mRNA_3323 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|347887
Unique Name	mRNA_3323
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|347887 vs. uniprot
Match: A0A836CIK1_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIK1_9STRA)

HSP 1 Score: 914 bits (2361), Expect = 0.000e+0
Identity = 520/520 (100.00%), Postives = 520/520 (100.00%), Query Frame = 1

Query:    1 MERKEMQGVLKKACIWCVKEKRRCGGGHPCEQCVVRERGNKCAYEQRRKSGPKSRGGGTLLMVPVSAASKNSKPLAKKEDLEELRLKRASPLRGPPREVKPWFTSTGLIRQKALYKPDTSRLGTAAPEPSSGGRVLRSSTTRTLRRSDTGASVSTSTSNLSSQDSVCSACERQARAEVLGSGGDSGGAAGDAPRGSEEGDALAAKLAQSYALARVKHDQEALLEGDGERKSESSSAPTEVSEEEDKEDVGPPPMKRPRTADMGLGEEEEVAAEAVSSAVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQRECSSGGASALDEAALLREPLHDDVDLCIGTAQSARLTGGGTAANGSDGADATVPGPMSTAIEGLRITAPPRARFDSDIPSIGTPYSLGMGAPASDSGGPESFDLARCFSGNSIAGGNSLSGLGSGGGNGMSLSVEELPPASMTRQRSLDSAVDKLDDADREAALSQGDGLERGGLAPARDASAGFGGGNGHDHNAPVWSLFQRVK 1560
            MERKEMQGVLKKACIWCVKEKRRCGGGHPCEQCVVRERGNKCAYEQRRKSGPKSRGGGTLLMVPVSAASKNSKPLAKKEDLEELRLKRASPLRGPPREVKPWFTSTGLIRQKALYKPDTSRLGTAAPEPSSGGRVLRSSTTRTLRRSDTGASVSTSTSNLSSQDSVCSACERQARAEVLGSGGDSGGAAGDAPRGSEEGDALAAKLAQSYALARVKHDQEALLEGDGERKSESSSAPTEVSEEEDKEDVGPPPMKRPRTADMGLGEEEEVAAEAVSSAVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQRECSSGGASALDEAALLREPLHDDVDLCIGTAQSARLTGGGTAANGSDGADATVPGPMSTAIEGLRITAPPRARFDSDIPSIGTPYSLGMGAPASDSGGPESFDLARCFSGNSIAGGNSLSGLGSGGGNGMSLSVEELPPASMTRQRSLDSAVDKLDDADREAALSQGDGLERGGLAPARDASAGFGGGNGHDHNAPVWSLFQRVK
Sbjct:    1 MERKEMQGVLKKACIWCVKEKRRCGGGHPCEQCVVRERGNKCAYEQRRKSGPKSRGGGTLLMVPVSAASKNSKPLAKKEDLEELRLKRASPLRGPPREVKPWFTSTGLIRQKALYKPDTSRLGTAAPEPSSGGRVLRSSTTRTLRRSDTGASVSTSTSNLSSQDSVCSACERQARAEVLGSGGDSGGAAGDAPRGSEEGDALAAKLAQSYALARVKHDQEALLEGDGERKSESSSAPTEVSEEEDKEDVGPPPMKRPRTADMGLGEEEEVAAEAVSSAVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQRECSSGGASALDEAALLREPLHDDVDLCIGTAQSARLTGGGTAANGSDGADATVPGPMSTAIEGLRITAPPRARFDSDIPSIGTPYSLGMGAPASDSGGPESFDLARCFSGNSIAGGNSLSGLGSGGGNGMSLSVEELPPASMTRQRSLDSAVDKLDDADREAALSQGDGLERGGLAPARDASAGFGGGNGHDHNAPVWSLFQRVK 520

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BLAST of jgi.p|Trimin1|347887 vs. uniprot
Match: A0A836CJ95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ95_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 5.220e-17
Identity = 37/47 (78.72%), Postives = 46/47 (97.87%), Query Frame = 1

Query:   25 VLKKACIWCVKEKRRCGGGHPCEQCVVRERGNKCAYEQRRKSGPKSR 165
            +LKKAC+WCVKEKRRCGGGHPCEQC++R+RG++C YEQRRKSGP++R
Sbjct:   31 LLKKACVWCVKEKRRCGGGHPCEQCLIRDRGDECGYEQRRKSGPRAR 77

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BLAST of jgi.p|Trimin1|347887 vs. uniprot
Match: A0A835ZAT8_9STRA (Splicing factor, Prp19-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAT8_9STRA)

HSP 1 Score: 1016 bits (2626), Expect = 0.000e+0
Identity = 646/650 (99.38%), Postives = 646/650 (99.38%), Query Frame = 2

Query:  140 MEFTKRDLALLLPDQVGDAASLRFTADASADAAPAEMLKPRIDPTKKVVIYRAGQVPNFGANHQDEEGGTRRRRKGWDKGATQAAVAPSAGEGAGVGALLEGFGPLSVEEQDDXXXXXXXXRSKARXRARLVVEAEVIEGSASESDGELEGAYQKGAGKRRDADETPVEGDVAVGQADEQXXXXXXXXXXXXXXXXXXXXAASAGPDKAAEEAKARQRAEAAVLEEPGGAEEEEGEXXXXXGSDEWETDSESESEADXXXXXXXXXXXXXXXXXXXVALLKPVFVPREKRETLLQAKALEDAARARAHKDAQELERKKRETRQLVAEEIRRDQEKSVAVLDGGGSDGELPDDTDDPDSILQLEAWKXXXXXXXXXAGARDAAPHELEAWKVREMQRLTRDKEEREALARERAETERRRNLTEDERRREDRELGKGAGKEKSKWKFMQKYYHQCWCAASGAARSWRMRAADIACGDGVVVNAPAAAACAACRLLRRAATQRAGVFYMDEDSVKDRGDVRLRDNTGATGEDKFNMEAMPKVMQVPDLLLNFLRGHVXXXXXXXXXXXXXXXXVHNFGRSGQTKWTHLAAEDTTNLAEPFLMSDRTIRSKLESKMAGTGDVDAPFRRXXXXXXXXXXXXXXQMPLPPPHYHVG 2089
            MEFTKRDLALLLPDQVGDAASLRFTADASADAAPAEMLKPRIDPTKKVVIYRAGQVPNFGANHQDEEGGTRRRRKGWDKGATQAAVAPSAGEGAGVGALLEGFGPLSVEEQDDXXXXXXXXRSKARXRARLVVEAEVIEGSASESDGELEGAYQKGAGKRRDADETPVEGDVAVGQADEQXXXXXXXXXXXXXXXXXXXXAASAGPDKAAEEAKARQRAEAAVLEEPGGAEEEEGEXXXXXGSDEWETDSESESEADXXXXXXXXXXXXXXXXXXXVALLKPVFVPREKRETLLQAKALEDAARARAHKDAQELERKKRETRQLVAEEIRRDQEKSVAVLDGGGSDGELPDDTDDPDSILQLEAWKXXXXXXXXXAGARDAAPHELEAWKVREMQRLTRDKEEREALARERAETERRRNLTEDERRREDRELGKGAGKEKSKWKFMQKYYHQCWCAASGAARSWRMRAADIACGDGVVVNAPAAAACAACRLLRRAATQRAGVFYMDEDSVKDRGDVRLRDNTGATGEDKFNMEAMPKVMQVPDLLLNFLRGHVXXXXXXXXXXXXXXXXVHNFGRSGQTKWTHLAAEDTTNLAEPFLMSDRTIRSKLESKMAGTGDVDAPFRRXXXXXXXXXX    QMPLPPPHYHVG
Sbjct:    1 MEFTKRDLALLLPDQVGDAASLRFTADASADAAPAEMLKPRIDPTKKVVIYRAGQVPNFGANHQDEEGGTRRRRKGWDKGATQAAVAPSAGEGAGVGALLEGFGPLSVEEQDDXXXXXXXXRSKARXRARLVVEAEVIEGSASESDGELEGAYQKGAGKRRDADETPVEGDVAVGQADEQXXXXXXXXXXXXXXXXXXXXAASAGPDKAAEEAKARQRAEAAVLEEPGGAEEEEGEXXXXXGSDEWETDSESESEADXXXXXXXXXXXXXXXXXXXVALLKPVFVPREKRETLLQAKALEDAARARAHKDAQELERKKRETRQLVAEEIRRDQEKSVAVLDGGGSDGELPDDTDDPDSILQLEAWKXXXXXXXXXAGARDAAPHELEAWKVREMQRLTRDKEEREALARERAETERRRNLTEDERRREDRELGKGAGKEKSKWKFMQKYYHQCWCAASGAARSWRMRAADIACGDGVVVNAPAAAACAACRLLRRAATQRAGVFYMDEDSVKDRGDVRLRDNTGATGEDKFNMEAMPKVMQVPDLLLNFLRGHVXXXXXXXXXXXXXXXXVHNFGRSGQTKWTHLAAEDTTNLAEPFLMSDRTIRSKLESKMAGTGDVDAPFRRXXXXXXXXXXHDYQQMPLPPPHYHVG 650

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BLAST of jgi.p|Trimin1|347887 vs. uniprot
Match: A0A7S2CP46_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CP46_9STRA)

HSP 1 Score: 154 bits (388), Expect = 6.250e-39
Identity = 119/329 (36.17%), Postives = 160/329 (48.63%), Query Frame = 2

Query: 1025 AKALEDAARARAHKDAQELERKKRETRQLVAEEIRRDQEKSVAVLDGGGSDGELPDDTDDPDSILQLEAWKXXXXXXXXXAGARDAAPHELEAWKVREMQRLTRDKEEREALARERAETERRRNLTEDERRREDRELGKGAGKEKSKWKFMQKYYHQCWCAASGAARSWRMRAADIACGDGVVVNAPAAAACAACRLLRRAATQRAGVFYMDEDSVKDRGDVRLRDNTGATGEDKFNMEAMPKVMQVPDLLLNFLRGHVXXXXXXXXXXXXXXXXVHNFGRSGQTKWTHLAAEDTTNLAEPFLMSDRTIRSKLESKMAGTGDVDAPFRR 2011
            AKA ++  R RA   A +LE++K ETR +VAE+IRRD+E+    +DG  SD  +P DTDD D                         P   EAWKVRE+QR+ RD++ R    +E+AETERRR LT+++R  ED  LGK   ++K KWKFMQKYYH+                                                 G FYMDE  + D  DVR R+  GAT +DKF+ +A+PKVMQ                             V  FG SGQTK+THL  +DTT+   P+   ++ +R+  +SKMAG GD+D+  R+
Sbjct:    7 AKAAQEEERERAR--AAQLEKRKAETRNMVAEQIRRDEEQVENHVDGNDSDANMPSDTDDLDD------------------------PMAYEAWKVRELQRVKRDRDLRLVHEQEKAETERRRGLTDEQRAAEDAALGKNKVEDKGKWKFMQKYYHK-------------------------------------------------GAFYMDETEM-DAEDVRKREFDGATLDDKFDKQALPKVMQ-----------------------------VKKFGFSGQTKYTHLKDQDTTDFDNPWNQKNQ-LRANYDSKMAGVGDIDSAGRK 229

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BLAST of jgi.p|Trimin1|347887 vs. uniprot
Match: A0A7S2SCR4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCR4_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.170e-37
Identity = 121/352 (34.38%), Postives = 172/352 (48.86%), Query Frame = 2

Query:  974 LLKPVFVPREKRETLLQAKALE--DAARARAHKDAQELERKKRETRQLVAEEIRRDQEKSV----AVLDGGGSDGELPDDTDDPDSILQLEAWKXXXXXXXXXAGARDAAPHELEAWKVREMQRLTRDKEEREALARERAETERRRNLTEDERRREDRELGKGAGKEKSKWKFMQKYYHQCWCAASGAARSWRMRAADIACGDGVVVNAPAAAACAACRLLRRAATQRAGVFYMDEDSVKDRGDVRLRDNTGATGEDKFNMEAMPKVMQVPDLLLNFLRGHVXXXXXXXXXXXXXXXXVHNFGRSGQTKWTHLAAEDTTNLAEPFLMSDRTIRSKLESKMAGTGDVDAPFRR 2011
            LLKPVFVPR KR T+ + +  E  +A+R   H+ A  LE++K ETR +VAE++RR+ ++ +    ++  G  SD  +P DTDD D                         P    +W++RE+QR+ RD + R A   ++AETERRRNLT+ ER  ED  LGK A K+K KW+FMQKYYH+                                                 G FYMD++++ D+ DVR R    AT EDKF+ +A+PKV+Q                             V  FG +G+TK+THLA +DTT+   P+ M    +R K +SK++G GD+D   R+
Sbjct:   54 LLKPVFVPRTKRGTVAEREMQEKREASRQLIHEAA--LEQRKIETRNMVAEQVRREDDEGMLEPGSIGGGNDSDAGMPSDTDDADD------------------------PVVFASWRLREIQRVKRDVDARRAFDLDKAETERRRNLTDAERAAEDAALGKNAEKDKEKWRFMQKYYHK-------------------------------------------------GAFYMDDETM-DKNDVRKRSYGEATLEDKFDKQALPKVLQ-----------------------------VKKFGFAGRTKYTHLADQDTTDWNNPW-MQKSNLREKYDSKLSGVGDIDRAGRK 299

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BLAST of jgi.p|Trimin1|347887 vs. uniprot
Match: A0A7S2CMS0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMS0_9STRA)

HSP 1 Score: 146 bits (368), Expect = 3.860e-34
Identity = 127/383 (33.16%), Postives = 172/383 (44.91%), Query Frame = 2

Query:  866 SDEWET-DSESESEADXXXXXXXXXXXXXXXXXXXVALLKPVFVPREKRETLLQAKALEDAARARAHKDAQELERKKRETRQLVAEEIRRDQEKSVAVLDGGGSDGELPDDTDDPDSILQLEAWKXXXXXXXXXAGARDAAPHELEAWKVREMQRLTRDKEEREALARERAETERRRNLTEDERRREDRELGKGAGKEKSKWKFMQKYYHQCWCAASGAARSWRMRAADIACGDGVVVNAPAAAACAACRLLRRAATQRAGVFYMDEDSVKDRGDVRLRDNTGATGEDKFNMEAMPKVMQVPDLLLNFLRGHVXXXXXXXXXXXXXXXXVHNFGRSGQTKWTHLAAEDTTNLAEPFLMSDRTIRSKLESKMAGTGDVDAPFRR 2011
            S EWET  SESE E+                      L+KPVFV R KR T+L+A+        +    A +LE++K ETR +VAE+IRR+++     +    SD  +P DTDD D                         P   EAWKVRE+QRLTRD   +E + +E+ ETERRR LT+++R  ED  LGK   ++K+KWKF+QKYYH+                                                 G FYMD D   ++ DVR R     T EDKF+  A+P+VMQ                             V  FG +GQTK+THL  +DTT    P+ M +  +R   +SKM+G GD+D+  R+
Sbjct:  178 SSEWETGSSESEEESQ---------------------LMKPVFVSRNKRATILEAERKVKVEETKRKAAAVKLEQRKIETRNMVAEKIRREEQMVENQVGDNDSDDNMPSDTDDLDD------------------------PVAYEAWKVRELQRLTRDNAIKEKMKKEKEETERRRALTDEQRGAEDLALGKVKTEDKAKWKFLQKYYHK-------------------------------------------------GAFYMD-DEEHEKKDVRQRKYDQPTLEDKFDKAALPRVMQ-----------------------------VKKFGFAGQTKYTHLLDQDTTEWDSPW-MQNSALRQTTDSKMSGLGDIDSGGRK 435

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BLAST of jgi.p|Trimin1|347887 vs. uniprot
Match: D7FYL5_ECTSI (MFAP1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL5_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.800e-31
Identity = 99/280 (35.36%), Postives = 124/280 (44.29%), Query Frame = 2

Query: 1172 SDGELPDDTDDPDSILQLEAWKXXXXXXXXXAGARDAAPHELEAWKVREMQRLTRDKEEREALARERAETERRRNLTEDERRREDRELGKGAGKEKSKWKFMQKYYHQCWCAASGAARSWRMRAADIACGDGVVVNAPAAAACAACRLLRRAATQRAGVFYMDEDSVKDRGDVRLRDNTGATGEDKFNMEAMPKVMQVPDLLLNFLRGHVXXXXXXXXXXXXXXXXVHNFGRSGQTKWTHLAAEDTTNLAEPFLMSDRTIRSKLESKMAGTGDVDAPFRR 2011
            S+G+ PDD DD D  L  E WK                        VRE+ R+ ++KEERE+  +ER +T RRRN+T+DERR ED  LGK  GK+K   KFMQKYYH+                                                 G FYMD+DS+K   DVR R     T EDKF+   MPK MQ                             V NFGRSGQTKWTHLA EDTT     +      + +K++ KM+G G++DA F+R
Sbjct:   11 SEGDAPDDDDDLDEELAFEEWK------------------------VRELSRVRKEKEERESAIKEREDTLRRRNMTDDERRMEDMMLGKHVGKDKGTIKFMQKYYHK-------------------------------------------------GAFYMDDDSLKVEDDVRRRSYNEPTLEDKFDKTQMPKPMQ-----------------------------VKNFGRSGQTKWTHLANEDTTQWDSAWAQETH-VATKMQHKMSGVGNIDAAFKR 187

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BLAST of jgi.p|Trimin1|347887 vs. uniprot
Match: A0A8K1CUC0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUC0_PYTOL)

HSP 1 Score: 138 bits (347), Expect = 3.680e-31
Identity = 130/395 (32.91%), Postives = 173/395 (43.80%), Query Frame = 2

Query:  818 PGGAEEEEGEXXXXXGSDEWETDSESESEADXXXXXXXXXXXXXXXXXXXVALLKPVFVPREKRETLLQAKALEDAARARAHKDAQELERKKRETRQLVAEEIRRDQEKSVAVLDGGGSDGELPDDTD--DPDSILQLEAWKXXXXXXXXXAGARDAAPHELEAWKVREMQRLTRDKEEREALARERAETERRRNLTEDERRREDRELGKGAGKEKSKWKFMQKYYHQCWCAASGAARSWRMRAADIACGDGVVVNAPAAAACAACRLLRRAATQRAGVFYMDEDSVKDRGDVRLRDNTGATGEDKFNMEAMPKVMQVPDLLLNFLRGHVXXXXXXXXXXXXXXXXVHNFGRSGQTKWTHLAAEDTTNLAEPFLMSDRTIRSKLESKMAGTGDVD 1996
            P  A +EE E     GS EWETDS+  +E +                    AL+KPVFVP++ RET+ + + L+     R      + + KK ETR+LVAEE++R++E       G  +D E+PDDTD  DP+                           E   W++REM+             +E  ET RRRN+TE+        L K A KEKSKWKFMQKYYH+                                                 G FYMD+ SV+++ DVR RD +GAT ED FN E MP VMQ                             V NFG+SG+TK+THLAAEDT+     +  +D  IR K  S+++GT D+D
Sbjct:  194 PSMARKEETESSGESGS-EWETDSDESNEGE--------------------ALMKPVFVPKKARETIKRQEELDAEEEKRRXXXXXKAQAKKLETRKLVAEELQREKEGEQT---GDMTDTEMPDDTDGLDPEQ--------------------------EYRDWELREMRXXXXXXXXXXXXRKEAEETLRRRNMTEEXXXXXXXXLKKNAPKEKSKWKFMQKYYHK-------------------------------------------------GAFYMDDTSVREKEDVRKRDASGATLEDNFNKEMMPSVMQ-----------------------------VKNFGKSGRTKYTHLAAEDTSKKDSLWGRND-AIREKFRSRLSGTRDLD 459

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BLAST of jgi.p|Trimin1|347887 vs. uniprot
Match: A0A4D9DAP2_9STRA (MFAP1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAP2_9STRA)

HSP 1 Score: 132 bits (333), Expect = 4.670e-29
Identity = 123/369 (33.33%), Postives = 160/369 (43.36%), Query Frame = 2

Query:  971 ALLKPVFVPREKRETLLQAKALEDAARARAHKDAQELERKKRETRQLVAEEIRRDQEKSVA---VLDGGGSDGELPDDTDDPDSILQLEAWKXXXXXXXXXAGARDAAPHELEAWKVREMQRLTRDKEEREALARERAETERRRNLTEDERRREDRELGKG-----AGK-EKSKWKFMQKYYHQCWCAASGAARSWRMRAADIACGDGVVVNAPAAAACAACRLLRRAATQRAGVFYMDEDSVKDRGDVRLRDNTGATGEDKFNMEAMPKVMQVPDLLLNFLRGHVXXXXXXXXXXXXXXXXVHNFGRSGQTKWTHLAAEDTTNLAEPFLMS-------DRTI------RSKLESKMAGTGDVDAPFRR 2011
            AL +PVF+P+ KRE                       E ++RETR +VAEE+R++ E +V     ++G GSD   PDD+D P+                      DA   E E W++RE+ R+ R+ E R+A  +++AE  RRR +TE ER  EDR LG G      GK EK+KWKFMQKYYH+                                                 G FYMDE+SV    DVR R    ATGEDKFN  A+P VMQ                             V NFGR+GQTK+THL  +DTT   +    S       D+        ++K   K+AGTGD+D   RR
Sbjct:  252 ALARPVFIPKGKRELDRXXXXXXXXXXXXXXXXXXARESRRRETRLMVAEEVRKEAEGAVGSGGAMEGYGSDAGAPDDSDRPEE---------------------DAL--EFENWRLRELARMKREMEARQAREKDKAEVARRRGMTEAERDAEDRRLGVGMYAKQGGKGEKAKWKFMQKYYHK-------------------------------------------------GAFYMDEESVARPDDVRRRAADEATGEDKFNRAALPSVMQ-----------------------------VKNFGRAGQTKYTHLLDQDTTRAEKHKTESVWQQMDQDKRFGMVGDAKNKFVHKLAGTGDIDQAGRR 519

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BLAST of jgi.p|Trimin1|347887 vs. uniprot
Match: A0A024GTI8_9STRA (MFAP1 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GTI8_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.010e-27
Identity = 102/342 (29.82%), Postives = 155/342 (45.32%), Query Frame = 2

Query:  971 ALLKPVFVPREKRETLLQAKALEDAARARAHKDAQELERKKRETRQLVAEEIRRDQEKSVAVLDGGGSDGELPDDTDDPDSILQLEAWKXXXXXXXXXAGARDAAPHELEAWKVREMQRLTRDKEEREALARERAETERRRNLTEDERRREDRELGKGAGKEKSKWKFMQKYYHQCWCAASGAARSWRMRAADIACGDGVVVNAPAAAACAACRLLRRAATQRAGVFYMDEDSVKDRGDVRLRDNTGATGEDKFNMEAMPKVMQVPDLLLNFLRGHVXXXXXXXXXXXXXXXXVHNFGRSGQTKWTHLAAEDTTNLAEPFLMSDRTIRSKLESKMAGTGDVD 1996
            +L+KPVF+PR+ R+T     A++     +  K+A++L  +K+ET++LV  E++  Q +   + D                                           E +AW++RE++R+ RD+++     ++R ET+RRRNLTE+ER+ EDR+L K   KEK KWKF+QKYYH+                                                 G FY+D+DSV+   DVR RD +GAT EDK N E +P VMQ                             V NFGR+G+TK+THL  +DTT     +  +D  IR+K  +K+ G  +++
Sbjct:  216 SLMKPVFIPRDARKTHSLQLAIDQNYDQQQQKEAEKLALRKKETKKLVLSEVQLKQTEKTDLTDXXXXXXXXX-----------------------------XXXXEEYKAWEIRELKRIKRDRDQAVRQEQDRQETQRRRNLTEEERQAEDRKLKKNEPKEKKKWKFLQKYYHK-------------------------------------------------GAFYVDDDSVQKNEDVRKRDTSGATLEDKHNKEILPIVMQ-----------------------------VKNFGRAGRTKYTHLVDQDTTGRDSLWTKNDE-IRAKYSTKIGGVRNLE 449

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BLAST of jgi.p|Trimin1|347887 vs. uniprot
Match: A0A5D6XW28_9STRA (MFAP1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW28_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.260e-27
Identity = 88/240 (36.67%), Postives = 121/240 (50.42%), Query Frame = 2

Query: 1292 ELEAWKVREMQRLTRDKEEREALARERAETERRRNLTEDERRREDRELGKGAGKEKSKWKFMQKYYHQCWCAASGAARSWRMRAADIACGDGVVVNAPAAAACAACRLLRRAATQRAGVFYMDEDSVKDRGDVRLRDNTGATGEDKFNMEAMPKVMQVPDLLLNFLRGHVXXXXXXXXXXXXXXXXVHNFGRSGQTKWTHLAAEDTTNLAEPFLMSDRTIRSKLESKMAGTGDVDAPFRR 2011
            E   W++REM+R+ RD++ +E   +E  E  RRRN+TE+ER+ EDR+L K    EK+KWKFMQKY+H+                                                 GVFY+DE SVKD+ DVR RD +GAT EDKFN E +PKVMQ                             V NFGRSGQTK+THLA +DT++    +  +D +IR K ++K++G  D++   +R
Sbjct:  317 EYRDWELREMRRIKRDRDRKEQKRQEAEEILRRRNMTEEERQAEDRKLKKDVRTEKAKWKFMQKYHHK-------------------------------------------------GVFYVDETSVKDKDDVRRRDVSGATLEDKFNKEMLPKVMQ-----------------------------VKNFGRSGQTKYTHLADQDTSHRDSLWARND-SIREKFKNKLSGVRDIEGSLKR 477

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BLAST of jgi.p|Trimin1|347887 vs. uniprot
Match: W7TVS7_9STRA (Micro-fibrillar-associated 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVS7_9STRA)

HSP 1 Score: 123 bits (309), Expect = 8.670e-27
Identity = 120/369 (32.52%), Postives = 155/369 (42.01%), Query Frame = 2

Query:  971 ALLKPVFVPREKRETLLQAKALEDAARARAHKDAQELERKKRETRQLVAEEIRRDQEKSVA---VLDGGGSDGELPDDTDDPDSILQLEAWKXXXXXXXXXAGARDAAPHELEAWKVREMQRLTRDKEEREALARERAETERRRNLTEDERRREDRELGKGA-----GK-EKSKWKFMQKYYHQCWCAASGAARSWRMRAADIACGDGVVVNAPAAAACAACRLLRRAATQRAGVFYMDEDSVKDRGDVRLRDNTGATGEDKFNMEAMPKVMQVPDLLLNFLRGHVXXXXXXXXXXXXXXXXVHNFGRSGQTKWTHLAAEDTTNLAEP-----FLMSDRTIR--------SKLESKMAGTGDVDAPFRR 2011
            AL +PVF+P+ KRE                       E ++RETR +VAEE+R++ E +V           D   PDD+D P+                      DA   E E W++RE+ R+ R+ E R+A  +++AE  RRR +TE ER  EDR LG G      GK EK+KWKFMQKYYH+                                                 G FYMDE+SV    DVR R    ATGEDKFN  A+P VMQ                             V NFGR+GQTK+THL  +DTT   +      +   D+  R        +K   K+AGTGD+D   RR
Sbjct:  112 ALARPVFIPKGKRELDRXXXXXXXXXXXXXXXXXXARESRRRETRLMVAEEVRKESEGAVGSXXXXXXXXXDAGAPDDSDRPEE---------------------DAL--EFENWRLRELARMKREMEARQAREKDKAEVARRRGMTEAERDAEDRRLGVGVYAKQGGKGEKAKWKFMQKYYHK-------------------------------------------------GAFYMDEESVARPDDVRRRAADEATGEDKFNRAALPSVMQ-----------------------------VKNFGRAGQTKYTHLLDQDTTRAEKHKTGSVWQQMDQDKRFGMVGDAKNKFVHKLAGTGDIDQAGRR 379

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347887 vs. uniprot
BLAST of jgi.p|Trimin1|347887 vs. uniprot

BLAST of jgi.p|Trimin1|347887 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CIK1_9STRA	0.000e+0	100.00	Zn(2)-C6 fungal-type domain-containing protein n=1...	[more]
A0A836CJ95_9STRA	5.220e-17	78.72	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

BLAST of jgi.p|Trimin1|347887 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZAT8_9STRA	0.000e+0	99.38	Splicing factor, Prp19-binding domain-containing p...	[more]
A0A7S2CP46_9STRA	6.250e-39	36.17	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S2SCR4_9STRA	1.170e-37	34.38	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S2CMS0_9STRA	3.860e-34	33.16	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
D7FYL5_ECTSI	1.800e-31	35.36	MFAP1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A8K1CUC0_PYTOL	3.680e-31	32.91	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A4D9DAP2_9STRA	4.670e-29	33.33	MFAP1 domain-containing protein n=1 Tax=Nannochlor...	[more]
A0A024GTI8_9STRA	1.010e-27	29.82	MFAP1 domain-containing protein n=1 Tax=Albugo can...	[more]
A0A5D6XW28_9STRA	3.260e-27	36.67	MFAP1 domain-containing protein n=1 Tax=Pythium br...	[more]
W7TVS7_9STRA	8.670e-27	32.52	Micro-fibrillar-associated 1 n=1 Tax=Nannochlorops...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_17	contig	Contig_17:81528..83642 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|347887\|estExt_Genemark1.C_Ctg_170015
Hectar predicted targeting category	other localisation
TranscriptId	348209
Track	FilteredModels1
ProteinId	347887

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347887	gene_3323	Tribonema minus UTEX_B_3156	gene	Contig_17 81528..83642 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3323_1	exon_3323_1	Tribonema minus UTEX_B_3156	exon	Contig_17 81528..81568 +
exon_3323_2	exon_3323_2	Tribonema minus UTEX_B_3156	exon	Contig_17 82121..83642 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3323	CDS_3323	Tribonema minus UTEX_B_3156	CDS	Contig_17 81528..81568 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347887	Trimin1\|347887\|estExt_Genemark1.C_Ctg_170015	Tribonema minus UTEX_B_3156	polypeptide	Contig_17 81528..83642 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_17:81528..83642+
coding sequence from alignment at Contig_17:81528..83642+

spliced messenger RNA

>mRNA_3323 ID=mRNA_3323|Name=jgi.p|Trimin1|347887|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1563bp|location=Sequence derived from alignment at Contig_17:81528..83642+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGCAAGGAGATGCAAGGCGTGCTGAAAAAGGCATGCATCTGGTG
CGTGAAGGAGAAGCGGCGGTGCGGCGGCGGGCACCCCTGCGAGCAGTGCG
TCGTGCGCGAGCGCGGCAACAAATGCGCGTACGAGCAAAGACGGAAGTCA
GGACCCAAGTCCAGAGGAGGGGGCACCCTTCTCATGGTGCCCGTCTCGGC
CGCCAGCAAAAACAGCAAGCCCCTGGCAAAAAAGGAGGACCTCGAGGAGT
TGCGCTTGAAACGTGCGTCGCCGCTGCGCGGTCCCCCCCGTGAAGTTAAG
CCCTGGTTCACCTCCACGGGGCTCATCCGCCAGAAGGCGCTGTACAAGCC
CGACACGAGCCGCCTAGGCACAGCCGCGCCGGAGCCGTCATCCGGCGGGC
GTGTGCTGCGCTCCAGCACGACGCGCACGCTGCGGCGCAGCGACACGGGC
GCCAGCGTCAGCACCAGCACCAGCAACCTGTCGTCGCAGGACAGCGTGTG
CTCCGCGTGCGAGCGCCAGGCGCGCGCGGAGGTGCTCGGCAGCGGCGGCG
ACAGCGGCGGCGCGGCGGGCGACGCGCCGCGCGGCAGCGAAGAGGGCGAC
GCGCTCGCTGCGAAGCTCGCGCAGAGCTACGCGCTCGCGCGCGTGAAGCA
CGACCAGGAGGCTCTGCTGGAGGGCGATGGGGAGAGGAAGTCCGAGAGCA
GCAGTGCTCCGACGGAGGTGTCTGAGGAGGAGGACAAAGAGGACGTGGGG
CCGCCGCCCATGAAGCGCCCGCGGACGGCGGACATGGGCCTCGGCGAGGA
GGAGGAGGTGGCGGCGGAGGCGGTGTCGTCGGCGGTGCGCAAGTGGCAGG
AGCAGCAGGAGCGGCCGCAGCAGCAGCACGCGCCGGTGACGACGGTGCAC
AATGCGCTGCCGCCGCCGCTGCAGCCGCCGTCGCTCATGCAGCGCGAGTG
CAGCAGCGGCGGCGCCAGCGCGCTCGACGAGGCGGCGCTGCTGCGCGAGC
CGCTGCACGACGACGTTGACCTCTGCATCGGCACTGCGCAGAGCGCTCGG
CTTACCGGCGGCGGCACTGCTGCCAACGGCAGCGATGGCGCGGACGCCAC
TGTGCCGGGCCCCATGTCGACGGCGATCGAGGGCCTGCGCATCACAGCAC
CGCCGCGCGCGCGCTTCGACAGCGACATCCCCTCCATCGGCACGCCGTAC
AGCCTGGGCATGGGCGCGCCGGCATCGGACAGCGGCGGCCCGGAGTCGTT
CGACCTCGCGCGCTGCTTCTCGGGCAACTCCATCGCGGGCGGCAACTCGC
TGAGCGGCCTCGGCAGCGGCGGCGGCAACGGCATGTCGCTGTCGGTGGAG
GAGCTGCCACCTGCGTCTATGACGCGCCAGCGCAGCCTCGATTCTGCTGT
CGACAAGCTGGACGATGCGGACCGCGAGGCAGCGCTCAGCCAGGGAGACG
GGTTGGAGCGCGGGGGGCTCGCGCCGGCGCGCGACGCCTCTGCTGGCTTT
GGCGGCGGTAATGGACACGACCACAACGCGCCGGTCTGGTCCTTGTTCCA
GCGCGTCAAATAG

protein sequence of jgi.p|Trimin1|347887

>Trimin1|347887|estExt_Genemark1.C_Ctg_170015 ID=Trimin1|347887|estExt_Genemark1.C_Ctg_170015|Name=jgi.p|Trimin1|347887|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=521bp
MERKEMQGVLKKACIWCVKEKRRCGGGHPCEQCVVRERGNKCAYEQRRKS
GPKSRGGGTLLMVPVSAASKNSKPLAKKEDLEELRLKRASPLRGPPREVK
PWFTSTGLIRQKALYKPDTSRLGTAAPEPSSGGRVLRSSTTRTLRRSDTG
ASVSTSTSNLSSQDSVCSACERQARAEVLGSGGDSGGAAGDAPRGSEEGD
ALAAKLAQSYALARVKHDQEALLEGDGERKSESSSAPTEVSEEEDKEDVG
PPPMKRPRTADMGLGEEEEVAAEAVSSAVRKWQEQQERPQQQHAPVTTVH
NALPPPLQPPSLMQRECSSGGASALDEAALLREPLHDDVDLCIGTAQSAR
LTGGGTAANGSDGADATVPGPMSTAIEGLRITAPPRARFDSDIPSIGTPY
SLGMGAPASDSGGPESFDLARCFSGNSIAGGNSLSGLGSGGGNGMSLSVE
ELPPASMTRQRSLDSAVDKLDDADREAALSQGDGLERGGLAPARDASAGF
GGGNGHDHNAPVWSLFQRVK*

mRNA from alignment at Contig_17:81528..83642+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3323 ID=mRNA_3323|Name=jgi.p|Trimin1|347887|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2115bp|location=Sequence derived from alignment at Contig_17:81528..83642+ (Tribonema minus UTEX_B_3156 )
ATGGAACGCAAGGAGATGCAAGGCGTGCTGAAAAAGGCATGGTAAGCTGC
CGGCTCGGCATCGGAAAAAGAACACAGCAAGTTGAACCCCGAGCTTTGCA
TGCTGGCGCAGCGGGTCACTGGCGGCGCTGTCGTAGGTCCTGCCGTTGCT
TGTCACCGTACACCTTCAATATAGGGATGGTGCAGAAGTTGGGGCACTTC
AGATTGGCATCAAAGTGTTCGAATCATTTTGTACTGGCGTCTCTAACATG
ATGAGTCCTTCTGATGACCTGATGACCACATGCCCATCAACAGGTCGACC
TTACTTAGCTCTATACTATGCATCTTCTTGTGGGCATTGCAAGCACTTTG
TGTTCTGCACGTGTTGACGTCGGCGTTTGGTAACGAATCCTTGCAAGTGT
GTACGTCGAGTGACCAAGCAGGTGTAACAGCATTCTGCAGACCATCTTAT
CTGACTCATGCATCATAATCTCCCACTGAAGGGTGGTGGCAGACACGGGA
TGCAAGGCACCTTGTACCATTTCCCAACATGCTGTCAGTTTCATCGCGTT
CTCATGCACCTGTGTTCCATCTTCCACTCCCCTGTGAGCGCAGCATCTGG
TGCGTGAAGGAGAAGCGGCGGTGCGGCGGCGGGCACCCCTGCGAGCAGTG
CGTCGTGCGCGAGCGCGGCAACAAATGCGCGTACGAGCAAAGACGGAAGT
CAGGACCCAAGTCCAGAGGAGGGGGCACCCTTCTCATGGTGCCCGTCTCG
GCCGCCAGCAAAAACAGCAAGCCCCTGGCAAAAAAGGAGGACCTCGAGGA
GTTGCGCTTGAAACGTGCGTCGCCGCTGCGCGGTCCCCCCCGTGAAGTTA
AGCCCTGGTTCACCTCCACGGGGCTCATCCGCCAGAAGGCGCTGTACAAG
CCCGACACGAGCCGCCTAGGCACAGCCGCGCCGGAGCCGTCATCCGGCGG
GCGTGTGCTGCGCTCCAGCACGACGCGCACGCTGCGGCGCAGCGACACGG
GCGCCAGCGTCAGCACCAGCACCAGCAACCTGTCGTCGCAGGACAGCGTG
TGCTCCGCGTGCGAGCGCCAGGCGCGCGCGGAGGTGCTCGGCAGCGGCGG
CGACAGCGGCGGCGCGGCGGGCGACGCGCCGCGCGGCAGCGAAGAGGGCG
ACGCGCTCGCTGCGAAGCTCGCGCAGAGCTACGCGCTCGCGCGCGTGAAG
CACGACCAGGAGGCTCTGCTGGAGGGCGATGGGGAGAGGAAGTCCGAGAG
CAGCAGTGCTCCGACGGAGGTGTCTGAGGAGGAGGACAAAGAGGACGTGG
GGCCGCCGCCCATGAAGCGCCCGCGGACGGCGGACATGGGCCTCGGCGAG
GAGGAGGAGGTGGCGGCGGAGGCGGTGTCGTCGGCGGTGCGCAAGTGGCA
GGAGCAGCAGGAGCGGCCGCAGCAGCAGCACGCGCCGGTGACGACGGTGC
ACAATGCGCTGCCGCCGCCGCTGCAGCCGCCGTCGCTCATGCAGCGCGAG
TGCAGCAGCGGCGGCGCCAGCGCGCTCGACGAGGCGGCGCTGCTGCGCGA
GCCGCTGCACGACGACGTTGACCTCTGCATCGGCACTGCGCAGAGCGCTC
GGCTTACCGGCGGCGGCACTGCTGCCAACGGCAGCGATGGCGCGGACGCC
ACTGTGCCGGGCCCCATGTCGACGGCGATCGAGGGCCTGCGCATCACAGC
ACCGCCGCGCGCGCGCTTCGACAGCGACATCCCCTCCATCGGCACGCCGT
ACAGCCTGGGCATGGGCGCGCCGGCATCGGACAGCGGCGGCCCGGAGTCG
TTCGACCTCGCGCGCTGCTTCTCGGGCAACTCCATCGCGGGCGGCAACTC
GCTGAGCGGCCTCGGCAGCGGCGGCGGCAACGGCATGTCGCTGTCGGTGG
AGGAGCTGCCACCTGCGTCTATGACGCGCCAGCGCAGCCTCGATTCTGCT
GTCGACAAGCTGGACGATGCGGACCGCGAGGCAGCGCTCAGCCAGGGAGA
CGGGTTGGAGCGCGGGGGGCTCGCGCCGGCGCGCGACGCCTCTGCTGGCT
TTGGCGGCGGTAATGGACACGACCACAACGCGCCGGTCTGGTCCTTGTTC
CAGCGCGTCAAATAG

Coding sequence (CDS) from alignment at Contig_17:81528..83642+

>mRNA_3323 ID=mRNA_3323|Name=jgi.p|Trimin1|347887|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1563bp|location=Sequence derived from alignment at Contig_17:81528..83642+ (Tribonema minus UTEX_B_3156 )
ATGGAACGCAAGGAGATGCAAGGCGTGCTGAAAAAGGCATGCATCTGGTG
CGTGAAGGAGAAGCGGCGGTGCGGCGGCGGGCACCCCTGCGAGCAGTGCG
TCGTGCGCGAGCGCGGCAACAAATGCGCGTACGAGCAAAGACGGAAGTCA
GGACCCAAGTCCAGAGGAGGGGGCACCCTTCTCATGGTGCCCGTCTCGGC
CGCCAGCAAAAACAGCAAGCCCCTGGCAAAAAAGGAGGACCTCGAGGAGT
TGCGCTTGAAACGTGCGTCGCCGCTGCGCGGTCCCCCCCGTGAAGTTAAG
CCCTGGTTCACCTCCACGGGGCTCATCCGCCAGAAGGCGCTGTACAAGCC
CGACACGAGCCGCCTAGGCACAGCCGCGCCGGAGCCGTCATCCGGCGGGC
GTGTGCTGCGCTCCAGCACGACGCGCACGCTGCGGCGCAGCGACACGGGC
GCCAGCGTCAGCACCAGCACCAGCAACCTGTCGTCGCAGGACAGCGTGTG
CTCCGCGTGCGAGCGCCAGGCGCGCGCGGAGGTGCTCGGCAGCGGCGGCG
ACAGCGGCGGCGCGGCGGGCGACGCGCCGCGCGGCAGCGAAGAGGGCGAC
GCGCTCGCTGCGAAGCTCGCGCAGAGCTACGCGCTCGCGCGCGTGAAGCA
CGACCAGGAGGCTCTGCTGGAGGGCGATGGGGAGAGGAAGTCCGAGAGCA
GCAGTGCTCCGACGGAGGTGTCTGAGGAGGAGGACAAAGAGGACGTGGGG
CCGCCGCCCATGAAGCGCCCGCGGACGGCGGACATGGGCCTCGGCGAGGA
GGAGGAGGTGGCGGCGGAGGCGGTGTCGTCGGCGGTGCGCAAGTGGCAGG
AGCAGCAGGAGCGGCCGCAGCAGCAGCACGCGCCGGTGACGACGGTGCAC
AATGCGCTGCCGCCGCCGCTGCAGCCGCCGTCGCTCATGCAGCGCGAGTG
CAGCAGCGGCGGCGCCAGCGCGCTCGACGAGGCGGCGCTGCTGCGCGAGC
CGCTGCACGACGACGTTGACCTCTGCATCGGCACTGCGCAGAGCGCTCGG
CTTACCGGCGGCGGCACTGCTGCCAACGGCAGCGATGGCGCGGACGCCAC
TGTGCCGGGCCCCATGTCGACGGCGATCGAGGGCCTGCGCATCACAGCAC
CGCCGCGCGCGCGCTTCGACAGCGACATCCCCTCCATCGGCACGCCGTAC
AGCCTGGGCATGGGCGCGCCGGCATCGGACAGCGGCGGCCCGGAGTCGTT
CGACCTCGCGCGCTGCTTCTCGGGCAACTCCATCGCGGGCGGCAACTCGC
TGAGCGGCCTCGGCAGCGGCGGCGGCAACGGCATGTCGCTGTCGGTGGAG
GAGCTGCCACCTGCGTCTATGACGCGCCAGCGCAGCCTCGATTCTGCTGT
CGACAAGCTGGACGATGCGGACCGCGAGGCAGCGCTCAGCCAGGGAGACG
GGTTGGAGCGCGGGGGGCTCGCGCCGGCGCGCGACGCCTCTGCTGGCTTT
GGCGGCGGTAATGGACACGACCACAACGCGCCGGTCTGGTCCTTGTTCCA
GCGCGTCAAATAG