mRNA_5829 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|347577 vs. uniprot
Match: A0A836CKY7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKY7_9STRA) HSP 1 Score: 2296 bits (5949), Expect = 0.000e+0 Identity = 1326/1326 (100.00%), Postives = 1326/1326 (100.00%), Query Frame = 2
Query: 113 MRPLQELDEPLAKAWVRARLQPLMEDDDATEHLAKYVMLLVKGLTDDRAATEETAMGRLRGEVAASFTDNALSRSALSTKEGIARHVQIPSRDTTCRATPSLVLGALQDRALLVNDTARSPLLDEFLQHSAEGFVRDLFGAHAAGKFRRRAHGPRSRSPQRRASAREAPVAMDEEEVIVEGVAGSDARNGDDRAAMFEXXXXXXXXXXXXXXXXXXXXXXXKPQPPTASPKLQPSTASVSVTFVTLVVLFAQHVNDATAEAAALLRQPLPRTRGPVQSRLATEDASRDRVGESGGAKAGGETLLLGGPFAGTAYGSFGGPPRDGAGFGGPPGGGMMQGYSPQRTPXXXXXXXXXXXXXXXXXXXXXLGPMELDLLKQKTGMRREGAPFFSPQERENGGRSAKTGAGGRGEGWGFDDLLAGCPWEGPRAPPTQGDRLSRGCAVRGAGGGRAPXXXXXXXXXXXXXXXXXAGLLYPRVACTEDTITPIPARLSQRKGTSRVFSADAADVYTLRLVGVPEATDPAELIGHFRQFGVVVAAQVRALPFQHDAQGIRNTEAYVQMAELESAKQALASPKAVLDNRFIRVIIGGHNLVAPDGPEAQAAVQAAQAAIAQREEAQARGARQVAKTAEIQKAQRHKAAIMAAQAATRKHMERTLEKRSLLQHLCAQLKDVGGDAEELQRTQAMLESSEREVVELSAGAEAEARTLQEAINRLLRLELLRLEVEAREIGAIIPNFQAVAKAAGIDLPTAGSAPAAPSHPGGGRXXXXXXXXXXGWAPPAAAAPGRGLVKRNLDLRTTCLLVAGVPADVEEPLLSMQFASHGQVDVMQRQPGAAPNGTISFLVQYSDRRSAEAARVRVKEYAGTPLTVSWHEARLTVPGAAXXXXXXXXXXXXAVETVSAADAPGDPXXXKALDAINVVTAAAVPKAVRWQQLLGGSGIXXXXXXXXXXXXXXXXXXXXDEGKRSDKALGAGSRTAPLAVLLPPCREWVVDWAPGRPLRLGLLPSAADELPVIASSFTQAGDRTGQERDSTLAGERGACPGTRDDSDVVRTEEDSKEETPIMARSEGTADGDAAAPAKFFDNLFNGPFEEGKEALVALDGLPHPDPPAALKLVLEHLYTGQVLVHTFHNDTVIQEHNTHEESWSRLMTSFKEHMLLPQFAESLQYRALTGWLTGKHGADLHTIAEHVPAAVLTIVFAQFFDKLFNGPFKESKQALVALDGLPYLDPPATLKLVLEHLYTGQVYKHTLYDDAVIQVAANAHYLGALDLYNACVEHVTKHWADVFTTSSATSAVTPMLLDNVLRGLSLAEDQVGLMAALRVHHSKVKTA 4090
MRPLQELDEPLAKAWVRARLQPLMEDDDATEHLAKYVMLLVKGLTDDRAATEETAMGRLRGEVAASFTDNALSRSALSTKEGIARHVQIPSRDTTCRATPSLVLGALQDRALLVNDTARSPLLDEFLQHSAEGFVRDLFGAHAAGKFRRRAHGPRSRSPQRRASAREAPVAMDEEEVIVEGVAGSDARNGDDRAAMFEXXXXXXXXXXXXXXXXXXXXXXXKPQPPTASPKLQPSTASVSVTFVTLVVLFAQHVNDATAEAAALLRQPLPRTRGPVQSRLATEDASRDRVGESGGAKAGGETLLLGGPFAGTAYGSFGGPPRDGAGFGGPPGGGMMQGYSPQRTPXXXXXXXXXXXXXXXXXXXXXLGPMELDLLKQKTGMRREGAPFFSPQERENGGRSAKTGAGGRGEGWGFDDLLAGCPWEGPRAPPTQGDRLSRGCAVRGAGGGRAPXXXXXXXXXXXXXXXXXAGLLYPRVACTEDTITPIPARLSQRKGTSRVFSADAADVYTLRLVGVPEATDPAELIGHFRQFGVVVAAQVRALPFQHDAQGIRNTEAYVQMAELESAKQALASPKAVLDNRFIRVIIGGHNLVAPDGPEAQAAVQAAQAAIAQREEAQARGARQVAKTAEIQKAQRHKAAIMAAQAATRKHMERTLEKRSLLQHLCAQLKDVGGDAEELQRTQAMLESSEREVVELSAGAEAEARTLQEAINRLLRLELLRLEVEAREIGAIIPNFQAVAKAAGIDLPTAGSAPAAPSHPGGGRXXXXXXXXXXGWAPPAAAAPGRGLVKRNLDLRTTCLLVAGVPADVEEPLLSMQFASHGQVDVMQRQPGAAPNGTISFLVQYSDRRSAEAARVRVKEYAGTPLTVSWHEARLTVPGAAXXXXXXXXXXXXAVETVSAADAPGDPXXXKALDAINVVTAAAVPKAVRWQQLLGGSGIXXXXXXXXXXXXXXXXXXXXDEGKRSDKALGAGSRTAPLAVLLPPCREWVVDWAPGRPLRLGLLPSAADELPVIASSFTQAGDRTGQERDSTLAGERGACPGTRDDSDVVRTEEDSKEETPIMARSEGTADGDAAAPAKFFDNLFNGPFEEGKEALVALDGLPHPDPPAALKLVLEHLYTGQVLVHTFHNDTVIQEHNTHEESWSRLMTSFKEHMLLPQFAESLQYRALTGWLTGKHGADLHTIAEHVPAAVLTIVFAQFFDKLFNGPFKESKQALVALDGLPYLDPPATLKLVLEHLYTGQVYKHTLYDDAVIQVAANAHYLGALDLYNACVEHVTKHWADVFTTSSATSAVTPMLLDNVLRGLSLAEDQVGLMAALRVHHSKVKTA
Sbjct: 1 MRPLQELDEPLAKAWVRARLQPLMEDDDATEHLAKYVMLLVKGLTDDRAATEETAMGRLRGEVAASFTDNALSRSALSTKEGIARHVQIPSRDTTCRATPSLVLGALQDRALLVNDTARSPLLDEFLQHSAEGFVRDLFGAHAAGKFRRRAHGPRSRSPQRRASAREAPVAMDEEEVIVEGVAGSDARNGDDRAAMFEXXXXXXXXXXXXXXXXXXXXXXXKPQPPTASPKLQPSTASVSVTFVTLVVLFAQHVNDATAEAAALLRQPLPRTRGPVQSRLATEDASRDRVGESGGAKAGGETLLLGGPFAGTAYGSFGGPPRDGAGFGGPPGGGMMQGYSPQRTPXXXXXXXXXXXXXXXXXXXXXLGPMELDLLKQKTGMRREGAPFFSPQERENGGRSAKTGAGGRGEGWGFDDLLAGCPWEGPRAPPTQGDRLSRGCAVRGAGGGRAPXXXXXXXXXXXXXXXXXAGLLYPRVACTEDTITPIPARLSQRKGTSRVFSADAADVYTLRLVGVPEATDPAELIGHFRQFGVVVAAQVRALPFQHDAQGIRNTEAYVQMAELESAKQALASPKAVLDNRFIRVIIGGHNLVAPDGPEAQAAVQAAQAAIAQREEAQARGARQVAKTAEIQKAQRHKAAIMAAQAATRKHMERTLEKRSLLQHLCAQLKDVGGDAEELQRTQAMLESSEREVVELSAGAEAEARTLQEAINRLLRLELLRLEVEAREIGAIIPNFQAVAKAAGIDLPTAGSAPAAPSHPGGGRXXXXXXXXXXGWAPPAAAAPGRGLVKRNLDLRTTCLLVAGVPADVEEPLLSMQFASHGQVDVMQRQPGAAPNGTISFLVQYSDRRSAEAARVRVKEYAGTPLTVSWHEARLTVPGAAXXXXXXXXXXXXAVETVSAADAPGDPXXXKALDAINVVTAAAVPKAVRWQQLLGGSGIXXXXXXXXXXXXXXXXXXXXDEGKRSDKALGAGSRTAPLAVLLPPCREWVVDWAPGRPLRLGLLPSAADELPVIASSFTQAGDRTGQERDSTLAGERGACPGTRDDSDVVRTEEDSKEETPIMARSEGTADGDAAAPAKFFDNLFNGPFEEGKEALVALDGLPHPDPPAALKLVLEHLYTGQVLVHTFHNDTVIQEHNTHEESWSRLMTSFKEHMLLPQFAESLQYRALTGWLTGKHGADLHTIAEHVPAAVLTIVFAQFFDKLFNGPFKESKQALVALDGLPYLDPPATLKLVLEHLYTGQVYKHTLYDDAVIQVAANAHYLGALDLYNACVEHVTKHWADVFTTSSATSAVTPMLLDNVLRGLSLAEDQVGLMAALRVHHSKVKTA 1326
BLAST of jgi.p|Trimin1|347577 vs. uniprot
Match: A0A835ZAV7_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV7_9STRA) HSP 1 Score: 169 bits (427), Expect = 1.820e-42 Identity = 85/122 (69.67%), Postives = 95/122 (77.87%), Query Frame = 2
Query: 3698 AQFFDKLFNGPFKESKQALVALDGLPYLDPPATLKLVLEHLYTGQVYKHTLYDDAVIQVAANAHYLGALDLYNACVEHVTKHWADVFTTSSATSAVTPMLLDNVLRGLSLAEDQVGLMAALR 4063
+ FFDKLFNGP KE K+ALV LDGLP DPPA L+LVLEHLYT +V+ HTL +D VIQVA NAHYLGAL LY ACVEHV KHWA+VF TS AVTP LLD+VL+ L AE+Q LMA LR
Sbjct: 138 SDFFDKLFNGPCKEGKEALVELDGLPCPDPPAALRLVLEHLYTEEVFSHTLSNDTVIQVAVNAHYLGALQLYEACVEHVAKHWAEVFATSDTVHAVTPTLLDDVLQTLLTAENQGRLMATLR 259
BLAST of jgi.p|Trimin1|347577 vs. uniprot
Match: A0A835ZFK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFK8_9STRA) HSP 1 Score: 151 bits (381), Expect = 8.780e-37 Identity = 82/134 (61.19%), Postives = 98/134 (73.13%), Query Frame = 2
Query: 3695 FAQFFDKLFNGPFKESKQALVALDGLPYLDPPATLKLVLEHLYTGQVYKHTLYDDAVIQVAANAHYLGALDLYNACVEHVTKHWADVFTTSSATSAVT--------PM--LLDNVLRGLSLAEDQVGLMAALRV 4066
F +FFDKLFN P KE +QALV L LPY DPPA L+LVLEHLYTGQV KHTLYDDA +QVAANAHYLGA LY+ACV+HV +HWA VF T+ A SAVT P+ L+++V+ L DQ+GL+A + V
Sbjct: 63 FGEFFDKLFNRPRKE-RQALVKLGRLPYPDPPAALRLVLEHLYTGQVSKHTLYDDAALQVAANAHYLGAQALYDACVQHVAEHWAGVFATNCAASAVTLVNRDDQRPLATLVNDVMHALPAEADQLGLIAMVAV 195
BLAST of jgi.p|Trimin1|347577 vs. uniprot
Match: A0A835ZJ81_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ81_9STRA) HSP 1 Score: 137 bits (345), Expect = 9.410e-31 Identity = 67/124 (54.03%), Postives = 87/124 (70.16%), Query Frame = 2
Query: 3698 AQFFDKLFNGPFKESKQALVALDGLPYLDPPATLKLVLEHLYTGQVYKHTLYDDAVIQVAANAHYLGALDLYNACVEHVTKHWADVFTT--SSATSAVTPMLLDNVLRGLSLAEDQVGLMAALR 4063
++FFDKLFNGPF+ES++ALV L GLP+ DPP L VLEHLYTGQ+Y L D + QVA+NAHYLGA LY+ CV H+ +HWA V +S SA+TP L ++VL+ L+ A D+ AA +
Sbjct: 96 SEFFDKLFNGPFRESREALVTLQGLPHADPPLALARVLEHLYTGQLYPRALKHDVIAQVASNAHYLGATLLYDTCVAHLAQHWAQVLAACGTSGASAMTPALREDVLQALNTASDRAKFKAAYK 219
BLAST of jgi.p|Trimin1|347577 vs. uniprot
Match: A0A836CHM8_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHM8_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 2.200e-5 Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 2
Query: 3665 HVPAAVLTIVFAQFFDKLFNGPFKESKQALVALDGLPYLDPPATLKLVLEHLYTGQVYKHTLYDDAVIQVAANAHYLGALDLYNACVE 3928
HV A+L + FF L G F E +QA++ALD +P PA ++ VL HLYTG + T D ++QVA NA YL A DL+ AC++
Sbjct: 95 HVHGALLASR-SSFFAALLGGGFAEQQQAVIALD-VP-APSPAAVETVLLHLYTGALELPTGGDALLLQVAHNAAYLDAPDLFRACID 179 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347577 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5829 ID=mRNA_5829|Name=jgi.p|Trimin1|347577|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4093bp|location=Sequence derived from alignment at Contig_13:918824..957421- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAAAGCCGTGTTCGGAGCAGGTGCTAGGAAACAGGGAGCGGCGCGCTGCAback to top protein sequence of jgi.p|Trimin1|347577 >Trimin1|347577|estExt_Genemark1.C_Ctg_130084 ID=Trimin1|347577|estExt_Genemark1.C_Ctg_130084|Name=jgi.p|Trimin1|347577|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1327bp MRPLQELDEPLAKAWVRARLQPLMEDDDATEHLAKYVMLLVKGLTDDRAAback to top mRNA from alignment at Contig_13:918824..957421- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5829 ID=mRNA_5829|Name=jgi.p|Trimin1|347577|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=38598bp|location=Sequence derived from alignment at Contig_13:918824..957421- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_13:918824..957421- >mRNA_5829 ID=mRNA_5829|Name=jgi.p|Trimin1|347577|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=3981bp|location=Sequence derived from alignment at Contig_13:918824..957421- (Tribonema minus UTEX_B_3156 )back to top |