Trimin1|348246|estExt_Genemark1.C_Ctg_210090 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348246
Unique NameTrimin1|348246|estExt_Genemark1.C_Ctg_210090
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length270
Homology
BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A835Z2J6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J6_9STRA)

HSP 1 Score: 531 bits (1367), Expect = 1.860e-190
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0
Query:    1 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAKHTADGTSDRLLCQDVKFSAQRTGNNEKWQRQGHDNERGGKRQGDVRDEIRQLEVALLKLLVARRRRRLGPSVAAVHEEGSFAHSFTFNNTWCHQHDQAAVCGPPGSPDRGGHRCFYAAKAGTSRFAAQCPQNAQYDDNVCLSDQERELFSTSTPGDYLHGICYKARWSERRMGGGPECPDCQRHADPAASATAXXXXTASSLYASPPKKPRTSRT 269
            MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAKHTADGTSDRLLCQDVKFSAQRTGNNEKWQRQGHDNERGGKRQGDVRDEIRQLEVALLKLLVARRRRRLGPSVAAVHEEGSFAHSFTFNNTWCHQHDQAAVCGPPGSPDRGGHRCFYAAKAGTSRFAAQCPQNAQYDDNVCLSDQERELFSTSTPGDYLHGICYKARWSERRMGGGPECPDCQRHADPAASATAXXXXTASSLYASPPKKPRTSRT
Sbjct:    1 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAKHTADGTSDRLLCQDVKFSAQRTGNNEKWQRQGHDNERGGKRQGDVRDEIRQLEVALLKLLVARRRRRLGPSVAAVHEEGSFAHSFTFNNTWCHQHDQAAVCGPPGSPDRGGHRCFYAAKAGTSRFAAQCPQNAQYDDNVCLSDQERELFSTSTPGDYLHGICYKARWSERRMGGGPECPDCQRHADPAASATAXXXXTASSLYASPPKKPRTSRT 269          
BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A835Z1D8_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1D8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.710e-18
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    1 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAKHTADGT 60
            M SSGP K+ AT+DQVVGQVK TVGKTIGNH MEAEG+ Q  HGTAEK AA AK TA+GT
Sbjct:    1 MSSSGPSKISATKDQVVGQVKATVGKTIGNHTMEAEGNMQHTHGTAEKHAATAKQTAEGT 60          
BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A835Z1U0_9STRA (DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1U0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.010e-15
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 0
Query:    1 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAKHTADGTSD 62
            M SSGP K+ AT+DQV+GQVK TVGKTIGNH+MEAEG+ Q  HGT EK+ AAAK   +G  D
Sbjct:    1 MSSSGPSKINATKDQVIGQVKATVGKTIGNHQMEAEGNVQHQHGTTEKEVAAAKQKGEGLVD 62          
BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A835YX54_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX54_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.930e-12
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 0
Query:    1 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAKHTADG 59
            M SSGP K+  T+D+V+G  K T+G TIGNH+MEAEGH Q   GTA+K+AA  K  A+G
Sbjct:    1 MSSSGPSKMTGTKDEVLGSAKATIGSTIGNHQMEAEGHTQNKGGTAQKEAAGTKQKAEG 59          
BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A835YNR6_9STRA (Putative cruciform DNA binding protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.530e-11
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 0
Query:    1 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAK 54
            M SSGP K+  T+D+++G  K T+G TIGNH+MEAEGH Q   GTAEK AAAAK
Sbjct:    1 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAK 54          
BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A836CHS6_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHS6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.110e-11
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 0
Query:    1 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAKHTA 57
            M SSGP KV  T+D+V+G  K T+G TIGNH+MEAEG+ Q  HGT E  AA AK  A
Sbjct:    1 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQA 57          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348246 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835Z2J6_9STRA1.860e-190100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1D8_9STRA4.710e-1875.00Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
A0A835Z1U0_9STRA1.010e-1566.13DNA binding protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A835YX54_9STRA7.930e-1257.63Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
A0A835YNR6_9STRA1.530e-1162.96Putative cruciform DNA binding protein n=2 Tax=Tri... [more]
A0A836CHS6_9STRA4.110e-1159.65Putative cruciform DNA binding protein n=1 Tax=Tri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 242..269
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 229..269
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..49
IPR036629YjbJ superfamilySUPERFAMILY69047Hypothetical protein YjbJcoord: 13..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_21contigContig_21:876704..880898 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348246mRNA_7197Tribonema minus UTEX_B_3156 mRNAContig_21 876664..881214 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348246|estExt_Genemark1.C_Ctg_210090 ID=Trimin1|348246|estExt_Genemark1.C_Ctg_210090|Name=jgi.p|Trimin1|348246|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=270bp
MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQA
AAAKHTADGTSDRLLCQDVKFSAQRTGNNEKWQRQGHDNERGGKRQGDVR
DEIRQLEVALLKLLVARRRRRLGPSVAAVHEEGSFAHSFTFNNTWCHQHD
QAAVCGPPGSPDRGGHRCFYAAKAGTSRFAAQCPQNAQYDDNVCLSDQER
ELFSTSTPGDYLHGICYKARWSERRMGGGPECPDCQRHADPAASATATST
STASSLYASPPKKPRTSRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036629YjbJ_sf