQLLEEVRRVELVTDGLYELDVLHIGDDDKYFVFEEVLRDVVMAFTRDATVPARAA-----------VATHAPIPHRIAGAGAP------------------------RGTVPPCGVQPFRGLVSYAAPLCFLWAERAPVYAAFRAMYVRYWCRLNAIRSAPGGLLHLLRLFEDLLRCHHPQLMLKLAELGIQQPLRLAMPWIQFGFVGYLEVGEVLQLWDRVLAYDSLSLLPALAAAVFVFRSAAVLAAPDADAVRDAFADGTCLKAIPLLQAFLF 1824
            GL+ LSL+TP  A LR R+ +L+P  R   LDD                     + F ++R   GE  L  A   + D+ R+A+ GVP +LRP  W+ +LG+  +  D A       + E+L+ +VRR EL+TD LY L+V    D+  YFVFE++L ++++AF+RD+ +P  +            V + A +P R  GAG P                          T+PPCGV PF   V  AAPLC+L+      Y  FR MY RY+CRL+ I S PG +LHL +LFEDL++   PQ+     E+G+  PLR+  PW+   F GYL V +VL LWDR+LAYDSL LL  LA+A+F+FRS +VL A  +D +RD F DG   + +PLLQ FLF
Sbjct:  180 GLIKLSLKTPSLATLRERYRQLSPDVRHVGLDDELAGL----------------EWFRNQRYVEGERLLNDAQTTVADLMRYAQTGVPASLRPRFWKRILGVWTSDRDVA-------YYERLITQVRRWELITDDLYRLEVQETTDNAAYFVFEDMLDEIMLAFSRDSWLPKNSTLPLCLAPLTTNVFSEAAVPGRDDGAGYPFADANGKLSPSLVENSGIEIDDQGTATIPPCGVVPFHHQVMLAAPLCYLFQRCEHTYFVFRHMYARYFCRLHTISSRPGTILHLCKLFEDLVQSRSPQVFYHAVEVGMP-PLRVVFPWLFTAFSGYLAVDQVLTLWDRILAYDSLELLAILASAIFLFRSKSVLNATSSDEIRDIFEDGIYFRVMPLLQHFLF 551          
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Match: A0A1V9YY17_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YY17_9STRA)

HSP 1 Score: 224 bits (570), Expect = 3.520e-62
Identity = 153/408 (37.50%), Postives = 214/408 (52.45%), Query Frame = 1
Query:  604 AKGFLFDSMDLLDAVAAVRTPNRSAFLRGADSGGGXXXXXXXAADAWGGLVALSLRTPRAAELRARFVELAPAHRQSCLDDXXXXXXXXXXXXXXXXXXXDAQRFGDERRAAGEAALAGGLLRDVRRFARRGVPPALRPGLWRLMLGLPAAAADQAAAAAEAEHLEQLLEEVRRVELVTDGLYELDVLHIGDDDKYFVFEEVLRDVVMAFTRDATVPARAAVATHAPIPHRIAGAGAPRGTVPPCGVQPFRGLVSYAAPLCFLWAERAPVYAAFRAMYVRYWCRLNAIRSAPGGLLHLLRLFEDLLRCHHPQLMLKLAELGIQQPLRLAMPWIQFGFVGYLEVGEVLQLWDRVLAYDSLSLLPALAAAVFVFRSAAVLAAPDADAVRDAFADGTCLKAIPLLQAFLFP 1827
            A  FL    +LL A+  ++  NR++ +   DS            D W  +  L L T  +AE++ R+VEL P H Q  LD+                           +   G+  L  G + + R++A+ G P  +RP +WR  L +   A  QAA        +QL     +    TDG+Y +DV    D   YF FE+ LR V++AF+RDAT+P +A     AP+  ++AG       VPP  V P  GLV +AAPLC+L+ + A VY  FR MY RYWC+L AI S P  +L L + FE LL    P ++  L + GI  PL +A PWIQ GF G LE+ +VL LWDRV+ YDSL +LP  AAA+F FR+  +L    A+ V+D F++   +  +P+LQ FLFP
Sbjct:  151 ANRFLTSGDELLQALQRIKAVNRASHV---DS------------DYWCTIQPL-LYTKTSAEMQQRYVELGPTHAQFGLDEDVPNILGDYVYIT-------------NKNKIGDRVLVNGTVPNARQYAKTGCPINIRPHVWRQALNVEVNAKKQAA-------FQQLQALSMQSVFATDGIYLMDVQQTTDSSDYFPFEDHLRCVMLAFSRDATIPTQAVAVMEAPLTAQLAGGATT--AVPPSTVLPLSGLVMFAAPLCYLYNDPAHVYFIFREMYCRYWCQLYAISSKPNSILALCKTFETLLVRSIPHVVHHLLQHGIT-PLTIAFPWIQSGFSGVLEIDQVLLLWDRVIGYDSLEILPIFAAALFNFRAQDLLLVIRAEDVKDLFSEALEILVLPILQQFLFP 519          
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Match: A0A067CZ08_SAPPC (Rab-GAP TBC domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CZ08_SAPPC)

HSP 1 Score: 221 bits (562), Expect = 5.100e-61
Identity = 149/405 (36.79%), Postives = 209/405 (51.60%), Query Frame = 1
Query:  613 FLFDSMDLLDAVAAVRTPNRSAFLRGADSGGGXXXXXXXAADAWGGLVALSLRTPRAAELRARFVELAPAHRQSCLDDXXXXXXXXXXXXXXXXXXXDAQRFGDERRAAGEAALAGGLLRDVRRFARRGVPPALRPGLWRLMLGLPAAAADQAAAAAEAEHLEQLLEEVRRVELVTDGLYELDVLHIGDDDKYFVFEEVLRDVVMAFTRDATVPARAAVATHAPIPHRIAGAGAPRGTVPPCGVQPFRGLVSYAAPLCFLWAERAPVYAAFRAMYVRYWCRLNAIRSAPGGLLHLLRLFEDLLRCHHPQLMLKLAELGIQQPLRLAMPWIQFGFVGYLEVGEVLQLWDRVLAYDSLSLLPALAAAVFVFRSAAVLAAPDADAVRDAFADGTCLKAIPLLQAFLFP 1827
            FL  S D L A+  ++  NR+A +                AD W  +  L L T  + E++ R+VEL P H Q  LD+                           +   G+  L    + + R++A+ G P  +RP +WR  L +   A  QA       H  QL          TDG+Y LDV    D   YF FE+ LR V++AF+RDA++  +AA    +P+   ++   +    VPP GV P  GLV +AAPLC+L+ + A VY  FR MY RYWC+L+ I S P  +L L + FE LL    P ++  L + GI  PL +A PWIQ GF G LE+ +VL LWDRV+ YD+L +LP  AAA+F FR+  +L    AD VRD F++   ++ +P+LQ FLFP
Sbjct:  154 FLCTSDDFLQALQRIKAVNRAAHID---------------ADYWCTIQPL-LYTKTSLEMQQRYVELGPTHAQFGLDEDVPNIIGDYVYIA-------------NKNKIGDRVLVNSTVPNARQYAKTGCPINIRPHVWRQALNVVINAEKQA-------HFMQLQALTTSSVYATDGMYLLDVQQTTDSSDYFPFEDHLRSVMLAFSRDASIRTQAAARLESPVSTTMSNGAST--AVPPSGVLPLSGLVMFAAPLCYLYNDPAHVYFIFREMYCRYWCQLHVISSQPNAILPLCKTFESLLVRTIPHVVHHLLQHGIT-PLAIAFPWIQSGFSGVLEIDQVLLLWDRVIGYDTLEILPIFAAALFTFRAKDLLLVLRADDVRDLFSEALEIQVLPILQHFLFP 519          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z578_9STRA2.380e-242100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CME0_9STRA6.910e-2136.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CE68_9STRA4.130e-1628.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
BLAST of jgi.p|Trimin1|348264 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJW0_9STRA0.000e+0100.00Rab-GAP TBC domain-containing protein n=1 Tax=Trib... [more]
A0A6H5JP51_9PHAE1.810e-10147.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J2WGK4_9STRA1.350e-9740.99Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D7FT85_ECTSI9.760e-9546.56Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
F0YBG1_AURAN1.090e-8745.60Rab-GAP TBC domain-containing protein (Fragment) n... [more]
A0A7S2H1X2_9STRA1.040e-7847.74Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3YGJ5_HETAK1.190e-7849.82Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A0G4ISX4_PLABS6.120e-7039.90Rab-GAP TBC domain-containing protein n=1 Tax=Plas... [more]
A0A1V9YY17_9STRA3.520e-6237.50Rab-GAP TBC domain-containing protein n=1 Tax=Achl... [more]
A0A067CZ08_SAPPC5.100e-6136.79Rab-GAP TBC domain-containing protein n=2 Tax=Sapr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:38595..45985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348264|estExt_Genemark1.C_Ctg_220007
Hectar predicted targeting categorychloroplast
TranscriptId348586
TrackFilteredModels1
ProteinId348264
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348264gene_6317Tribonema minus UTEX_B_3156 geneContig_22 38595..45985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348264Trimin1|348264|estExt_Genemark1.C_Ctg_220007Tribonema minus UTEX_B_3156 polypeptideContig_22 38619..45985 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6317_1exon_6317_1Tribonema minus UTEX_B_3156 exonContig_22 38595..39070 +
exon_6317_2exon_6317_2Tribonema minus UTEX_B_3156 exonContig_22 42474..42768 +
exon_6317_3exon_6317_3Tribonema minus UTEX_B_3156 exonContig_22 42828..42869 +
exon_6317_4exon_6317_4Tribonema minus UTEX_B_3156 exonContig_22 42941..42982 +
exon_6317_5exon_6317_5Tribonema minus UTEX_B_3156 exonContig_22 43967..44044 +
exon_6317_6exon_6317_6Tribonema minus UTEX_B_3156 exonContig_22 44201..44373 +
exon_6317_7exon_6317_7Tribonema minus UTEX_B_3156 exonContig_22 44439..44501 +
exon_6317_8exon_6317_8Tribonema minus UTEX_B_3156 exonContig_22 45835..45985 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6317UTR5_6317Tribonema minus UTEX_B_3156 five_prime_UTRContig_22 38595..38618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6317CDS_6317Tribonema minus UTEX_B_3156 CDSContig_22 38619..39070 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6317 ID=mRNA_6317|Name=jgi.p|Trimin1|348264|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1320bp|location=Sequence derived from alignment at Contig_22:38595..45985+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGCGGTAGGCACAGGTGCAGGACATGACAGCCATGAGCACATGTACGCG
GATGTGCGTGCTCGCTGTGTGTGCCTTGGCTACATGCAATGCATTTGGCA
TGGGGCCTGCACGGCAGCTTCTGGCTCAGCCCCTGCGATCATCGATGACT
CATTACTGGAGTTCCACTGCACAGCCAGCAGCAGCGTCCACGCCTGCATG
CAACAGCTTGTCGATGGCCGTCCCTACTCAAGGGGAGGTGCAGGCGGTGG
TGGACGCTGCAATCAAGGCCATAGCAGCGGACAAGCCTGCCAAGGCCCTG
TTCGGCGGCGGCATTGACGTGAAGGGCGTGCAAGCTGCAGGCAAGCCGAA
GGAGGGCTGCGTGAACATACGATTTCTCATCAGAGGGAAGGAGGTGGCAA
AGGGGGTGGGCGATGCCAAGAGGCCCGGGGGCCAGGGTCAGGTGACGGCT
CAGACCGAAGGCGGGAAGCTGGTGAGGTGCTCCGCCGCGAGCGTCGCCGC
CAACTGGCGCTCCTGCTGCGCGGACGGCACGTGCGTCGGCGGCGCGTGTG
GCTCCGGCGCGCTGCCGCCAAGCGCGCGCGTCCTCTTCATCGGCAACTCC
TACGTGCGCGAGCTCGCGCAGGCGGCAGTGTGCCAGAACCTCGACCTCCT
GATGAGCATCACCGTCATGCCATACGCGCGCTTCTACGGGCATAGTATGC
TGGGCGGCGCGCGCCTGCCGCGGCCGCAGGCGTGGGCGTATTCGCGGGAG
GAGGGGCTGCGCGACCCGCAGGCGTGGGCGTATTCGCGGGAGGAGGGGCT
GAGCGACCCGCAGGCGTGGGCGTACTCGCGGGAGGAGGGGCTGCGCGACC
CGCAGGGCGTGCGCAAGCTGTTCGCGCCGGACGACGACGTGGCGGTGTAC
GACTTTGCCAACGGCGCGCGCGTGTTTGTTGCCGGCGTGCGCAAGCGGTT
CGCGCCGGACGACGACGTGGCGGTGTACGACTTTGCCAACGGCGCGCGCG
TGTTCGTCGCCGTCAACACGCCGCTCGCGTTCACGCCGCAGGCGGGCGCA
GGCGACGCGGAGCGCGCCCTCGGCCTGACCCCCCTCGCCTACTACCTGCG
CTTCAGGGGGAGGAATTTGGAGGAGCGCGCCCTCGGCCTGACCCCCCTCG
CCTTCCACCTGCGCGTCAGGTGGAGGGAGCTGACGGCGGTGGTGGTCAAC
CCCGGGAACCCGCTCGGGTGGGCGCGCGGAACTTTCTGCGCGCAGGAGAA
CCGCGCCAAGTGGCTGCGCGCGCCGCGCGCATTCGTCGCCGTCTGCGACT
ACCTGTCGGAGCGCGAGTGA
back to top

protein sequence of jgi.p|Trimin1|348264

>Trimin1|348264|estExt_Genemark1.C_Ctg_220007 ID=Trimin1|348264|estExt_Genemark1.C_Ctg_220007|Name=jgi.p|Trimin1|348264|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=432bp
MTAMSTCTRMCVLAVCALATCNAFGMGPARQLLAQPLRSSMTHYWSSTAQ
PAAASTPACNSLSMAVPTQGEVQAVVDAAIKAIAADKPAKALFGGGIDVK
GVQAAGKPKEGCVNIRFLIRGKEVAKGVGDAKRPGGQGQVTAQTEGGKLV
RCSAASVAANWRSCCADGTCVGGACGSGALPPSARVLFIGNSYVRELAQA
AVCQNLDLLMSITVMPYARFYGHSMLGGARLPRPQAWAYSREEGLRDPQA
WAYSREEGLSDPQAWAYSREEGLRDPQGVRKLFAPDDDVAVYDFANGARV
FVAGVRKRFAPDDDVAVYDFANGARVFVAVNTPLAFTPQAGAGDAERALG
LTPLAYYLRFRGRNLEERALGLTPLAFHLRVRWRELTAVVVNPGNPLGWA
RGTFCAQENRAKWLRAPRAFVAVCDYLSERE*
back to top

mRNA from alignment at Contig_22:38595..45985+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6317 ID=mRNA_6317|Name=jgi.p|Trimin1|348264|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7391bp|location=Sequence derived from alignment at Contig_22:38595..45985+ (Tribonema minus UTEX_B_3156 )
GCGCGGTAGGCACAGGTGCAGGACATGACAGCCATGAGCACATGTACGCG GATGTGCGTGCTCGCTGTGTGTGCCTTGGCTACATGCAATGCATTTGGCA TGGGGCCTGCACGGCAGCTTCTGGCTCAGCCCCTGCGATCATCGATGACT CATTACTGGAGTTCCACTGCACAGCCAGCAGCAGCGTCCACGCCTGCATG CAACAGCTTGTCGATGGCCGTCCCTACTCAAGGGGAGGTGCAGGCGGTGG TGGACGCTGCAATCAAGGCCATAGCAGCGGACAAGCCTGCCAAGGCCCTG TTCGGCGGCGGCATTGACGTGAAGGGCGTGCAAGCTGCAGGCAAGCCGAA GGAGGGCTGCGTGAACATACGATTTCTCATCAGAGGGAAGGAGGTGGCAA AGGGGGTGGGCGATGCCAAGAGGCCCGGGGGCCAGGGTCAGGTGACGGCT CAGACCGAAGGCGGGAAGCTGGTGAGGTGCTGGATTGATCTGGACAGCGG TTGGGGCAGGAGACTGTACATCATGGGCACGCCTTCGTAGGCTACCTGCA CTTGTGAGTAGCATAGACGGCATTATTGAAGTTGTTGCCGCATCTTGATA CAGGCACCCTGCACGCATTTCCTCGCTTTACACACCAAGTCTAGTGTGCT TACTCTTTAGTCTAGTATATGAGGAGCAGTTGCGGGTTTTGGACAGCCGA GAAGGGGTTAGTGCTGATTTGTGTTCCACACTCACAGTGCTTGTGATAGA CATGCGCACAGTGGGATAGACTAGGCATGCCGGCAGCATCATCGCGCGAT GGCGGTATGGTCACAAAGCTGTGCATCACCAGTCCAGTACAGTGTGCTGT GTGTTCGTAGACGAAATACTTGAGCGTCGAGGTCAATTCATGACAAATTC AATACATGACAAATTATTGCAACGCAGGTCTCAGTTCGGCACGTGACTTG CTCCTGATCCTGGTTAATGCTCACACATGACTGCTGTTGGTGTGCATACT TTGTGTGGCGGCGCCACGCCCAAATCCTGCTGCTTGTGCCCTAATGGACC ATTCATCAATGCGCAGCAGCTTTAAAACTTGCAACTGCATGCAATTGGAT GTCACAGTGCTGCCACAGTTTCATCGCTGTGATGGTTTTGGCGAACATGA TATGAAGCATCACATGATGGAATGAAGCATCACCTTGTGACGCGACTCTT GCACAACCAGCGTTTGGTTACTTGTTGGCAAGCTCTCTGGCCGCTGTAAA ATGAGGCTCAGGCCCTTGTGTTGCCGCATGCTTGCAATGAGGTGCATACG CAGAGCCGGATGGTTGGCATCCAGTCATGTACACACTATGTCTTTGTGGC AGTGACAACAATGTGACTGTGACAGCAGTGCTCCTCATACTACACGAAAC TTCAGGCTGTGCTTCGTACACATGCATTAGCATCTCAGGTAGACGCCATT AGAATGGTCCACACACACTTCACAGGTAACTTCAACCTCCTGACTTCAAG CCGCGGCGAGTCACGGACAATTGCGAGCAGTTCTTTTGACACTTGGGCGA CATGCGGCGGTGGAGGTGGTGGTGCGCTGGCACAGCAGTGGTAACGGCAA TGATATGCTGCTCGGTGACGTCGGAGCCTGAGTTGGAGGTGCATCGCAAG GAACCTCGAGCGACGCCCTCCGACTGCCCATTTATCAGGGGTAACTACAG GTGCGTTGGTGCATGTTTTCAAAGCACTGCTTGAGTGGCGTGGCCGCAGT CATGTTACTGTACTGCTTGCAAGCAAGCTACGCAAGTGCAGTATGCGTTT ACAACTGTCGGACCACATATCGACACATGACAATTGTCGACACACGAAAC TCCCTGTAAGCAAGACAACACCTTCGTCGATAGGCGTTGTAGCACTTGTA AGGGCGACTCTGTGCCTTTTTTTACATTATCCGGGTAGTTGGTTCGGCTG CAGCTACCAGTTTGGCCTTCAAAGATGCCTGATGCAAGCGGCTCAGACGC TCTGAGGTTCCGCAGCATCAAGCGGCACGAAGCAGCGCAGCCACTTCCTT TTGGGCATGAGAATTTACATGCAACTCTGATTAGCGTCCGTGTCATGCAA GCAGCAAAGAGAGTCAGAAAAGTATGTTGCGCTCCATGCGGTGGTGGCTG ACGTCTACGCTCATGCAGCTGGTTCAGGACTGCAGCGAGAGCAGGTCCCA ATTGCGGTTCGCAGTGTGCGGTGACACTTCGTGCTCCGAGCGCTGGGCAT GCGGCCCTGATGCTGCTCCGCGCCGGTGCCAGCACCTGTGCTGCGCAAAG CGGAAGAGGTCTTTGTGATAATGCGTACGCGACTGCTCTAAGCCAGATTG TGGAATGTCGGTCAATTGCATACGCTCGGTGACGACCATGCACATGGCCT AGCAGCCGTTTCCACGCTGTGGTGAAAGTTCACAGCAATTTGCAGTGAGT GGCCCCCTTCCGACATGTCCATCTGTTGGAAAGCAGGCTGTACATCAGTT AGCCAGGGTCACGACTTGCTATAGTCATGCAGCGCACGGTCACTACACAT TCATCAAGTGATTCCAGGGCTCACGGCATTATCCAGACGTTACCACCATG CTCTGCACCTGCTTGAGCAGCTCTTGTGACAATGCCGCCTCAGCCGCACT CTCACACATGGCCACATTGTCAGTACGCTGTGCATTTTTGGGAGATTCCC CTCCCACCACTGGCGCAGCCAACTCCCCTGCATCGCCTGCCGCAGCGCGT GTGCGCAGTCATCTGCAATGACGCCTGTTGCGGTCATTGGCATCACCCCA ATGATGTGTTCAGTGCCTAGTCTAGCCGCCTGCCTCTTTGGCAGTGACAA CGTTCCGGTGTGAGTGCTGCATATACCTCGCGGCTCACGTGCCGACGCAA CTGCAGCGCCTCATGCGACTGAAAGATCGCGTGTCATCAGCCTCAATACT TCAGTGCCTTCAGGCGCTTCCGTGTTGACTCGACCAACCAAGTGTCGTCA TATACACGTCGATGTGCGTGTACTTAGCAGATGCAGTACAGATGTACCCA CACAAGAAGGGAGTTGCAGTTGAAGTATTAGCACGCCGGCGATTTCGCTC GCCGGCTCCATGCCTTCGCCCCTGGGCTCGCCACTGCGGACGCTTGCCGC TGCACAAACACAAACGCCGGTGCCGTGCCCTCGTTATCGCATAGGGCTCG TGCCCAGTGATCGCGCGCCACCAGTCAGTTAGCCGTGCATTCAACATGTC AGCCGTCTGCTTGTCACCCAGTGTGCTTGTTCTGCAAGCCGCCTGAACCA TGCCGCCGCAGCCACCTGACCGTGCAGCTAGCCGCCAGCTGATGAGGCCC CATGCACTGCCGCACGCAGCGCCGCCGCTGGCTTTTTACTCCCACCGCAG CACTTGGAAGTGACCGCGTTCGCCTTGCCTCCACTGTTTTGCACACCACC CGCACCGCCCGTCCTCACGCATGTGTGCAAACGCGCATGTTTGTGACATG GAGGTTTGCATTGCAGGTGCTCGGCCGCACGCATCGCCGCCAACTGCCGC TCCTGCTTCGCATCAGCTCCCGTACGCCAATCTGCACTCTATCTGCACCC TGCTATGCGTCCGCCCCTGCTGTTGTATGCCTGGACCCCATGTCTGCCCT ACATGCGTACATGCCCGTGTTGCAGGTGCTCGGCCGCGCGCGTCGCCGCC AACTGGCGCTCCTGCTGCACGCACAGAACGTGCATGGCGCTACCGCCCAC TCACGCTGCCGCCACCGCACTCACTGCGTATCAGCTGCCGCACACCCTGC TCTGCATCTGCTCATCCTCCTTGATACCTGCAAGCCATATGTATAGCCAA GTATATCTATGCGATGTGCGTATGCGCAGGTGCTCCGCCGCGAGCGTCGC CGCCAACTGGCGCTCCTGCTGCGCGGACGGCACGTGCGTCGGCGGCGCGT GTGGCTCCGGCGCGCTGCCGCCAAGCGCGCGCGTCCTCTTCATCGGCAAC TCCTACGTGCGCGAGCTCGCGCAGGCGGCAGTGTGCCAGAACCTCGACCT CCTGATGAGCATCACCGTCATGCCATACGCGCGCTTCTACGGGCATAGTA TGCTGGGCGGCGCGCGCCTGCCGCGGCCGCAGGCGTGGGCGTATTCGCGG GAGGAGGGGCTGCGCGACCCGCAGGTGCGTGGTATAGGAAGGTTCAACTT CATCTTCAACGACAACGCCTGCCGCGGCCGCAGGCGTGGGCGTATTCGCG GGAGGAGGGGCTGAGCGACCCGCAGGTGCGTGGGGTGGGGTAGGTATAGG GAAAGTTCAACTTTATCTTCAACAACAACGCCTGCCGCGGCCGCAGGCGT GGGCGTACTCGCGGGAGGAGGGGCTGCGCGACCCGCAGGTGCGCATGGGG TAGGTAGGCATATATAAGACGTCAACTTCATCTTCAACACCAGTAGCACT CGGATAAGTTATGGGTAGGTATAGGGAAAGTTCAACTTCATCTTCAATAA TAACGTCACTGTTGAGCTCATCTCGAACGCCACCATAACTTGTCCAGTGG GTCTGGTACCCAGCTGTCTAGTCAGTCACAAGTAGGACACTTTAACTTCA TCGTCAACAACAACGTCATTGTTGAATTCGTCCAATTCCATCTCGAACAC CGACATCACTTATCGAGTGAGTCTCGTACATGAACATCAATCATCACTTG TCTGAGTAGGTATGGTATGTATTGTTTGTGTTGTTGCCGGCAGCGTGCCA TACCCTTGCAGCTCGAACACCGGCTGGGCTGTACGCCCAGGCACTTCTCA AGGTGCTTTTTTGGGGGGGCTCTTGGAGCATTACAATGATTGTGTTATGG GCCGCAATCACCCGGGGCGTGCGTGAACGCCATGCAATGCAGCGTGTGGC GTGGTCTATTGACAAACGTGTAATCTTGCGCACGTGCTCGCACAGCCAGG GGCGCGGCGATGTGCTGCATGTAGATATGCAAACTGCCCATCAAGATGGC GATGGCCTGTACTGCACTATTCCTGACATCCCTCATCCGTGTGCAGACGG CTACGCAACGCCGACCCACAATGCGGCAGTGACCACCTTCGCCTGCAGCT GATGCTTCAGCACTTGCAGCATTCGGACCTGCATTGCCGCGCGTGTGCTG TCAAACCCAGCAGTACCGCACCTTCTCCTCATTTTCAGCGCTGCTTCGTA TATTCTGACGCCTCCGCATCAGGGCGTGCGCAAGCATATATATGATACTT CGAAGTACTTTCATGTTTGCAGTTCTCAGGTTGCAATGCTGCGCGCGAGC TGCCACAACCCAGCGGTACCGCACCATCTCCTCAAGTTTCAGCGCTGCTC CGTATATCATGCCCTGCATCAGGGCGTGCGCAAGCTGTTCGCGCCGGACG ACGACGTGGCGGTGTACGACTTTGCCAACGGCGCGCGCGTGTTTGTTGCC GTCAACACATGTGGCGGTGTCCGACTTTGCCTGCAAATAATGCCTCAGTG CTTGCGATATTCAGACCTGCAATGTCGCGCGCAGGCAGCGGTACCACACC ATCTCCTCACTACAGCGCTGCTCCGTATTTACAATATCATCACGTTCTCG CATCAGGGCGTGCGCAAGCGGTTCGCGCCGGACGACGACGTGGCGGTGTA CGACTTTGCCAACGGCGCGCGCGTGTTCGTCGCCGTCAACACGCCGCTCG CGTTCACGCCGCAGGCGGGCGCAGGCGACGCGGAGCGCGCCCTCGGCCTG ACCCCCCTCGCCTACTACCTGCGCTTCAGGTTCGCCACAGCTATCGTAAC AGGTCGCTTATGTATGCTAACCCTATCTGTAACATGCCCCCGAGGGGGAG GAATTTGGAGGAGCGCGCCCTCGGCCTGACCCCCCTCGCCTTCCACCTGC GCGTCAGGTTTGCTGCGGCGAGTGCATGTGGCCATTACAATTTTCTTGAA GTTTTCTAGCCCACACCGGGTGGGGATGTGTGCCGGACGGGCGTGCAGCC CTCGCGTGCTACCTGCGCTCGAGGTGTGCCGCAGCTATTACAAGTACGTA GTCACTTGCGTAAGCTGACCCCAACGCTAACCCACGCTGGGGGGGCGGGG ACGGAGCATGCTGTGCACGGTCAATGCGCAGTGCATGTATGTGTGACGGA CTAACCCTAACCCTAACCCTGACCCCAGGGCGCCTCTGGCCCGGCGCCGC TCACCTGCTATTTGCACGATGGCACATTGTAGTCCTCGGCGCCGAACTTG CCATCTGTTGTCGATCTTGCAGACTTGCTGAGCCGCTGTTGCATCTGCTA GCGCCCTTGACGATGCTCGTGTGGTGGTGTCAGGCCCCGTAGGGCAGGCC CCAACAGTTGTGTGCACGACGTGCGCCCACTGTAAACCCAATGATGATGC ATGAGTCAGATCATCGGCGCGCACGATGTGCCAGCTGTCGCACCGGACAT TGGGAGGCGGGACAGCCGCTGCGCGTGCCGTCCTACTGCCGACGTGCGCT CGCTGCCTACTTGTGCATGCGTCACATGACCTGCACGCACTCTGCGTCCG CTGTTGCTTTCGACATGAGAGCGTCGGGCAGCCGCTGTGCGTTTCTCTCC GCACGGTCGTACGCACGCGTGCCGCCCGTGCCAATCCCACAAGGACGGCA GGGAAATGCGGTCCCCATGCAGTTCTGATGCATGCTTCTCTATTGTCGGC GTCCGCTGCTGCAGTTCTCGTACATTCTTCGCACAAGTATGCATGCGACA TTTCTCATCAGAATGGAAATGCAACATTTCTCATCAGGATGAAAATGCTG CGAGACGACTGAATCCAAAACACCAAACGTGATTTCCCCAACACTGTTTT GCCCATAACAACATTTCATCAGCAGGTAAAGATAGGGTGGGTATGTATAT ATATATCGTTGAGAACTGCTCATCGCCTCCACGCTGCGCCAGGTGGAGCG AGCTGACAATGCAATTCTGATGTATATTTCTCTGATGGTGTACGCTGCTG CATTCGTTAAGACACATTTTTTGCACAAACATGAGTATGCATGCAACATA ATGTTGACATTTATCGGAACGTAGGATGATTACCTGCATGACAACAGAGT CCGAAACGCCACAAGTGTTTTTCCAACACCGTTTTGCCTCTGATTACAGT TCATCAGAAGGTATAGGTAGGGTAGGTACACATATATATGTATAGTTGAG CACTGCTCATCGTTTCCACTCTGCACTGCGGCTGCGCCAGGTGGAGGGAG CTGACGGCGGTGGTGGTCAACCCCGGGAACCCGCTCGGGTGGGCGCGCGG AACTTTCTGCGCGCAGGAGAACCGCGCCAAGTGGCTGCGCGCGCCGCGCG CATTCGTCGCCGTCTGCGACTACCTGTCGGAGCGCGAGTGA
back to top

Coding sequence (CDS) from alignment at Contig_22:38595..45985+

>mRNA_6317 ID=mRNA_6317|Name=jgi.p|Trimin1|348264|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1296bp|location=Sequence derived from alignment at Contig_22:38595..45985+ (Tribonema minus UTEX_B_3156 )
ATGACAGCCATGAGCACATGTACGCGGATGTGCGTGCTCGCTGTGTGTGC
CTTGGCTACATGCAATGCATTTGGCATGGGGCCTGCACGGCAGCTTCTGG
CTCAGCCCCTGCGATCATCGATGACTCATTACTGGAGTTCCACTGCACAG
CCAGCAGCAGCGTCCACGCCTGCATGCAACAGCTTGTCGATGGCCGTCCC
TACTCAAGGGGAGGTGCAGGCGGTGGTGGACGCTGCAATCAAGGCCATAG
CAGCGGACAAGCCTGCCAAGGCCCTGTTCGGCGGCGGCATTGACGTGAAG
GGCGTGCAAGCTGCAGGCAAGCCGAAGGAGGGCTGCGTGAACATACGATT
TCTCATCAGAGGGAAGGAGGTGGCAAAGGGGGTGGGCGATGCCAAGAGGC
CCGGGGGCCAGGGTCAGGTGACGGCTCAGACCGAAGGCGGGAAGCTGGTG
AGGTGCTCCGCCGCGAGCGTCGCCGCCAACTGGCGCTCCTGCTGCGCGGA
CGGCACGTGCGTCGGCGGCGCGTGTGGCTCCGGCGCGCTGCCGCCAAGCG
CGCGCGTCCTCTTCATCGGCAACTCCTACGTGCGCGAGCTCGCGCAGGCG
GCAGTGTGCCAGAACCTCGACCTCCTGATGAGCATCACCGTCATGCCATA
CGCGCGCTTCTACGGGCATAGTATGCTGGGCGGCGCGCGCCTGCCGCGGC
CGCAGGCGTGGGCGTATTCGCGGGAGGAGGGGCTGCGCGACCCGCAGGCG
TGGGCGTATTCGCGGGAGGAGGGGCTGAGCGACCCGCAGGCGTGGGCGTA
CTCGCGGGAGGAGGGGCTGCGCGACCCGCAGGGCGTGCGCAAGCTGTTCG
CGCCGGACGACGACGTGGCGGTGTACGACTTTGCCAACGGCGCGCGCGTG
TTTGTTGCCGGCGTGCGCAAGCGGTTCGCGCCGGACGACGACGTGGCGGT
GTACGACTTTGCCAACGGCGCGCGCGTGTTCGTCGCCGTCAACACGCCGC
TCGCGTTCACGCCGCAGGCGGGCGCAGGCGACGCGGAGCGCGCCCTCGGC
CTGACCCCCCTCGCCTACTACCTGCGCTTCAGGGGGAGGAATTTGGAGGA
GCGCGCCCTCGGCCTGACCCCCCTCGCCTTCCACCTGCGCGTCAGGTGGA
GGGAGCTGACGGCGGTGGTGGTCAACCCCGGGAACCCGCTCGGGTGGGCG
CGCGGAACTTTCTGCGCGCAGGAGAACCGCGCCAAGTGGCTGCGCGCGCC
GCGCGCATTCGTCGCCGTCTGCGACTACCTGTCGGAGCGCGAGTGA
back to top