Trimin1|347887|estExt_Genemark1.C_Ctg_170015 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|347887
Unique Name	Trimin1\|347887\|estExt_Genemark1.C_Ctg_170015
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	521

Homology

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BLAST of jgi.p|Trimin1|347887 vs. uniprot
Match: A0A836CIK1_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIK1_9STRA)

HSP 1 Score: 914 bits (2361), Expect = 0.000e+0
Identity = 520/520 (100.00%), Postives = 520/520 (100.00%), Query Frame = 0

Query:    1 MERKEMQGVLKKACIWCVKEKRRCGGGHPCEQCVVRERGNKCAYEQRRKSGPKSRGGGTLLMVPVSAASKNSKPLAKKEDLEELRLKRASPLRGPPREVKPWFTSTGLIRQKALYKPDTSRLGTAAPEPSSGGRVLRSSTTRTLRRSDTGASVSTSTSNLSSQDSVCSACERQARAEVLGSGGDSGGAAGDAPRGSEEGDALAAKLAQSYALARVKHDQEALLEGDGERKSESSSAPTEVSEEEDKEDVGPPPMKRPRTADMGLGEEEEVAAEAVSSAVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQRECSSGGASALDEAALLREPLHDDVDLCIGTAQSARLTGGGTAANGSDGADATVPGPMSTAIEGLRITAPPRARFDSDIPSIGTPYSLGMGAPASDSGGPESFDLARCFSGNSIAGGNSLSGLGSGGGNGMSLSVEELPPASMTRQRSLDSAVDKLDDADREAALSQGDGLERGGLAPARDASAGFGGGNGHDHNAPVWSLFQRVK 520
            MERKEMQGVLKKACIWCVKEKRRCGGGHPCEQCVVRERGNKCAYEQRRKSGPKSRGGGTLLMVPVSAASKNSKPLAKKEDLEELRLKRASPLRGPPREVKPWFTSTGLIRQKALYKPDTSRLGTAAPEPSSGGRVLRSSTTRTLRRSDTGASVSTSTSNLSSQDSVCSACERQARAEVLGSGGDSGGAAGDAPRGSEEGDALAAKLAQSYALARVKHDQEALLEGDGERKSESSSAPTEVSEEEDKEDVGPPPMKRPRTADMGLGEEEEVAAEAVSSAVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQRECSSGGASALDEAALLREPLHDDVDLCIGTAQSARLTGGGTAANGSDGADATVPGPMSTAIEGLRITAPPRARFDSDIPSIGTPYSLGMGAPASDSGGPESFDLARCFSGNSIAGGNSLSGLGSGGGNGMSLSVEELPPASMTRQRSLDSAVDKLDDADREAALSQGDGLERGGLAPARDASAGFGGGNGHDHNAPVWSLFQRVK
Sbjct:    1 MERKEMQGVLKKACIWCVKEKRRCGGGHPCEQCVVRERGNKCAYEQRRKSGPKSRGGGTLLMVPVSAASKNSKPLAKKEDLEELRLKRASPLRGPPREVKPWFTSTGLIRQKALYKPDTSRLGTAAPEPSSGGRVLRSSTTRTLRRSDTGASVSTSTSNLSSQDSVCSACERQARAEVLGSGGDSGGAAGDAPRGSEEGDALAAKLAQSYALARVKHDQEALLEGDGERKSESSSAPTEVSEEEDKEDVGPPPMKRPRTADMGLGEEEEVAAEAVSSAVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQRECSSGGASALDEAALLREPLHDDVDLCIGTAQSARLTGGGTAANGSDGADATVPGPMSTAIEGLRITAPPRARFDSDIPSIGTPYSLGMGAPASDSGGPESFDLARCFSGNSIAGGNSLSGLGSGGGNGMSLSVEELPPASMTRQRSLDSAVDKLDDADREAALSQGDGLERGGLAPARDASAGFGGGNGHDHNAPVWSLFQRVK 520

[Close]

BLAST of jgi.p|Trimin1|347887 vs. uniprot
Match: A0A836CJ95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ95_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 5.220e-17
Identity = 37/47 (78.72%), Postives = 46/47 (97.87%), Query Frame = 0

Query:    9 VLKKACIWCVKEKRRCGGGHPCEQCVVRERGNKCAYEQRRKSGPKSR 55
            +LKKAC+WCVKEKRRCGGGHPCEQC++R+RG++C YEQRRKSGP++R
Sbjct:   31 LLKKACVWCVKEKRRCGGGHPCEQCLIRDRGDECGYEQRRKSGPRAR 77

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347887 vs. uniprot

BLAST of jgi.p|Trimin1|347887 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CIK1_9STRA	0.000e+0	100.00	Zn(2)-C6 fungal-type domain-containing protein n=1...	[more]
A0A836CJ95_9STRA	5.220e-17	78.72	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036864	Zn(2)-C6 fungal-type DNA-binding domain superfamily	GENE3D	4.10.240.10		coord: 6..63 e-value: 1.8E-6 score: 29.7
IPR036864	Zn(2)-C6 fungal-type DNA-binding domain superfamily	SUPERFAMILY	57701	Zn2/Cys6 DNA-binding domain	coord: 9..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 279..298
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 472..520
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..320
IPR001138	Zn(2)-C6 fungal-type DNA-binding domain	PROSITE	PS50048	ZN2_CY6_FUNGAL_2	coord: 13..44 score: 8.577

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_17	contig	Contig_17:81528..83642 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347887	mRNA_3323	Tribonema minus UTEX_B_3156	mRNA	Contig_17 81528..83642 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|347887|estExt_Genemark1.C_Ctg_170015 ID=Trimin1|347887|estExt_Genemark1.C_Ctg_170015|Name=jgi.p|Trimin1|347887|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=521bp
MERKEMQGVLKKACIWCVKEKRRCGGGHPCEQCVVRERGNKCAYEQRRKS
GPKSRGGGTLLMVPVSAASKNSKPLAKKEDLEELRLKRASPLRGPPREVK
PWFTSTGLIRQKALYKPDTSRLGTAAPEPSSGGRVLRSSTTRTLRRSDTG
ASVSTSTSNLSSQDSVCSACERQARAEVLGSGGDSGGAAGDAPRGSEEGD
ALAAKLAQSYALARVKHDQEALLEGDGERKSESSSAPTEVSEEEDKEDVG
PPPMKRPRTADMGLGEEEEVAAEAVSSAVRKWQEQQERPQQQHAPVTTVH
NALPPPLQPPSLMQRECSSGGASALDEAALLREPLHDDVDLCIGTAQSAR
LTGGGTAANGSDGADATVPGPMSTAIEGLRITAPPRARFDSDIPSIGTPY
SLGMGAPASDSGGPESFDLARCFSGNSIAGGNSLSGLGSGGGNGMSLSVE
ELPPASMTRQRSLDSAVDKLDDADREAALSQGDGLERGGLAPARDASAGF
GGGNGHDHNAPVWSLFQRVK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036864	Zn2-C6_fun-type_DNA-bd_sf
IPR001138	Zn2-C6_fun-type_DNA-bd