Trimin1|347796|estExt_Genemark1.C_Ctg_160034 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|347796
Unique NameTrimin1|347796|estExt_Genemark1.C_Ctg_160034
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length200
Homology
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: A0A835Z9N1_9STRA (60S ribosomal protein L13a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N1_9STRA)

HSP 1 Score: 382 bits (980), Expect = 8.580e-134
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 MVLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYGH 199
            MVLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYGH
Sbjct:    1 MVLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYGH 199          
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: D7G6W9_ECTSI (60S ribosomal protein L13a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W9_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 2.940e-95
Identity = 142/197 (72.08%), Postives = 169/197 (85.79%), Query Frame = 0
Query:    2 VLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYG 198
            + E PV VDGRGHLLGRLAS+VAK+LL GQKV+VVR EQI ISGSLVRNKVKY Q++KKR NTNP RGP+HFRSPARIFWRT+RGM+P KT RG+ A+ARL  FEGIPAP+DK+KRMVVP AL+V+R+APGR+ CVLGRLS EVGW H +L++RLEA+RK++SEA+Y  KKA  QL+ KA A A+L+AV PVLE YG
Sbjct:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYG 197          
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: A0A5J4Z3W8_PORPP (60S ribosomal protein L13a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3W8_PORPP)

HSP 1 Score: 267 bits (683), Expect = 1.460e-88
Identity = 135/196 (68.88%), Postives = 160/196 (81.63%), Query Frame = 0
Query:    4 EKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYGH 199
            E  VVVD R HLLGRLASIVAK+LL GQKV+V R E I +SG  +R K KY  F +KRMNTNP+RGPFHFR+P+RIFWRT+RGM+PHKT RGQ A+ RLK FEGIP P+DK KRMVVP AL+V+RLAP RKHCVLGRLS EVGW++ D++ RLE KRKV S A+YQ+KKA  +L+ KA  +ADLS VTPVLE++GH
Sbjct:    3 ESVVVVDARAHLLGRLASIVAKELLCGQKVVVTRCEAIEMSGRFIRKKNKYLMFLRKRMNTNPSRGPFHFRAPSRIFWRTVRGMLPHKTERGQEALGRLKVFEGIPPPYDKMKRMVVPDALRVVRLAPRRKHCVLGRLSHEVGWKYQDVLARLETKRKVHSAAYYQRKKALDKLKRKATESADLSKVTPVLEAFGH 198          
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: A0A6S8ZJI7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZJI7_9STRA)

HSP 1 Score: 267 bits (682), Expect = 2.220e-88
Identity = 135/200 (67.50%), Postives = 165/200 (82.50%), Query Frame = 0
Query:    2 VLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAE--AAADLSAVTPVLESYGH 199
            +LE  ++VDGR HLLGRLASIV+K+LLSGQKV++VR +++ +SGSL RNKVKYAQFRKKRMNTNP RGPFHF+SPAR+ WRTIRGM  HKT RGQ A+ARL  F+GIP P+DK+KR V+PAAL+V+RL PGR H VLG L+  VGW+H DL++RLE KRKV++EAFYQKKKA  QLR KAE  AA +L+ V  VL + G+
Sbjct:    1 MLENTIIVDGRDHLLGRLASIVSKELLSGQKVVIVRCDEVCVSGSLTRNKVKYAQFRKKRMNTNPGRGPFHFKSPARMVWRTIRGMCHHKTARGQEALARLATFDGIPHPYDKKKRQVIPAALRVMRLKPGRDHTVLGELADSVGWKHHDLLKRLEEKRKVKAEAFYQKKKARTQLREKAEKAAAGELAKVNEVLAAAGY 200          
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: A0A7S4KBN4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KBN4_9STRA)

HSP 1 Score: 264 bits (674), Expect = 8.210e-87
Identity = 131/201 (65.17%), Postives = 169/201 (84.08%), Query Frame = 0
Query:    1 MVLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAA--DLSAVTPVLESYGH 199
            ++LEK V++DGR HLLGRLAS+VAK+LL+GQKV++VR +Q+V+SGS+VRN+VKY  FR+KRMNTNP+RGPFHF+SP R+ WRTIRGMIPHKT RG  A++RL  FEGIP P+DK+KR VVPAAL++LRL PGR + V+G L+  VGW+H DL++ LE KRKV+++AFYQKKKA ++L+ KAEAA   D+SA   VLES G+
Sbjct:   24 IMLEKEVIIDGRDHLLGRLASVVAKELLAGQKVVIVRCDQMVVSGSMVRNRVKYQYFRQKRMNTNPSRGPFHFKSPGRMVWRTIRGMIPHKTARGAEALSRLSTFEGIPHPYDKKKRQVVPAALRILRLKPGRDYTVMGDLAHSVGWKHRDLLKTLEEKRKVKADAFYQKKKARSELKAKAEAAVAGDVSAQNKVLESSGY 224          
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: A0A7S2DZL3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DZL3_9STRA)

HSP 1 Score: 261 bits (668), Expect = 2.990e-86
Identity = 133/200 (66.50%), Postives = 165/200 (82.50%), Query Frame = 0
Query:    2 VLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAE--AAADLSAVTPVLESYGH 199
            +LE  ++VDGR HLLGRLAS+VAK+LLSGQKV++VR +Q+ ISGSLVRNKVKYAQFRKKRMNTNP++GP+HF+SPA++ WRTIRGM   KT RGQ A+ARL  FEGIP P+DK+KR V+PAAL+V+RL P R + VLG L+  VGW+H DL++RLE KRKVR+ AFY+KKKA  QLR KAE  AA +L+ V  VLE+ G+
Sbjct:    1 MLENTIIVDGRDHLLGRLASVVAKELLSGQKVVIVRCDQVCISGSLVRNKVKYAQFRKKRMNTNPSKGPYHFKSPAKMVWRTIRGMCHQKTARGQEALARLSTFEGIPHPYDKKKRQVIPAALRVMRLKPSRNYTVLGELANAVGWKHQDLLKRLEDKRKVRAAAFYEKKKAKTQLREKAEKAAAGELAKVNEVLEASGY 200          
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: A0A7S0C8J6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C8J6_9STRA)

HSP 1 Score: 260 bits (664), Expect = 1.220e-85
Identity = 129/200 (64.50%), Postives = 165/200 (82.50%), Query Frame = 0
Query:    2 VLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEA--AADLSAVTPVLESYGH 199
            +LEKP+VVDGR HLLGRL S+VAK+LL+GQK+++VR +++ +SGSLVRNKVKYAQFR+KRMNTNP +GP+HF+SPAR+ WRT+RGM+ HK+ RG  A+ARL  FEGIPAP+DK KR V+PAAL++LRL   R+H VLG L+ E+GW+H DL+ RLEAKRKV SEAFYQKKKA ++++ KA A  A +L  V  VLE  G+
Sbjct:    1 MLEKPIVVDGRDHLLGRLCSVVAKELLAGQKIVIVRCDEVCVSGSLVRNKVKYAQFRRKRMNTNPGKGPYHFKSPARMVWRTLRGMVNHKSARGTEALARLSTFEGIPAPYDKIKRQVIPAALRILRLKTTRRHTVLGDLAHEIGWKHKDLMTRLEAKRKVESEAFYQKKKAKSEIQQKALASCAGELKEVNKVLEESGY 200          
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: A0A7R9Z0L8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z0L8_9STRA)

HSP 1 Score: 261 bits (667), Expect = 1.790e-85
Identity = 127/184 (69.02%), Postives = 160/184 (86.96%), Query Frame = 0
Query:    1 MVLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAA 184
            ++LEK V++DGR HLLGRLAS+VAK+LL+GQKV++VR +++V+SGSLVRN+VKYAQFRKKRMNTNP+RGPFHF+SP R+ WRTIRGM+PHKT RG  A++RL  FEGIP P+DK+KR VVPAAL+VLRL PGR + V+G L+  VGW+H DL++ LE KRKV++ AFYQKKKA A+L+ KAEAA
Sbjct:   49 VMLEKEVIIDGRDHLLGRLASVVAKELLAGQKVVIVRCDEMVVSGSLVRNRVKYAQFRKKRMNTNPSRGPFHFKSPGRMVWRTIRGMLPHKTARGAEALSRLSTFEGIPHPYDKKKRQVVPAALRVLRLKPGRDYTVMGELAHSVGWKHRDLLKTLEEKRKVKAAAFYQKKKARAELKAKAEAA 232          
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: A0A7S1TDT8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDT8_9RHOD)

HSP 1 Score: 258 bits (660), Expect = 4.610e-85
Identity = 129/194 (66.49%), Postives = 161/194 (82.99%), Query Frame = 0
Query:    6 PVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYGH 199
            PVVVDGRGHLLGRLAS VAK+LL+GQ+V+VVR E I  SG  +RNK KY  F +KRMNTNP RGP HFRSP+++FWRT+RGM+PHKT RG  A+ARLK FEGIPAP+DK KRMVVP AL+VLRL P RK+C LGR+++EVGW++ D+V+RLEAKRKV SEA+Y+KKKA  +LRV+A+A A +  +   L++YG+
Sbjct:    5 PVVVDGRGHLLGRLASTVAKELLNGQQVVVVRCEDIDQSGKFIRNKNKYLIFLRKRMNTNPTRGPIHFRSPSKMFWRTVRGMLPHKTQRGADALARLKVFEGIPAPYDKTKRMVVPNALRVLRLRPDRKYCRLGRIASEVGWKYADVVDRLEAKRKVSSEAYYEKKKAEGKLRVQAKANAAIQEMETKLQNYGY 198          
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: F0Y3B4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3B4_AURAN)

HSP 1 Score: 258 bits (658), Expect = 9.610e-85
Identity = 128/199 (64.32%), Postives = 157/199 (78.89%), Query Frame = 0
Query:    1 MVLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYGH 199
            MV +  V+VDGR H+LGRLASI+AK+LL GQKV+VVR EQ+ +SGSLVRNKVK+  F KKR NTNP RGP H+RSPAR+ WRT+RGM+PHKTHRGQ A+ARL+ FEG+P P+DK K+MVVP ALKVLRL PGR+  VL RL++E GW+H  L+ ++E KR  RS  FY  KK+   L+ KA AAADLS V  VLE++GH
Sbjct:    1 MVFQDSVLVDGRTHMLGRLASIIAKELLCGQKVVVVRCEQLCVSGSLVRNKVKFTAFLKKRTNTNPKRGPIHYRSPARMLWRTVRGMLPHKTHRGQQALARLQCFEGVPPPYDKMKKMVVPEALKVLRLKPGRRFTVLARLASEFGWKHEALIAKMEEKRVARSAEFYAAKKSATALKAKATAAADLSKVADVLEAFGH 199          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9N1_9STRA8.580e-134100.0060S ribosomal protein L13a n=1 Tax=Tribonema minus... [more]
D7G6W9_ECTSI2.940e-9572.0860S ribosomal protein L13a n=2 Tax=Ectocarpus TaxI... [more]
A0A5J4Z3W8_PORPP1.460e-8868.8860S ribosomal protein L13a n=1 Tax=Porphyridium pu... [more]
A0A6S8ZJI7_9STRA2.220e-8867.50Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4KBN4_9STRA8.210e-8765.17Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2DZL3_9STRA2.990e-8666.50Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S0C8J6_9STRA1.220e-8564.50Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7R9Z0L8_9STRA1.790e-8569.02Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1TDT8_9RHOD4.610e-8566.49Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
F0Y3B4_AURAN9.610e-8564.32Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005755Ribosomal protein L13, eukaryotic/archaealTIGRFAMTIGR01077TIGR01077coord: 7..148
e-value: 4.4E-56
score: 187.1
IPR005755Ribosomal protein L13, eukaryotic/archaealPANTHERPTHR11545:SF360S RIBOSOMAL PROTEIN L13A-RELATEDcoord: 2..186
IPR036899Ribosomal protein L13 superfamilyGENE3D3.90.1180.10Ribosomal protein L13coord: 2..149
e-value: 1.6E-58
score: 198.8
IPR036899Ribosomal protein L13 superfamilySUPERFAMILY52161Ribosomal protein L13coord: 7..149
NoneNo IPR availableGENE3D6.10.250.3250coord: 150..199
e-value: 4.1E-13
score: 51.4
IPR005822Ribosomal protein L13PFAMPF00572Ribosomal_L13coord: 5..111
e-value: 2.1E-26
score: 92.4
IPR005822Ribosomal protein L13PANTHERPTHR11545RIBOSOMAL PROTEIN L13coord: 2..186
IPR005822Ribosomal protein L13HAMAPMF_01366Ribosomal_L13coord: 6..130
score: 19.221266
IPR005822Ribosomal protein L13CDDcd00392Ribosomal_L13coord: 7..108
e-value: 1.6486E-41
score: 134.169
IPR023563Ribosomal protein L13, conserved sitePROSITEPS00783RIBOSOMAL_L13coord: 84..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_16contigContig_16:256891..259752 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347796mRNA_2945Tribonema minus UTEX_B_3156 mRNAContig_16 256810..259923 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|347796|estExt_Genemark1.C_Ctg_160034 ID=Trimin1|347796|estExt_Genemark1.C_Ctg_160034|Name=jgi.p|Trimin1|347796|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=200bp
MVLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRN
KVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMA
RLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHG
DLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYGH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005755Ribosomal_L13_euk/arc
IPR036899Ribosomal_L13_sf
IPR005822Ribosomal_L13
IPR023563Ribosomal_L13_CS