mRNA_7197 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348246
Unique Name	mRNA_7197
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A835Z2J6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J6_9STRA)

HSP 1 Score: 525 bits (1352), Expect = 3.790e-186
Identity = 264/266 (99.25%), Postives = 264/266 (99.25%), Query Frame = 2

Query:   41 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAKHTADGTSDRLLCQDVKFSAQRTGNNEKWQRQGHDNERGGKRQGDVRDEIRQLEVALLKLLVARRRRRLGPSVAAVHEEGSFAHSFTFNNTWCHQHDQAAVCGPPGSPDRGGHRCFYAAKAGTSRFAAQCPQNAQYDDNVCLSDQERELFSTSTPGDYLHGICYKARWSERRMGGGPECPDCQRHADPAASATXXXXXXASSLYASPPKKPRT 838
            MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAKHTADGTSDRLLCQDVKFSAQRTGNNEKWQRQGHDNERGGKRQGDVRDEIRQLEVALLKLLVARRRRRLGPSVAAVHEEGSFAHSFTFNNTWCHQHDQAAVCGPPGSPDRGGHRCFYAAKAGTSRFAAQCPQNAQYDDNVCLSDQERELFSTSTPGDYLHGICYKARWSERRMGGGPECPDCQRHADPAASAT XXXX ASSLYASPPKKPRT
Sbjct:    1 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAKHTADGTSDRLLCQDVKFSAQRTGNNEKWQRQGHDNERGGKRQGDVRDEIRQLEVALLKLLVARRRRRLGPSVAAVHEEGSFAHSFTFNNTWCHQHDQAAVCGPPGSPDRGGHRCFYAAKAGTSRFAAQCPQNAQYDDNVCLSDQERELFSTSTPGDYLHGICYKARWSERRMGGGPECPDCQRHADPAASATAXXXXTASSLYASPPKKPRT 266

[Close]

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A835Z1D8_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1D8_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.730e-17
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 2

Query:   41 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAKHTADGT 220
            M SSGP K+ AT+DQVVGQVK TVGKTIGNH MEAEG+ Q  HGTAEK AA AK TA+GT
Sbjct:    1 MSSSGPSKISATKDQVVGQVKATVGKTIGNHTMEAEGNMQHTHGTAEKHAATAKQTAEGT 60

[Close]

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A835Z1U0_9STRA (DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1U0_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.000e-15
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 2

Query:   41 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAKHTADGTSD 226
            M SSGP K+ AT+DQV+GQVK TVGKTIGNH+MEAEG+ Q  HGT EK+ AAAK   +G  D
Sbjct:    1 MSSSGPSKINATKDQVIGQVKATVGKTIGNHQMEAEGNVQHQHGTTEKEVAAAKQKGEGLVD 62

[Close]

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A835YX54_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX54_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.620e-11
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 2

Query:   41 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAKHTADG 217
            M SSGP K+  T+D+V+G  K T+G TIGNH+MEAEGH Q   GTA+K+AA  K  A+G
Sbjct:    1 MSSSGPSKMTGTKDEVLGSAKATIGSTIGNHQMEAEGHTQNKGGTAQKEAAGTKQKAEG 59

[Close]

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A835YNR6_9STRA (Putative cruciform DNA binding protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR6_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.040e-11
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 2

Query:   41 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAK 202
            M SSGP K+  T+D+++G  K T+G TIGNH+MEAEGH Q   GTAEK AAAAK
Sbjct:    1 MSSSGPSKMTGTKDEILGSAKATIGSTIGNHQMEAEGHTQNKAGTAEKNAAAAK 54

[Close]

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A836CHS6_9STRA (Putative cruciform DNA binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHS6_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 7.830e-11
Identity = 34/57 (59.65%), Postives = 40/57 (70.18%), Query Frame = 2

Query:   41 MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQAAAAKHTA 211
            M SSGP KV  T+D+V+G  K T+G TIGNH+MEAEG+ Q  HGT E  AA AK  A
Sbjct:    1 MSSSGPSKVTGTKDEVLGSAKATIGSTIGNHKMEAEGNAQHQHGTLEAHAATAKQQA 57

[Close]

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A835Z7M5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7M5_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.210e-45
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1

Query:    1 MGGDDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVILVCILAAAGVAAAVFLQ 246
            MGGDDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVILVCILAAAGVAAAVFLQ
Sbjct:    1 MGGDDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVILVCILAAAGVAAAVFLQ 82

[Close]

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A8K1FGD4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGD4_PYTOL)

HSP 1 Score: 58.9 bits (141), Expect = 7.600e-9
Identity = 37/70 (52.86%), Postives = 43/70 (61.43%), Query Frame = 1

Query:   10 DDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVILVCILAAA 219
            DDG +ASELRQRY RGG  +DS+LSAAQLRARY I      G   K   +SS    I   V+ V +LA A
Sbjct:    3 DDGMTASELRQRYERGGLVRDSDLSAAQLRARYAIP-----GNTFKEDPSSSNMMMIVGAVVAVVVLAGA 67

[Close]

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A0P1AF08_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AF08_PLAHL)

HSP 1 Score: 58.2 bits (139), Expect = 1.440e-8
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1

Query:   10 DDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVILVCI 207
            DDG SAS+LRQRY RGG+ +D +LSAAQLR+RY IA        +K  A+S+    +A +V+LV +
Sbjct:    2 DDGLSASDLRQRYERGGSVRDCDLSAAQLRSRYAIAGNTF----EKQQADSNATIIVAVIVVLVIL 63

[Close]

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A2D4BS94_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BS94_PYTIN)

HSP 1 Score: 58.2 bits (139), Expect = 1.510e-8
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1

Query:   10 DDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIAN---KPD 129
            DDG++ASELRQRY RGG+ +D +LSAAQLRARY I N   KPD
Sbjct:    3 DDGYTASELRQRYERGGSVQDCDLSAAQLRARYAIPNNTFKPD 45

[Close]

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A0G4H4G1_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H4G1_VITBC)

HSP 1 Score: 56.2 bits (134), Expect = 9.170e-8
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 1

Query:   10 DDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVIL 198
            DDG SASELR+RY  GG+A DSELSAAQLRAR+ + N+ +   D  GG      + IA +V L
Sbjct:    3 DDGLSASELRRRYGPGGSAPDSELSAAQLRARHNVQNR-EFRADDGGGVLMYVVAGIALIVFL 64

[Close]

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A1W0A1W3_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1W3_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 6.290e-7
Identity = 37/78 (47.44%), Postives = 45/78 (57.69%), Query Frame = 1

Query:   10 DDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVILVCILAAAGVAAAVFL 243
            DDG++A+ELR RY RGGT  DS+LSAAQLR+RY I         +K       QS+   M+       AAGVA AV L
Sbjct:    3 DDGYTATELRSRYGRGGTVGDSDLSAAQLRSRYSI---------EKNTFKDHPQSNKTVMI-------AAGVAIAVIL 64

[Close]

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A2P4WVY7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WVY7_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 6.440e-7
Identity = 31/67 (46.27%), Postives = 39/67 (58.21%), Query Frame = 1

Query:   10 DDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVILVCIL 210
            DDG +ASELRQRY RGG+ +D +LSAAQLR+RY I           G      QS    MVI+  ++
Sbjct:    2 DDGMTASELRQRYERGGSVRDCDLSAAQLRSRYAI----------PGNTFKEKQSDTNAMVIIAAVV 58

[Close]

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A225X142_9STRA (Microfibrillar-associated protein 1 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X142_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 9.620e-7
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1

Query:   10 DDGFSASELRQRYSRGGTAKDSELSAAQLRARYGIANKPDVGMDKKGGANSSGQSSIATMVILVCIL 210
            DDG +ASELRQRY RGG+ +DS+LSAAQLR+RY I         K+  ++S+    IA +V+L  I+
Sbjct:    2 DDGMTASELRQRYERGGSVRDSDLSAAQLRSRYAIPGNTF----KEKQSDSNTMMIIAAIVVLTSIM 64

[Close]

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: A0A485LRJ3_9STRA (Aste57867_24848 protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LRJ3_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.270e-6
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1

Query:    7 GDDGFSASELRQRYSRGGTAKDSELSAAQLRARYGI 114
            GDDG +ASELR RY RGG+ +D +LSAAQLR+RY I
Sbjct:    2 GDDGMTASELRSRYGRGGSVRDCDLSAAQLRSRYAI 37

[Close]

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Match: W2LD83_PHYPR (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2LD83_PHYPR)

HSP 1 Score: 52.0 bits (123), Expect = 3.530e-6
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1

Query:   10 DDGFSASELRQRYSRGGTAKDSELSAAQLRARYGI 114
            DDG SASELRQRY RGG+ +DS+LSAAQ  +RY I
Sbjct:    2 DDGMSASELRQRYERGGSVRDSDLSAAQXXSRYAI 36

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348246 vs. uniprot
BLAST of jgi.p|Trimin1|348246 vs. uniprot

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6


Match Name	E-value	Identity	Description
A0A835Z2J6_9STRA	3.790e-186	99.25	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835Z1D8_9STRA	1.730e-17	75.00	Putative cruciform DNA binding protein n=1 Tax=Tri...	[more]
A0A835Z1U0_9STRA	3.000e-15	66.13	DNA binding protein n=1 Tax=Tribonema minus TaxID=...	[more]
A0A835YX54_9STRA	1.620e-11	57.63	Putative cruciform DNA binding protein n=1 Tax=Tri...	[more]
A0A835YNR6_9STRA	3.040e-11	62.96	Putative cruciform DNA binding protein n=2 Tax=Tri...	[more]
A0A836CHS6_9STRA	7.830e-11	59.65	Putative cruciform DNA binding protein n=1 Tax=Tri...	[more]

BLAST of jgi.p|Trimin1|348246 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13


Match Name	E-value	Identity	Description
A0A835Z7M5_9STRA	1.210e-45	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A8K1FGD4_PYTOL	7.600e-9	52.86	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A0P1AF08_PLAHL	1.440e-8	50.00	Uncharacterized protein n=1 Tax=Plasmopara halsted...	[more]
A0A2D4BS94_PYTIN	1.510e-8	69.77	Uncharacterized protein n=1 Tax=Pythium insidiosum...	[more]
A0A0G4H4G1_VITBC	9.170e-8	53.97	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]
A0A1W0A1W3_9STRA	6.290e-7	47.44	Uncharacterized protein n=1 Tax=Thraustotheca clav...	[more]
A0A2P4WVY7_9STRA	6.440e-7	46.27	Uncharacterized protein n=1 Tax=Phytophthora palmi...	[more]
A0A225X142_9STRA	9.620e-7	49.25	Microfibrillar-associated protein 1 n=1 Tax=Phytop...	[more]
A0A485LRJ3_9STRA	1.270e-6	69.44	Aste57867_24848 protein n=2 Tax=Aphanomyces TaxID=...	[more]
W2LD83_PHYPR	3.530e-6	71.43	Uncharacterized protein n=8 Tax=Phytophthora TaxID...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_21	contig	Contig_21:876664..881214 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348246\|estExt_Genemark1.C_Ctg_210090
Hectar predicted targeting category	other localisation
TranscriptId	348568
Track	FilteredModels1
ProteinId	348246

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348246	gene_7197	Tribonema minus UTEX_B_3156	gene	Contig_21 876664..881214 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348246	Trimin1\|348246\|estExt_Genemark1.C_Ctg_210090	Tribonema minus UTEX_B_3156	polypeptide	Contig_21 876704..880898 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_7197_1	exon_7197_1	Tribonema minus UTEX_B_3156	exon	Contig_21 876664..876727 +
exon_7197_2	exon_7197_2	Tribonema minus UTEX_B_3156	exon	Contig_21 877002..877086 +
exon_7197_3	exon_7197_3	Tribonema minus UTEX_B_3156	exon	Contig_21 877651..877742 +
exon_7197_4	exon_7197_4	Tribonema minus UTEX_B_3156	exon	Contig_21 879196..879390 +
exon_7197_5	exon_7197_5	Tribonema minus UTEX_B_3156	exon	Contig_21 880485..881214 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_7197	UTR5_7197	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_21 876664..876703 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_7197	CDS_7197	Tribonema minus UTEX_B_3156	CDS	Contig_21 876704..876727 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_7197	UTR3_7197	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_21 880899..881214 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_21:876664..881214+
coding sequence from alignment at Contig_21:876664..881214+

spliced messenger RNA

>mRNA_7197 ID=mRNA_7197|Name=jgi.p|Trimin1|348246|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1166bp|location=Sequence derived from alignment at Contig_21:876664..881214+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCGGCGATACTACACGCGGGCAGACCACAAGCACGCTCCATGATCTCGT
CAGGCCCCATCAAGGTCCTTGCCACCAGAGACCAGGTCGTCGGCCAGGTC
AAAGTCACCGTTGGCAAGACCATCGGCAACCACCGCATGGAGGCAGAAGG
CCACAAACAGCAAGATCACGGCACTGCGGAGAAGCAGGCAGCCGCCGCCA
AGCACACTGCGGATGGTACCAGCGATAGGCTGCTCTGCCAGGACGTGAAG
TTTAGCGCGCAGAGAACAGGCAACAACGAGAAGTGGCAGCGGCAGGGTCA
CGACAACGAGAGAGGCGGCAAGCGGCAGGGCGACGTGCGGGACGAGATTC
GGCAACTTGAAGTGGCGCTGTTGAAGTTGTTGGTGGCGCGGCGGCGGCGG
CGTCTGGGTCCGTCTGTCGCGGCGGTGCATGAAGAGGGCTCCTTCGCGCA
CTCCTTCACCTTCAACAACACGTGGTGCCACCAGCACGACCAAGCAGCGG
TATGCGGCCCCCCGGGCTCGCCCGACCGCGGTGGCCACCGCTGCTTCTAC
GCCGCCAAGGCCGGCACCTCGCGCTTCGCCGCGCAGTGCCCGCAGAACGC
GCAGTATGACGACAACGTGTGCCTCAGCGACCAGGAGCGCGAGCTCTTCA
GCACGAGCACGCCCGGCGACTACCTGCACGGCATCTGCTACAAGGCGCGC
TGGAGCGAGCGGCGCATGGGCGGCGGGCCGGAGTGCCCCGACTGCCAGCG
GCACGCCGACCCCGCCGCCTCCGCGACTGCGACTTCAACTTCAACTGCCA
GTTCGTTGTACGCGTCGCCGCCCAAGAAGCCGCGCACCAGCAGGACGTGA
GCTTCAGCAGCGGCGGCGGCGCTGCGCGAATTACGCCACTCGAGTATCTC
TGTTCTTTCCGTCCTGGCCCAGCCCAGGGACAGCAGTTTTTTTGTCTGTC
CTGGCTCAGGGGCATCGATGCGTTTCGTGCGCAAACGTGTGACCGCGCCG
CGCGCGGTGGCGCTCCCGTATGCATAGGCCCAACACTTTCACGCCGAGAT
GAGAGGCGCATGATCATGCGGCACGTGACAGTCCCCCGTATTCATAGACC
GGAATCAACACGACGTGGTTGGTAATGGCGACTGCTCGCAACTTCAATTC
ACCGTTCCCACATCTC

protein sequence of jgi.p|Trimin1|348246

>Trimin1|348246|estExt_Genemark1.C_Ctg_210090 ID=Trimin1|348246|estExt_Genemark1.C_Ctg_210090|Name=jgi.p|Trimin1|348246|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=270bp
MISSGPIKVLATRDQVVGQVKVTVGKTIGNHRMEAEGHKQQDHGTAEKQA
AAAKHTADGTSDRLLCQDVKFSAQRTGNNEKWQRQGHDNERGGKRQGDVR
DEIRQLEVALLKLLVARRRRRLGPSVAAVHEEGSFAHSFTFNNTWCHQHD
QAAVCGPPGSPDRGGHRCFYAAKAGTSRFAAQCPQNAQYDDNVCLSDQER
ELFSTSTPGDYLHGICYKARWSERRMGGGPECPDCQRHADPAASATATST
STASSLYASPPKKPRTSRT*

mRNA from alignment at Contig_21:876664..881214+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7197 ID=mRNA_7197|Name=jgi.p|Trimin1|348246|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4551bp|location=Sequence derived from alignment at Contig_21:876664..881214+ (Tribonema minus UTEX_B_3156 )
TGCGGCGATACTACACGCGGGCAGACCACAAGCACGCTCCATGATCTCGT
CAGGCCCCATCAAGGTACGTCCATGGAGCAGGCGAGGCGCTGGGGAGAAT
AAATGCATATGCTCATCAGCATGCTCTATCAGCACACACTATGGTGCCCA
TGGCACACGCGGCAGACCGCGCAAGGAGGGCTTTGTGACTGTAGCATGGT
GACCTGATCGTGTTGCGGGGGCTCGGCTCCGCAGAGCTGTGCGGCTCTTT
TGCCTGAACACAGGAGATCGCAACTTGAAGCTGTGTGGTGTCAATTCACG
CCCCGCCTGAACTCAACTAGTTCAATGTTATCTCGCAGGTCCTTGCCACC
AGAGACCAGGTCGTCGGCCAGGTCAAAGTCACCGTTGGCAAGACCATCGG
CAACCACCGCATGGAGGCAGAAGGTGAGCTTTGGCTACGTGCGTACTTGC
ACCCCAACATACTAAGAAGCCCATCAATTATTGAGAGGTGAAGGACAAGG
ACTCCGGAGTGGTGTGTTGTACCAATGCTTTTGTAGTAGGTTTCAAAGCA
GGCACATATCAGAGGTCATCTTCAGCAAGCGCTGAGTGAGTGTGTTGGTC
ATTGTTGCGCGTGCCACGTGTACAGCAGCCTCGGAAAATCTTTCGAGCAG
CGCGCCATACACAGTCCTGACGGAGTAGTGGTGCCTCTCGCCTGAGCATG
TAGCGTTAGTATGCACATGCAAACCACATGGTATCATTGTGGATACCCAT
ATGACTTCTTTGTATTAGTTGGATCGTGGCTGCATTGACCATGGCATGTG
ACATTGCAGAAGTCTTCCTTGTTGCGGCAACATGAGGTTGGCGGTTCTGC
CACTGTTGCTGTTGCCAGCATCGCAGCATGACTCCAGCTTCCGAAGAACA
CGCCATCAAAATGAAGGCACGGCATGTGCCTCAAACTGCTTGTAACTGTA
AAGTGCTTACAGTGTTACCCTTGCGCTTTGTCCGCAGGCCACAAACAGCA
AGATCACGGCACTGCGGAGAAGCAGGCAGCCGCCGCCAAGCACACTGCGG
ATGGTACCAGCGATAGGCTGCTCTGCCAGGTGAGGCTGGGAGTTCATAGA
AGCCGAAGCGTCAGGGTCTGGGCGAAAGTTATCTCTGGGATTGAGGTCTG
TGCAGGCAACACCAGCGGAGGACCCTGCAGCCACCAGGCAGGGCAGAGGG
GGTAGGTTAGTATACTAGCATCGACAGTGCAACCCTTCCATTGTGTTCTA
GGGCTTGATGAAGCAGGATTCAAGTGAAGCAGCTTGCGGTTGCAGCCAGT
AGCGGTGACTCATTACGGCCACGTTTTATCGCAACAAAGCGGTGGTGATA
GCCGTTGGACCGGGGCGTAAGCAAGGCACCCTGTTTGCGAGGAGTCAGCT
GAGGTGAGAACTCCTACTTGAAGTATGACGTGAAGTTTTCCGTGGCTAAT
ACTTGGCAGCGGCGACTTGTTCTTACCAGACGCTGCGCGCAGTTGTGCCA
CATCGTTGCATGCATGAGGTTGGTGTACGCACTGCGCGCAGCATGCATTG
GACAGCCACTTGGTAAAGGCTCGGTGGCCTTGTCCAATGCATTGTCGTAT
GCCTGAGCCCAGAGTGCGCAGCATCCCCCGGACAGCTGTCGAACACGGCT
GTCTGCGCAGTCACTGCGTTCATTGTGTGCTTGATGCCAACATAGAAGTA
TGGGACACGACAGGACTGTACGTAATAAATTACTGCAGCTACGACTATGC
AATCACTGTGGTATCGCGTGGTTGATGCGAACATCTCAGATGACTGCACC
GTGATATTGCGTTAAAGGAGCGGAGCCGCATTCATGAGTGCTGACTTCCA
TTCACCTTTGCGATCCTTCCCGTGCCTTTGAGCAGAATGCCACTGGACCA
ATCTTGGGCAACGAGCGGTTGCACTCGGACGGTGAGGTCTACAAGGCCAA
AGGAAGGGTGAGCACTGCCACTTGAAGTACAAATGTTTCAAGTTCAAGTA
GTATTTTGGCAGTGGCACACTGCGCTGTAGGGCTGCCGTGTGTCTAGTTG
TCATAATTGGCAATTGCCAGGGCACTGATTTATATCGGGACCAAGTCACT
AGGTCTCCATTGCTGGCTGTCACCAGCAAGAAAGCGCAACAAACCAAACA
CACAGCCGTCAGGTCTCTATTGTCAACAGCAAAAGCGCTCGAACTAATGT
GCCGTACTCCGTGTGCTTTTAATCATGCGAGGGTGCTTGGGTTACTGACT
TGGCACAACGTGCAGCTACACAGGTTATTGTTATGCGTTGGATCATTCCA
TACCTATCTACATGCGAAAAGCTTTGACTATTGTCTGTGCGTCCACCATA
GTTGGTCCGGTAGGCGATCGCGGTGCTCACACATATTTGAAGCAGCAGGG
CGCCGAAAAGCTACTGCAGAATACAGTTCACGGCAGCTGCAAGAGTACGG
GCGCCGAAGGTGCCTAAAACGCGTGCAAGGCGGCTGGCTCGCAGAGAGAA
ACAGTCTGTTTCGCGGGGTGCGGCATTGACAGGACGTGAAGTTTAGCGCG
CAGAGAACAGGCAACAACGAGAAGTGGCAGCGGCAGGGTCACGACAACGA
GAGAGGCGGCAAGCGGCAGGGCGACGTGCGGGACGAGATTCGGCAACTTG
AAGTGGCGCTGTTGAAGTTGTTGGTGGCGCGGCGGCGGCGGCGTCTGGGT
CCGTCTGTCGCGGCGGTGCATGAAGAGGTGGCGGCGGCGGCAGCAGAACG
GGGGGGCGCAAGCAGGTGAACAATCTGAGGAGCGTCAGCTTTTCACAGGA
AAGACGTTCCTCAATTGTTCGCCGAATAACTGAATCAAAAGTGTTTTTGA
CTGATTGGTTTGAAGCCCTGTAAACCCCGTCAAGAATCAGTGAGGTTCAG
CTATATATTGCAAGTACACACCGTCACTGGCACTCGTTCAGTAGCTGTAG
AGCAGGCCACACAGCAGCTGCCAAAGACTTTCAACTTCAACACAAAGGAC
ACTTTAAGTCAGCTAGGCTCAATTATGTGATTCAGGTGCAACAATTTGCT
GCTTTGACGAGAGATACAACTAGATCAGCCACTGGCGCTTGACTGCGAGC
GTCCTCCAAAGGTCACTTCCTCCCCTAGCTTGTTTCAATTTCCCAGAGCA
GTAGATAGCGCGTCCTACCATCCCAACGTCACTTCTCGCCACACATCTGC
AGGGTTTTGCATGGCTTTATCCCATTGCCGCCGTCTCTTATCCGCCGTCT
CTTATTGATGACGCGGCCAAATTTATCAAAACAAAATACAATACAAAAGC
AGGTTTATCACATCATTGAGCGCAGTCGCTTCGCACAATGTCAGGTCACG
CAGCTCTTGTTACATCTTCTTCATCTCAAAGACAGCTACATACTGTACCT
GAGCTGAGCGTTGACACTCAATTAGCACAAATCTGTACAGCGCAATAGCA
AGCCTCGATCCGCCTGAGAGTTGCACTGGCATTTCCGATCAAGATGCGAT
TCATGCACGGACATCATTGTCGCCGAACTATTCGCGCGATGCGCCGCTGT
CAATACATAGTCTTCTCCCTAAGTCGCAGCTACTGCAAGTTGAAGTGCCT
ACTCAGCCACTGAAAAAACCCCTGAGAACCACACACAATAACCGCTGCTT
GCGTTCTACGTGATTGATTGCCCAGCAGTTTGCACTAGCGCCAGACACAA
ACATGCACGCCACCCCTTAGGCGACGATGCCGCAGCGAGCCTACTGAACG
CTAACCATGCACTCTTTTCCTCCGCGTCTGTTGTTGTACCTACCAACCCC
CCCCCCCCCCCCCCCCCCCAGGGCTCCTTCGCGCACTCCTTCACCTTCAA
CAACACGTGGTGCCACCAGCACGACCAAGCAGCGGTATGCGGCCCCCCGG
GCTCGCCCGACCGCGGTGGCCACCGCTGCTTCTACGCCGCCAAGGCCGGC
ACCTCGCGCTTCGCCGCGCAGTGCCCGCAGAACGCGCAGTATGACGACAA
CGTGTGCCTCAGCGACCAGGAGCGCGAGCTCTTCAGCACGAGCACGCCCG
GCGACTACCTGCACGGCATCTGCTACAAGGCGCGCTGGAGCGAGCGGCGC
ATGGGCGGCGGGCCGGAGTGCCCCGACTGCCAGCGGCACGCCGACCCCGC
CGCCTCCGCGACTGCGACTTCAACTTCAACTGCCAGTTCGTTGTACGCGT
CGCCGCCCAAGAAGCCGCGCACCAGCAGGACGTGAGCTTCAGCAGCGGCG
GCGGCGCTGCGCGAATTACGCCACTCGAGTATCTCTGTTCTTTCCGTCCT
GGCCCAGCCCAGGGACAGCAGTTTTTTTGTCTGTCCTGGCTCAGGGGCAT
CGATGCGTTTCGTGCGCAAACGTGTGACCGCGCCGCGCGCGGTGGCGCTC
CCGTATGCATAGGCCCAACACTTTCACGCCGAGATGAGAGGCGCATGATC
ATGCGGCACGTGACAGTCCCCCGTATTCATAGACCGGAATCAACACGACG
TGGTTGGTAATGGCGACTGCTCGCAACTTCAATTCACCGTTCCCACATCT
C

Coding sequence (CDS) from alignment at Contig_21:876664..881214+

>mRNA_7197 ID=mRNA_7197|Name=jgi.p|Trimin1|348246|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=810bp|location=Sequence derived from alignment at Contig_21:876664..881214+ (Tribonema minus UTEX_B_3156 )
ATGATCTCGTCAGGCCCCATCAAGGTCCTTGCCACCAGAGACCAGGTCGT
CGGCCAGGTCAAAGTCACCGTTGGCAAGACCATCGGCAACCACCGCATGG
AGGCAGAAGGCCACAAACAGCAAGATCACGGCACTGCGGAGAAGCAGGCA
GCCGCCGCCAAGCACACTGCGGATGGTACCAGCGATAGGCTGCTCTGCCA
GGACGTGAAGTTTAGCGCGCAGAGAACAGGCAACAACGAGAAGTGGCAGC
GGCAGGGTCACGACAACGAGAGAGGCGGCAAGCGGCAGGGCGACGTGCGG
GACGAGATTCGGCAACTTGAAGTGGCGCTGTTGAAGTTGTTGGTGGCGCG
GCGGCGGCGGCGTCTGGGTCCGTCTGTCGCGGCGGTGCATGAAGAGGGCT
CCTTCGCGCACTCCTTCACCTTCAACAACACGTGGTGCCACCAGCACGAC
CAAGCAGCGGTATGCGGCCCCCCGGGCTCGCCCGACCGCGGTGGCCACCG
CTGCTTCTACGCCGCCAAGGCCGGCACCTCGCGCTTCGCCGCGCAGTGCC
CGCAGAACGCGCAGTATGACGACAACGTGTGCCTCAGCGACCAGGAGCGC
GAGCTCTTCAGCACGAGCACGCCCGGCGACTACCTGCACGGCATCTGCTA
CAAGGCGCGCTGGAGCGAGCGGCGCATGGGCGGCGGGCCGGAGTGCCCCG
ACTGCCAGCGGCACGCCGACCCCGCCGCCTCCGCGACTGCGACTTCAACT
TCAACTGCCAGTTCGTTGTACGCGTCGCCGCCCAAGAAGCCGCGCACCAG
CAGGACGTGA