mRNA_2945 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347796
Unique NamemRNA_2945
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: A0A835Z9N1_9STRA (60S ribosomal protein L13a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N1_9STRA)

HSP 1 Score: 382 bits (980), Expect = 3.800e-133
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 3 
Query:   33 MVLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYGH 629
            MVLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYGH
Sbjct:    1 MVLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYGH 199
[Close]
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: D7G6W9_ECTSI (60S ribosomal protein L13a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W9_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 8.640e-95
Identity = 142/197 (72.08%), Postives = 169/197 (85.79%), Query Frame = 3 
Query:   36 VLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYG 626
            + E PV VDGRGHLLGRLAS+VAK+LL GQKV+VVR EQI ISGSLVRNKVKY Q++KKR NTNP RGP+HFRSPARIFWRT+RGM+P KT RG+ A+ARL  FEGIPAP+DK+KRMVVP AL+V+R+APGR+ CVLGRLS EVGW H +L++RLEA+RK++SEA+Y  KKA  QL+ KA A A+L+AV PVLE YG
Sbjct:    1 MFEAPVTVDGRGHLLGRLASVVAKELLGGQKVVVVRCEQITISGSLVRNKVKYMQYKKKRHNTNPKRGPYHFRSPARIFWRTVRGMLPRKTARGEEALARLSCFEGIPAPYDKKKRMVVPNALQVIRMAPGRRFCVLGRLSEEVGWPHAELIKRLEAQRKIKSEAYYVDKKAAKQLKDKATAEANLAAVAPVLEEYG 197
[Close]
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: A0A5J4Z3W8_PORPP (60S ribosomal protein L13a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3W8_PORPP)

HSP 1 Score: 267 bits (683), Expect = 6.020e-88
Identity = 135/196 (68.88%), Postives = 160/196 (81.63%), Query Frame = 3 
Query:   42 EKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYGH 629
            E  VVVD R HLLGRLASIVAK+LL GQKV+V R E I +SG  +R K KY  F +KRMNTNP+RGPFHFR+P+RIFWRT+RGM+PHKT RGQ A+ RLK FEGIP P+DK KRMVVP AL+V+RLAP RKHCVLGRLS EVGW++ D++ RLE KRKV S A+YQ+KKA  +L+ KA  +ADLS VTPVLE++GH
Sbjct:    3 ESVVVVDARAHLLGRLASIVAKELLCGQKVVVTRCEAIEMSGRFIRKKNKYLMFLRKRMNTNPSRGPFHFRAPSRIFWRTVRGMLPHKTERGQEALGRLKVFEGIPPPYDKMKRMVVPDALRVVRLAPRRKHCVLGRLSHEVGWKYQDVLARLETKRKVHSAAYYQRKKALDKLKRKATESADLSKVTPVLEAFGH 198
[Close]
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: A0A6S8ZJI7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZJI7_9STRA)

HSP 1 Score: 267 bits (682), Expect = 9.140e-88
Identity = 135/200 (67.50%), Postives = 165/200 (82.50%), Query Frame = 3 
Query:   36 VLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAE--AAADLSAVTPVLESYGH 629
            +LE  ++VDGR HLLGRLASIV+K+LLSGQKV++VR +++ +SGSL RNKVKYAQFRKKRMNTNP RGPFHF+SPAR+ WRTIRGM  HKT RGQ A+ARL  F+GIP P+DK+KR V+PAAL+V+RL PGR H VLG L+  VGW+H DL++RLE KRKV++EAFYQKKKA  QLR KAE  AA +L+ V  VL + G+
Sbjct:    1 MLENTIIVDGRDHLLGRLASIVSKELLSGQKVVIVRCDEVCVSGSLTRNKVKYAQFRKKRMNTNPGRGPFHFKSPARMVWRTIRGMCHHKTARGQEALARLATFDGIPHPYDKKKRQVIPAALRVMRLKPGRDHTVLGELADSVGWKHHDLLKRLEEKRKVKAEAFYQKKKARTQLREKAEKAAAGELAKVNEVLAAAGY 200
[Close]
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: A0A7S4KBN4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KBN4_9STRA)

HSP 1 Score: 266 bits (680), Expect = 4.130e-87
Identity = 133/206 (64.56%), Postives = 171/206 (83.01%), Query Frame = 3 
Query:   18 SSRGSMVLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAA--DLSAVTPVLESYGH 629
            S R  ++LEK V++DGR HLLGRLAS+VAK+LL+GQKV++VR +Q+V+SGS+VRN+VKY  FR+KRMNTNP+RGPFHF+SP R+ WRTIRGMIPHKT RG  A++RL  FEGIP P+DK+KR VVPAAL++LRL PGR + V+G L+  VGW+H DL++ LE KRKV+++AFYQKKKA ++L+ KAEAA   D+SA   VLES G+
Sbjct:   19 SGRNVIMLEKEVIIDGRDHLLGRLASVVAKELLAGQKVVIVRCDQMVVSGSMVRNRVKYQYFRQKRMNTNPSRGPFHFKSPGRMVWRTIRGMIPHKTARGAEALSRLSTFEGIPHPYDKKKRQVVPAALRILRLKPGRDYTVMGDLAHSVGWKHRDLLKTLEEKRKVKADAFYQKKKARSELKAKAEAAVAGDVSAQNKVLESSGY 224
[Close]
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: A0A7S2DZL3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DZL3_9STRA)

HSP 1 Score: 261 bits (668), Expect = 1.230e-85
Identity = 133/200 (66.50%), Postives = 165/200 (82.50%), Query Frame = 3 
Query:   36 VLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAE--AAADLSAVTPVLESYGH 629
            +LE  ++VDGR HLLGRLAS+VAK+LLSGQKV++VR +Q+ ISGSLVRNKVKYAQFRKKRMNTNP++GP+HF+SPA++ WRTIRGM   KT RGQ A+ARL  FEGIP P+DK+KR V+PAAL+V+RL P R + VLG L+  VGW+H DL++RLE KRKVR+ AFY+KKKA  QLR KAE  AA +L+ V  VLE+ G+
Sbjct:    1 MLENTIIVDGRDHLLGRLASVVAKELLSGQKVVIVRCDQVCISGSLVRNKVKYAQFRKKRMNTNPSKGPYHFKSPAKMVWRTIRGMCHQKTARGQEALARLSTFEGIPHPYDKKKRQVIPAALRVMRLKPSRNYTVLGELANAVGWKHQDLLKRLEDKRKVRAAAFYEKKKAKTQLREKAEKAAAGELAKVNEVLEASGY 200
[Close]
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: A0A7R9Z0L8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z0L8_9STRA)

HSP 1 Score: 263 bits (672), Expect = 1.280e-85
Identity = 128/185 (69.19%), Postives = 161/185 (87.03%), Query Frame = 3 
Query:   30 SMVLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAA 584
            S++LEK V++DGR HLLGRLAS+VAK+LL+GQKV++VR +++V+SGSLVRN+VKYAQFRKKRMNTNP+RGPFHF+SP R+ WRTIRGM+PHKT RG  A++RL  FEGIP P+DK+KR VVPAAL+VLRL PGR + V+G L+  VGW+H DL++ LE KRKV++ AFYQKKKA A+L+ KAEAA
Sbjct:   48 SVMLEKEVIIDGRDHLLGRLASVVAKELLAGQKVVIVRCDEMVVSGSLVRNRVKYAQFRKKRMNTNPSRGPFHFKSPGRMVWRTIRGMLPHKTARGAEALSRLSTFEGIPHPYDKKKRQVVPAALRVLRLKPGRDYTVMGELAHSVGWKHRDLLKTLEEKRKVKAAAFYQKKKARAELKAKAEAA 232
[Close]
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: A0A7S0C8J6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C8J6_9STRA)

HSP 1 Score: 260 bits (664), Expect = 4.970e-85
Identity = 129/200 (64.50%), Postives = 165/200 (82.50%), Query Frame = 3 
Query:   36 VLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEA--AADLSAVTPVLESYGH 629
            +LEKP+VVDGR HLLGRL S+VAK+LL+GQK+++VR +++ +SGSLVRNKVKYAQFR+KRMNTNP +GP+HF+SPAR+ WRT+RGM+ HK+ RG  A+ARL  FEGIPAP+DK KR V+PAAL++LRL   R+H VLG L+ E+GW+H DL+ RLEAKRKV SEAFYQKKKA ++++ KA A  A +L  V  VLE  G+
Sbjct:    1 MLEKPIVVDGRDHLLGRLCSVVAKELLAGQKIVIVRCDEVCVSGSLVRNKVKYAQFRRKRMNTNPGKGPYHFKSPARMVWRTLRGMVNHKSARGTEALARLSTFEGIPAPYDKIKRQVIPAALRILRLKTTRRHTVLGDLAHEIGWKHKDLMTRLEAKRKVESEAFYQKKKAKSEIQQKALASCAGELKEVNKVLEESGY 200
[Close]
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: A0A7S1TDT8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDT8_9RHOD)

HSP 1 Score: 259 bits (661), Expect = 1.330e-84
Identity = 129/194 (66.49%), Postives = 161/194 (82.99%), Query Frame = 3 
Query:   48 PVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYGH 629
            PVVVDGRGHLLGRLAS VAK+LL+GQ+V+VVR E I  SG  +RNK KY  F +KRMNTNP RGP HFRSP+++FWRT+RGM+PHKT RG  A+ARLK FEGIPAP+DK KRMVVP AL+VLRL P RK+C LGR+++EVGW++ D+V+RLEAKRKV SEA+Y+KKKA  +LRV+A+A A +  +   L++YG+
Sbjct:    5 PVVVDGRGHLLGRLASTVAKELLNGQQVVVVRCEDIDQSGKFIRNKNKYLIFLRKRMNTNPTRGPIHFRSPSKMFWRTVRGMLPHKTQRGADALARLKVFEGIPAPYDKTKRMVVPNALRVLRLRPDRKYCRLGRIASEVGWKYADVVDRLEAKRKVSSEAYYEKKKAEGKLRVQAKANAAIQEMETKLQNYGY 198
[Close]
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Match: W7TSL6_9STRA (60s ribosomal protein l13a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSL6_9STRA)

HSP 1 Score: 259 bits (662), Expect = 1.550e-84
Identity = 135/211 (63.98%), Postives = 167/211 (79.15%), Query Frame = 3 
Query:   45 KPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRNKVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMARLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHGDLVERLEAKRKVRSEAFYQKKKANAQLRVKAE--AAADLSAVTPVLESYGH*GGVTAAPSPSAGR 671
            K VV+DGRGHLLGRL+SIVAK+LLSGQKV+VVR E+++ISG LVRN  +Y QF +KR NTNP RGPFH+R+P+RI WRTIRGM+PHKT RG  A+ARL  FEGIPAP+D +KR+VVP ALK+LRL PGR+ C L RL+ EVGW H DLV RLEAKRK+++EA+YQ+KKA    +  AE  AA++LSAV  VL  +G+      AP+P+A R
Sbjct:    6 KEVVIDGRGHLLGRLSSIVAKELLSGQKVVVVRCEELMISGGLVRNHTRYMQFLRKRTNTNPKRGPFHYRAPSRILWRTIRGMLPHKTFRGAQALARLTTFEGIPAPYDTKKRVVVPQALKILRLKPGRRFCTLSRLAHEVGWGHRDLVARLEAKRKIKAEAYYQQKKAGTAAKALAERKAASELSAVNNVLAGFGY----HVAPTPTAER 212
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347796 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9N1_9STRA3.800e-133100.0060S ribosomal protein L13a n=1 Tax=Tribonema minus... [more]
D7G6W9_ECTSI8.640e-9572.0860S ribosomal protein L13a n=2 Tax=Ectocarpus TaxI... [more]
A0A5J4Z3W8_PORPP6.020e-8868.8860S ribosomal protein L13a n=1 Tax=Porphyridium pu... [more]
A0A6S8ZJI7_9STRA9.140e-8867.50Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4KBN4_9STRA4.130e-8764.56Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2DZL3_9STRA1.230e-8566.50Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7R9Z0L8_9STRA1.280e-8569.19Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S0C8J6_9STRA4.970e-8564.50Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1TDT8_9RHOD1.330e-8466.49Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
W7TSL6_9STRA1.550e-8463.9860s ribosomal protein l13a n=1 Tax=Nannochloropsis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_16contigContig_16:256810..259923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347796|estExt_Genemark1.C_Ctg_160034
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
KEGG rclassRC01978
KEGG ReactionR07767,R07768
KEGG ModuleM00177
KEGG Pathwayko00785,ko01100,ko03010,map00785,map01100,map03010
KEGG koko:K02872,ko:K03644
EC2.8.1.8
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002237,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008407,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010243,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016477,GO:0017148,GO:0019222,GO:0019439,GO:0019538,GO:0022416,GO:0022625,GO:0022626,GO:0023052,GO:0030323,GO:0030324,GO:0030595,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031333,GO:0032268,GO:0032269,GO:0032496,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034613,GO:0034641,GO:0034644,GO:0034645,GO:0034655,GO:0035295,GO:0040011,GO:0042221,GO:0042330,GO:0042592,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045087,GO:0045184,GO:0045947,GO:0046483,GO:0046683,GO:0046700,GO:0046907,GO:0048246,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0050900,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051591,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060326,GO:0060425,GO:0060541,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0070972,GO:0071214,GO:0071310,GO:0071320,GO:0071345,GO:0071346,GO:0071407,GO:0071417,GO:0071478,GO:0071479,GO:0071480,GO:0071482,GO:0071493,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097452,GO:0097529,GO:0104004,GO:1901193,GO:1901194,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1904688,GO:1904689,GO:1905517,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
Preferred nameRPL13A
DescriptionBelongs to the universal ribosomal protein uL13 family
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0102@1|root,KOG3204@2759|Eukaryota
Evalue4.81e-96
Seed ortholog2880.D7G6W9
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L13, eukaryotic/archaeal
Ec32 orthologEc-01_011950.1
TranscriptId348118
TrackFilteredModels1
ProteinId347796
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347796gene_2945Tribonema minus UTEX_B_3156 geneContig_16 256810..259923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347796Trimin1|347796|estExt_Genemark1.C_Ctg_160034Tribonema minus UTEX_B_3156 polypeptideContig_16 256891..259752 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2945_5exon_2945_5Tribonema minus UTEX_B_3156 exonContig_16 256810..257115 -
exon_2945_4exon_2945_4Tribonema minus UTEX_B_3156 exonContig_16 258059..258184 -
exon_2945_3exon_2945_3Tribonema minus UTEX_B_3156 exonContig_16 258592..258701 -
exon_2945_2exon_2945_2Tribonema minus UTEX_B_3156 exonContig_16 259614..259753 -
exon_2945_1exon_2945_1Tribonema minus UTEX_B_3156 exonContig_16 259893..259923 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_2945UTR3_2945Tribonema minus UTEX_B_3156 three_prime_UTRContig_16 256810..256890 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2945CDS_2945Tribonema minus UTEX_B_3156 CDSContig_16 259614..259752 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_2945UTR5_2945Tribonema minus UTEX_B_3156 five_prime_UTRContig_16 259893..259923 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2945 ID=mRNA_2945|Name=jgi.p|Trimin1|347796|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=713bp|location=Sequence derived from alignment at Contig_16:256810..259923- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTACTCTCAGCGGCGCCAGCAGCCGAGGCAGCATGGTTCTCGAGAAACCC
GTTGTGGTGGATGGCAGGGGCCACCTGCTGGGGCGCCTGGCGTCCATCGT
GGCGAAGCAGCTGCTGAGCGGCCAGAAGGTCATTGTGGTGCGCGCGGAGC
AGATCGTCATCTCTGGTTCACTCGTACGCAACAAGGTGAAGTACGCGCAG
TTCAGGAAGAAGCGCATGAACACAAACCCCGCGCGGGGTCCGTTCCACTT
CCGCAGCCCCGCCCGCATCTTCTGGAGGACGATCCGCGGCATGATCCCTC
ACAAGACACACCGCGGCCAGCTCGCGATGGCGCGCCTGAAGGCCTTTGAG
GGCATCCCCGCCCCCTTTGACAAGCAGAAGCGCATGGTCGTGCCCGCCGC
GCTCAAGGTCCTGCGCCTCGCCCCCGGCCGCAAGCACTGCGTCCTCGGCC
GCCTCTCCACGGAGGTCGGCTGGAGGCACGGCGACCTCGTGGAGCGCCTC
GAGGCGAAGCGCAAGGTGCGCTCGGAGGCGTTCTACCAGAAGAAGAAGGC
GAACGCGCAGCTGCGCGTCAAGGCGGAGGCGGCGGCGGACCTGAGCGCCG
TGACGCCCGTCCTGGAGTCGTACGGCCACTAGGGCGGCGTCACAGCCGCG
CCGTCGCCGTCGGCGGGTCGAGCGTCGGCGGCGGCGCGCGAAATGCACTG
AGGGTTTGCTCTA
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protein sequence of jgi.p|Trimin1|347796

>Trimin1|347796|estExt_Genemark1.C_Ctg_160034 ID=Trimin1|347796|estExt_Genemark1.C_Ctg_160034|Name=jgi.p|Trimin1|347796|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=200bp
MVLEKPVVVDGRGHLLGRLASIVAKQLLSGQKVIVVRAEQIVISGSLVRN
KVKYAQFRKKRMNTNPARGPFHFRSPARIFWRTIRGMIPHKTHRGQLAMA
RLKAFEGIPAPFDKQKRMVVPAALKVLRLAPGRKHCVLGRLSTEVGWRHG
DLVERLEAKRKVRSEAFYQKKKANAQLRVKAEAAADLSAVTPVLESYGH*
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mRNA from alignment at Contig_16:256810..259923-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2945 ID=mRNA_2945|Name=jgi.p|Trimin1|347796|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3114bp|location=Sequence derived from alignment at Contig_16:256810..259923- (Tribonema minus UTEX_B_3156 )
CTACTCTCAGCGGCGCCAGCAGCCGAGGCAGGTGAGCACGTTGGCGTTGC
CTCCGCAGTGATTATGTCTGCTTTCGACTGGCAAAGCGCCGTTTGGCCTC
TTGTGTCATGCCAGGCGAGCCTTGGCTGATTAACCTGTTTCTGGTCTCTG
CTGCTGTCCTATCACAACAGCATGGTTCTCGAGAAACCCGTTGTGGTGGA
TGGCAGGGGCCACCTGCTGGGGCGCCTGGCGTCCATCGTGGCGAAGCAGC
TGCTGAGCGGCCAGAAGGTCATTGTGGTGCGCGCGGAGCAGATCGTCATC
TCTGGTTCACGTGAGTTATGGTCTGATTTTGTGGATTGGCAAGGTGTGCG
CAAAAATGACAACAGTGGAGTAGCATCATTGCTTGTTATTGAGGCAATGT
AGCCTGTTTTTGTAAAGTGCTACCTGCACTCCTGTCTAGCGTTTGTGTGC
ATCAGTGATTGACGACTCCAACATTGTTCAGCAGCCGCCTGGGCTGTGTG
TGCCTGGTTGACAAGTCGAGACAGCTTGCTGGCCTATGTTGCCTGTGCTG
GTTGACAATGCCTGTAACAAGCTCAAATCAGTACCTCCTCCACTTATGTC
CAGAAATTGCTGTTGCACTATTGACGAAATACTCCCTTGCCCCCGGTGAT
GTAAGACAGAAAGTTGCAGTGCCCTCTCTCGCAACCAGCGTAGCATTGGC
GCTGACACTATCATGCTGATCATGCACACGGCGTATGAGCTGTGTGTTTT
TTGTTGGCGTTGACTGCTGGCAGCTGCCAACTTCACATTGCTGCTGCTAA
CTTCCAACGCTGGAACTTGCTTCAGCGTGGACCATGAGCGGTGCACCCTG
ATGCATATGGTGCTGGCGCATGGAACTTTGGCGCGGGTTGCATAATGGAA
AAGGAAGCTTGCGACAGTGTGCTTGCATGGGCGATTCGCAGGCGGCCGTG
CAGCAGCACAGCACGAAGGGAAAGTCGGGAGGTGCCAAAGTGCGTCATGC
GGAGCACAGGAGCTGGCAGATCACGCCACGGAGCCCATTGAGCCTCAACA
GAGCTGGTGGGATGGGGATGCCTGTTTTAGTGACGAACGTGCACAGCAGG
GGTCGCTCGAACCACTGATATGCACTGTTGCGCTTGGATCGGATGCTACT
GCCTTACCCAACGTGTGTACACAGCTGATTCTCCCTCCTCTTCCCTTGTC
CAATCGCTGTCACCGCGCGCAGTCGTACGCAACAAGGTGAAGTACGCGCA
GTTCAGGAAGAAGCGCATGAACACAAACCCCGCGCGGGGTCCGTTCCACT
TCCGCAGCCCCGCCCGCATCTTCTGGAGGACGGTGAGCACTGCTGCGCGT
CCCGTCAGCGGAGCGCTGACGCAATGCATCCGCTTGACTCGTGTACAAAC
ATCTGTTCAACGTGCACAGTGTTTAAATGTTAACGGTCTCCATCGATACT
GCTGCTGCCAGCAACGCACCACTTTGTAAGGTCAGGCAAGGACTGTCGTT
GTATGTACAGGCAGGTACACGAAGTGCGCTGCGGTGTCACTGATGCCGTT
CACATGAACCCTGCCTAGCCAGACCATTGCGCGCTGCCCCTGGCACTCCT
TCGCTGTCAGCAAGTGTTGTTGCTGCAAGTCGCCTGTGCGCAGTCACACA
CACGGAGCAGCGCTGCAGGCTCTGCACGCGCGAAAGCTGTCGCTCATGCA
CGCCTCTGCCGCTGCTGCTGCCGTTCTTGAGCGCGCCAGATCCGCGGCAT
GATCCCTCACAAGACACACCGCGGCCAGCTCGCGATGGCGCGCCTGAAGG
CCTTTGAGGGCATCCCCGCCCCCTTTGACAAGCAGAAGCGCATGGTCGTG
CCCGCCGCGCTCAAGGTGAGCGCCGCCGAGCACTGCTGCTGGCGCACAGG
CGTGTGGTGTGGTTCAGCGGGCGCCGTGCTTCCGCGCGCTGGCGCCAGTG
CGCATCACAGTTGCAGGTTTTCTGACAGGAACGGTTGCGGCGATGTTGGC
CCTGCGCTGGTCTCGGACCATGAGCACGATGGCGGAGCTGCACGCGGATG
CAGCTCAGCGCTGGGCTGCTCTCTTGCAGGTCGTCCAGGTCTCTGCACGC
ATGAGTGGCGGTGTTGCGACGGACGCGCTTGAGGAGATCCGTCGCCCGCC
TAAGTCACCTTAATCTTTGACTGCTGTGTGAATGGCCAATTGGGATAGGA
CAGCAGGCATCTGCTACGCAACGGTTGCGGATCATGGAGAGAAGGGCGCT
TGGGCCTGAAGAAGTGGCACGTTGGGAGCGGGAGGGGGGGTGGGGGGGTG
CCGGGGCTCTGGCGATGGGTCAGCGGGCTGTCGGTTTGGCAATGACGCTG
TGCGGTTCCTCTGAGGTGCCGCAGTTGTCAATGCAAAAGTGTCCGAGTCA
GCCACACGCCACAGCCACAGACGGCTTGCCGGCATCTTATGCCAACGACC
AGCTGTAGCTTGTGGTTCTGAAGGAGACTGCAGCGCCGCCTCCACTCACG
CCTGCTTGAAGTACCCCATCGACTTCTTGAAGTACGCATCTGGTGCCTTG
GGAGTGTAAGGCACTGTCCGTTTGCATAGCACGGCACCTGACATAGCACC
ACGGACTACAGCACATGACACCACTCCTGTACATGCATGCACAACGCAGC
GCGCGACACAAATGCCCCCCCCCCCCCGCCCACCACCCGCCCCGCCCACA
GACCCTGTTGTACACCATTCCTGTACATGCAACGCGACATTTTTGTCCAC
GCAACGCAACGTGACTCAAATGCCCCCCCCTCCACCCCCACCACCCCCCC
TCGCACAGGTCCTGCGCCTCGCCCCCGGCCGCAAGCACTGCGTCCTCGGC
CGCCTCTCCACGGAGGTCGGCTGGAGGCACGGCGACCTCGTGGAGCGCCT
CGAGGCGAAGCGCAAGGTGCGCTCGGAGGCGTTCTACCAGAAGAAGAAGG
CGAACGCGCAGCTGCGCGTCAAGGCGGAGGCGGCGGCGGACCTGAGCGCC
GTGACGCCCGTCCTGGAGTCGTACGGCCACTAGGGCGGCGTCACAGCCGC
GCCGTCGCCGTCGGCGGGTCGAGCGTCGGCGGCGGCGCGCGAAATGCACT
GAGGGTTTGCTCTA
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Coding sequence (CDS) from alignment at Contig_16:256810..259923-

>mRNA_2945 ID=mRNA_2945|Name=jgi.p|Trimin1|347796|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=600bp|location=Sequence derived from alignment at Contig_16:256810..259923- (Tribonema minus UTEX_B_3156 )
ATGGTTCTCGAGAAACCCGTTGTGGTGGATGGCAGGGGCCACCTGCTGGG
GCGCCTGGCGTCCATCGTGGCGAAGCAGCTGCTGAGCGGCCAGAAGGTCA
TTGTGGTGCGCGCGGAGCAGATCGTCATCTCTGGTTCACTCGTACGCAAC
AAGGTGAAGTACGCGCAGTTCAGGAAGAAGCGCATGAACACAAACCCCGC
GCGGGGTCCGTTCCACTTCCGCAGCCCCGCCCGCATCTTCTGGAGGACGA
TCCGCGGCATGATCCCTCACAAGACACACCGCGGCCAGCTCGCGATGGCG
CGCCTGAAGGCCTTTGAGGGCATCCCCGCCCCCTTTGACAAGCAGAAGCG
CATGGTCGTGCCCGCCGCGCTCAAGGTCCTGCGCCTCGCCCCCGGCCGCA
AGCACTGCGTCCTCGGCCGCCTCTCCACGGAGGTCGGCTGGAGGCACGGC
GACCTCGTGGAGCGCCTCGAGGCGAAGCGCAAGGTGCGCTCGGAGGCGTT
CTACCAGAAGAAGAAGGCGAACGCGCAGCTGCGCGTCAAGGCGGAGGCGG
CGGCGGACCTGAGCGCCGTGACGCCCGTCCTGGAGTCGTACGGCCACTAG
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