Trimin1|347577|estExt_Genemark1.C_Ctg_130084 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|347577
Unique Name	Trimin1\|347577\|estExt_Genemark1.C_Ctg_130084
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	1327

Homology

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BLAST of jgi.p|Trimin1|347577 vs. uniprot
Match: A0A836CKY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKY7_9STRA)

HSP 1 Score: 2294 bits (5945), Expect = 0.000e+0
Identity = 1326/1326 (100.00%), Postives = 1326/1326 (100.00%), Query Frame = 0

Query:    1 MRPLQELDEPLAKAWVRARLQPLMEDDDATEHLAKYVMLLVKGLTDDRAATEETAMGRLRGEVAASFTDNALSRSALSTKEGIARHVQIPSRDTTCRATPSLVLGALQDRALLVNDTARSPLLDEFLQHSAEGFVRDLFGAHAAGKFRRRAHGPRSRSPQRRASAREAPVAMDEEEVIVEGVAGSDARNGDDRAAMFEXXXXXXXXXXXXXXXXXXXXXXXKPQPPTASPKLQPSTASVSVTFVTLVVLFAQHVNDATAEAAALLRQPLPRTRGPVQSRLATEDASRDRVGESGGAKAGGETLLLGGPFAGTAYGSFGGPPRDGAGFGGPPGGGMMQGYSPQRTPXXXXXXXXXXXXXXXXXXXXXLGPMELDLLKQKTGMRREGAPFFSPQERENGGRSAKTGAGGRGEGWGFDDLLAGCPWEGPRAPPTQGDRLSRGCAVRGAGGGRAPXXXXXXXXXXXXXXXXXAGLLYPRVACTEDTITPIPARLSQRKGTSRVFSADAADVYTLRLVGVPEATDPAELIGHFRQFGVVVAAQVRALPFQHDAQGIRNTEAYVQMAELESAKQALASPKAVLDNRFIRVIIGGHNLVAPDGPEAQAAVQAAQAAIAQREEAQARGARQVAKTAEIQKAQRHKAAIMAAQAATRKHMERTLEKRSLLQHLCAQLKDVGGDAEELQRTQAMLESSEREVVELSAGAEAEARTLQEAINRLLRLELLRLEVEAREIGAIIPNFQAVAKAAGIDLPTAGSAPAAPSHPGGGRXXXXXXXXXXGWAPPAAAAPGRGLVKRNLDLRTTCLLVAGVPADVEEPLLSMQFASHGQVDVMQRQPGAAPNGTISFLVQYSDRRSAEAARVRVKEYAGTPLTVSWHEARLTVPGAAXXXXXXXXXXXXAVETVSAADAPGDPXXXKALDAINVVTAAAVPKAVRWQQLLGGSGIXXXXXXXXXXXXXXXXXXXXDEGKRSDKALGAGSRTAPLAVLLPPCREWVVDWAPGRPLRLGLLPSAADELPVIASSFTQAGDRTGQERDSTLAGERGACPGTRDDSDVVRTEEDSKEETPIMARSEGTADGDAAAPAKFFDNLFNGPFEEGKEALVALDGLPHPDPPAALKLVLEHLYTGQVLVHTFHNDTVIQEHNTHEESWSRLMTSFKEHMLLPQFAESLQYRALTGWLTGKHGADLHTIAEHVPAAVLTIVFAQFFDKLFNGPFKESKQALVALDGLPYLDPPATLKLVLEHLYTGQVYKHTLYDDAVIQVAANAHYLGALDLYNACVEHVTKHWADVFTTSSATSAVTPMLLDNVLRGLSLAEDQVGLMAALRVHHSKVKTA 1326
            MRPLQELDEPLAKAWVRARLQPLMEDDDATEHLAKYVMLLVKGLTDDRAATEETAMGRLRGEVAASFTDNALSRSALSTKEGIARHVQIPSRDTTCRATPSLVLGALQDRALLVNDTARSPLLDEFLQHSAEGFVRDLFGAHAAGKFRRRAHGPRSRSPQRRASAREAPVAMDEEEVIVEGVAGSDARNGDDRAAMFEXXXXXXXXXXXXXXXXXXXXXXXKPQPPTASPKLQPSTASVSVTFVTLVVLFAQHVNDATAEAAALLRQPLPRTRGPVQSRLATEDASRDRVGESGGAKAGGETLLLGGPFAGTAYGSFGGPPRDGAGFGGPPGGGMMQGYSPQRTPXXXXXXXXXXXXXXXXXXXXXLGPMELDLLKQKTGMRREGAPFFSPQERENGGRSAKTGAGGRGEGWGFDDLLAGCPWEGPRAPPTQGDRLSRGCAVRGAGGGRAPXXXXXXXXXXXXXXXXXAGLLYPRVACTEDTITPIPARLSQRKGTSRVFSADAADVYTLRLVGVPEATDPAELIGHFRQFGVVVAAQVRALPFQHDAQGIRNTEAYVQMAELESAKQALASPKAVLDNRFIRVIIGGHNLVAPDGPEAQAAVQAAQAAIAQREEAQARGARQVAKTAEIQKAQRHKAAIMAAQAATRKHMERTLEKRSLLQHLCAQLKDVGGDAEELQRTQAMLESSEREVVELSAGAEAEARTLQEAINRLLRLELLRLEVEAREIGAIIPNFQAVAKAAGIDLPTAGSAPAAPSHPGGGRXXXXXXXXXXGWAPPAAAAPGRGLVKRNLDLRTTCLLVAGVPADVEEPLLSMQFASHGQVDVMQRQPGAAPNGTISFLVQYSDRRSAEAARVRVKEYAGTPLTVSWHEARLTVPGAAXXXXXXXXXXXXAVETVSAADAPGDPXXXKALDAINVVTAAAVPKAVRWQQLLGGSGIXXXXXXXXXXXXXXXXXXXXDEGKRSDKALGAGSRTAPLAVLLPPCREWVVDWAPGRPLRLGLLPSAADELPVIASSFTQAGDRTGQERDSTLAGERGACPGTRDDSDVVRTEEDSKEETPIMARSEGTADGDAAAPAKFFDNLFNGPFEEGKEALVALDGLPHPDPPAALKLVLEHLYTGQVLVHTFHNDTVIQEHNTHEESWSRLMTSFKEHMLLPQFAESLQYRALTGWLTGKHGADLHTIAEHVPAAVLTIVFAQFFDKLFNGPFKESKQALVALDGLPYLDPPATLKLVLEHLYTGQVYKHTLYDDAVIQVAANAHYLGALDLYNACVEHVTKHWADVFTTSSATSAVTPMLLDNVLRGLSLAEDQVGLMAALRVHHSKVKTA
Sbjct:    1 MRPLQELDEPLAKAWVRARLQPLMEDDDATEHLAKYVMLLVKGLTDDRAATEETAMGRLRGEVAASFTDNALSRSALSTKEGIARHVQIPSRDTTCRATPSLVLGALQDRALLVNDTARSPLLDEFLQHSAEGFVRDLFGAHAAGKFRRRAHGPRSRSPQRRASAREAPVAMDEEEVIVEGVAGSDARNGDDRAAMFEXXXXXXXXXXXXXXXXXXXXXXXKPQPPTASPKLQPSTASVSVTFVTLVVLFAQHVNDATAEAAALLRQPLPRTRGPVQSRLATEDASRDRVGESGGAKAGGETLLLGGPFAGTAYGSFGGPPRDGAGFGGPPGGGMMQGYSPQRTPXXXXXXXXXXXXXXXXXXXXXLGPMELDLLKQKTGMRREGAPFFSPQERENGGRSAKTGAGGRGEGWGFDDLLAGCPWEGPRAPPTQGDRLSRGCAVRGAGGGRAPXXXXXXXXXXXXXXXXXAGLLYPRVACTEDTITPIPARLSQRKGTSRVFSADAADVYTLRLVGVPEATDPAELIGHFRQFGVVVAAQVRALPFQHDAQGIRNTEAYVQMAELESAKQALASPKAVLDNRFIRVIIGGHNLVAPDGPEAQAAVQAAQAAIAQREEAQARGARQVAKTAEIQKAQRHKAAIMAAQAATRKHMERTLEKRSLLQHLCAQLKDVGGDAEELQRTQAMLESSEREVVELSAGAEAEARTLQEAINRLLRLELLRLEVEAREIGAIIPNFQAVAKAAGIDLPTAGSAPAAPSHPGGGRXXXXXXXXXXGWAPPAAAAPGRGLVKRNLDLRTTCLLVAGVPADVEEPLLSMQFASHGQVDVMQRQPGAAPNGTISFLVQYSDRRSAEAARVRVKEYAGTPLTVSWHEARLTVPGAAXXXXXXXXXXXXAVETVSAADAPGDPXXXKALDAINVVTAAAVPKAVRWQQLLGGSGIXXXXXXXXXXXXXXXXXXXXDEGKRSDKALGAGSRTAPLAVLLPPCREWVVDWAPGRPLRLGLLPSAADELPVIASSFTQAGDRTGQERDSTLAGERGACPGTRDDSDVVRTEEDSKEETPIMARSEGTADGDAAAPAKFFDNLFNGPFEEGKEALVALDGLPHPDPPAALKLVLEHLYTGQVLVHTFHNDTVIQEHNTHEESWSRLMTSFKEHMLLPQFAESLQYRALTGWLTGKHGADLHTIAEHVPAAVLTIVFAQFFDKLFNGPFKESKQALVALDGLPYLDPPATLKLVLEHLYTGQVYKHTLYDDAVIQVAANAHYLGALDLYNACVEHVTKHWADVFTTSSATSAVTPMLLDNVLRGLSLAEDQVGLMAALRVHHSKVKTA 1326

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BLAST of jgi.p|Trimin1|347577 vs. uniprot
Match: A0A835ZAV7_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV7_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.760e-42
Identity = 85/122 (69.67%), Postives = 95/122 (77.87%), Query Frame = 0

Query: 1196 AQFFDKLFNGPFKESKQALVALDGLPYLDPPATLKLVLEHLYTGQVYKHTLYDDAVIQVAANAHYLGALDLYNACVEHVTKHWADVFTTSSATSAVTPMLLDNVLRGLSLAEDQVGLMAALR 1317
            + FFDKLFNGP KE K+ALV LDGLP  DPPA L+LVLEHLYT +V+ HTL +D VIQVA NAHYLGAL LY ACVEHV KHWA+VF TS    AVTP LLD+VL+ L  AE+Q  LMA LR
Sbjct:  138 SDFFDKLFNGPCKEGKEALVELDGLPCPDPPAALRLVLEHLYTEEVFSHTLSNDTVIQVAVNAHYLGALQLYEACVEHVAKHWAEVFATSDTVHAVTPTLLDDVLQTLLTAENQGRLMATLR 259

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BLAST of jgi.p|Trimin1|347577 vs. uniprot
Match: A0A835ZFK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFK8_9STRA)

HSP 1 Score: 151 bits (381), Expect = 8.500e-37
Identity = 82/134 (61.19%), Postives = 98/134 (73.13%), Query Frame = 0

Query: 1195 FAQFFDKLFNGPFKESKQALVALDGLPYLDPPATLKLVLEHLYTGQVYKHTLYDDAVIQVAANAHYLGALDLYNACVEHVTKHWADVFTTSSATSAVT--------PM--LLDNVLRGLSLAEDQVGLMAALRV 1318
            F +FFDKLFN P KE +QALV L  LPY DPPA L+LVLEHLYTGQV KHTLYDDA +QVAANAHYLGA  LY+ACV+HV +HWA VF T+ A SAVT        P+  L+++V+  L    DQ+GL+A + V
Sbjct:   63 FGEFFDKLFNRPRKE-RQALVKLGRLPYPDPPAALRLVLEHLYTGQVSKHTLYDDAALQVAANAHYLGAQALYDACVQHVAEHWAGVFATNCAASAVTLVNRDDQRPLATLVNDVMHALPAEADQLGLIAMVAV 195

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BLAST of jgi.p|Trimin1|347577 vs. uniprot
Match: A0A835ZJ81_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ81_9STRA)

HSP 1 Score: 137 bits (345), Expect = 9.070e-31
Identity = 67/124 (54.03%), Postives = 87/124 (70.16%), Query Frame = 0

Query: 1196 AQFFDKLFNGPFKESKQALVALDGLPYLDPPATLKLVLEHLYTGQVYKHTLYDDAVIQVAANAHYLGALDLYNACVEHVTKHWADVFTT--SSATSAVTPMLLDNVLRGLSLAEDQVGLMAALR 1317
            ++FFDKLFNGPF+ES++ALV L GLP+ DPP  L  VLEHLYTGQ+Y   L  D + QVA+NAHYLGA  LY+ CV H+ +HWA V     +S  SA+TP L ++VL+ L+ A D+    AA +
Sbjct:   96 SEFFDKLFNGPFRESREALVTLQGLPHADPPLALARVLEHLYTGQLYPRALKHDVIAQVASNAHYLGATLLYDTCVAHLAQHWAQVLAACGTSGASAMTPALREDVLQALNTASDRAKFKAAYK 219

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BLAST of jgi.p|Trimin1|347577 vs. uniprot
Match: A0A836CHM8_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHM8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.130e-5
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 0

Query: 1185 HVPAAVLTIVFAQFFDKLFNGPFKESKQALVALDGLPYLDPPATLKLVLEHLYTGQVYKHTLYDDAVIQVAANAHYLGALDLYNACVE 1272
            HV  A+L    + FF  L  G F E +QA++ALD +P    PA ++ VL HLYTG +   T  D  ++QVA NA YL A DL+ AC++
Sbjct:   95 HVHGALLASR-SSFFAALLGGGFAEQQQAVIALD-VP-APSPAAVETVLLHLYTGALELPTGGDALLLQVAHNAAYLDAPDLFRACID 179

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347577 vs. uniprot

BLAST of jgi.p|Trimin1|347577 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
A0A836CKY7_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835ZAV7_9STRA	1.760e-42	69.67	BTB domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A835ZFK8_9STRA	8.500e-37	61.19	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835ZJ81_9STRA	9.070e-31	54.03	BTB domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A836CHM8_9STRA	2.130e-5	44.32	BTB domain-containing protein n=1 Tax=Tribonema mi...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 599..631
None	No IPR available	COILS	Coil	Coil	coord: 696..726
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1019..1044
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 749..782
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 944..969
None	No IPR available	CDD	cd18186	BTB_POZ_ZBTB_KLHL-like	coord: 1198..1261 e-value: 4.29029E-7 score: 46.7782
None	No IPR available	CDD	cd18186	BTB_POZ_ZBTB_KLHL-like	coord: 1078..1121 e-value: 8.63954E-5 score: 40.2298
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1159..1311 e-value: 7.0E-9 score: 37.6
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 1196..1276
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 491..587 e-value: 2.8E-7 score: 32.2
IPR045137	RNA-binding protein 26/27	PANTHER	PTHR14398	RNA RECOGNITION RRM/RNP DOMAIN	coord: 509..884
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 508..857

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_13	contig	Contig_13:918824..955711 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347577	mRNA_5829	Tribonema minus UTEX_B_3156	mRNA	Contig_13 918824..957421 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|347577|estExt_Genemark1.C_Ctg_130084 ID=Trimin1|347577|estExt_Genemark1.C_Ctg_130084|Name=jgi.p|Trimin1|347577|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1327bp
MRPLQELDEPLAKAWVRARLQPLMEDDDATEHLAKYVMLLVKGLTDDRAA
TEETAMGRLRGEVAASFTDNALSRSALSTKEGIARHVQIPSRDTTCRATP
SLVLGALQDRALLVNDTARSPLLDEFLQHSAEGFVRDLFGAHAAGKFRRR
AHGPRSRSPQRRASAREAPVAMDEEEVIVEGVAGSDARNGDDRAAMFEDE
ERQQRQGARLAAARAAATRQQKPQPPTASPKLQPSTASVSVTFVTLVVLF
AQHVNDATAEAAALLRQPLPRTRGPVQSRLATEDASRDRVGESGGAKAGG
ETLLLGGPFAGTAYGSFGGPPRDGAGFGGPPGGGMMQGYSPQRTPQLPPF
LPLPPPGPPPIPPPPPLGPMELDLLKQKTGMRREGAPFFSPQERENGGRS
AKTGAGGRGEGWGFDDLLAGCPWEGPRAPPTQGDRLSRGCAVRGAGGGRA
PAAAAAAAAGAAAAAGAAAGLLYPRVACTEDTITPIPARLSQRKGTSRVF
SADAADVYTLRLVGVPEATDPAELIGHFRQFGVVVAAQVRALPFQHDAQG
IRNTEAYVQMAELESAKQALASPKAVLDNRFIRVIIGGHNLVAPDGPEAQ
AAVQAAQAAIAQREEAQARGARQVAKTAEIQKAQRHKAAIMAAQAATRKH
MERTLEKRSLLQHLCAQLKDVGGDAEELQRTQAMLESSEREVVELSAGAE
AEARTLQEAINRLLRLELLRLEVEAREIGAIIPNFQAVAKAAGIDLPTAG
SAPAAPSHPGGGRGGRGRGRGRGGWAPPAAAAPGRGLVKRNLDLRTTCLL
VAGVPADVEEPLLSMQFASHGQVDVMQRQPGAAPNGTISFLVQYSDRRSA
EAARVRVKEYAGTPLTVSWHEARLTVPGAAAAAAAAAPPAAAAVETVSAA
DAPGDPAAAKALDAINVVTAAAVPKAVRWQQLLGGSGIIGGGGSIGGGGS
SGGGSSSGDEGKRSDKALGAGSRTAPLAVLLPPCREWVVDWAPGRPLRLG
LLPSAADELPVIASSFTQAGDRTGQERDSTLAGERGACPGTRDDSDVVRT
EEDSKEETPIMARSEGTADGDAAAPAKFFDNLFNGPFEEGKEALVALDGL
PHPDPPAALKLVLEHLYTGQVLVHTFHNDTVIQEHNTHEESWSRLMTSFK
EHMLLPQFAESLQYRALTGWLTGKHGADLHTIAEHVPAAVLTIVFAQFFD
KLFNGPFKESKQALVALDGLPYLDPPATLKLVLEHLYTGQVYKHTLYDDA
VIQVAANAHYLGALDLYNACVEHVTKHWADVFTTSSATSAVTPMLLDNVL
RGLSLAEDQVGLMAALRVHHSKVKTA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011333	SKP1/BTB/POZ_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR045137	RBM26/27
IPR035979	RBD_domain_sf