Trimin1|347573|estExt_Genemark1.C_Ctg_130074 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|347573
Unique Name	Trimin1\|347573\|estExt_Genemark1.C_Ctg_130074
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	721

Homology

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BLAST of jgi.p|Trimin1|347573 vs. uniprot
Match: A0A835Z9S7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S7_9STRA)

HSP 1 Score: 1066 bits (2756), Expect = 0.000e+0
Identity = 720/720 (100.00%), Postives = 720/720 (100.00%), Query Frame = 0

Query:    1 MPSQQQHALVPGLPVLYLSRELTGPQFKEWLTNNPSEGLRPLGEAWDPNSCASDIIDAFTTSAGNDLCDVASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSNSRDVANTVAPSAGETMIVSAAAALNTDQSAAPRSVGRCGLASARARSPSRGSAPAVRCLCVRAPVFCDASSNEEAVADYQGREVIAPVLSAIRPLNTTFRALVEGATASAPPSLPPYLRCARLEVALKQAGFYNKPPTVAPYELGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGEEPGTPEDLEKLLTNDGYLLQVTVPKGVRQNHVAYFEQDPHGICTQLGVDFRGVTGTEERIAAVPNVIETLLHRDRAVFNVYFPPAACLKLLDERKLHSTDVGYVAPTTASQVINYQRFMGTMVGRHYRNARKGMPAGRSSAKSSFDERLLAPGKPYPKPLTDDSAAIYDSNFAPGAPGTKMFGSLIGSPAAPTLPAAHIGSALDQRNGGDGGGAPKALPHERFFDAALHDGAVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPARKRLRFQPGMPPDGAAGPTAPLDAAXXXXXXXXXXXXXEPPLQQLPWPPHDHQXXXXXXLQLGVPXXXXXXXXXXXXXXLEQPAHSVGEQQHGAAXXXXXXXXXXXXXXAEFTGVPPLLPPPSLVAXXPAPPAPGAADPGAAHTGLDMTLQQ 720
            MPSQQQHALVPGLPVLYLSRELTGPQFKEWLTNNPSEGLRPLGEAWDPNSCASDIIDAFTTSAGNDLCDVASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSNSRDVANTVAPSAGETMIVSAAAALNTDQSAAPRSVGRCGLASARARSPSRGSAPAVRCLCVRAPVFCDASSNEEAVADYQGREVIAPVLSAIRPLNTTFRALVEGATASAPPSLPPYLRCARLEVALKQAGFYNKPPTVAPYELGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGEEPGTPEDLEKLLTNDGYLLQVTVPKGVRQNHVAYFEQDPHGICTQLGVDFRGVTGTEERIAAVPNVIETLLHRDRAVFNVYFPPAACLKLLDERKLHSTDVGYVAPTTASQVINYQRFMGTMVGRHYRNARKGMPAGRSSAKSSFDERLLAPGKPYPKPLTDDSAAIYDSNFAPGAPGTKMFGSLIGSPAAPTLPAAHIGSALDQRNGGDGGGAPKALPHERFFDAALHDGAVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPARKRLRFQPGMPPDGAAGPTAPLDAAXXXXXXXXXXXXXEPPLQQLPWPPHDHQXXXXXXLQLGVPXXXXXXXXXXXXXXLEQPAHSVGEQQHGAAXXXXXXXXXXXXXXAEFTGVPPLLPPPSLVAXXPAPPAPGAADPGAAHTGLDMTLQQ
Sbjct:    1 MPSQQQHALVPGLPVLYLSRELTGPQFKEWLTNNPSEGLRPLGEAWDPNSCASDIIDAFTTSAGNDLCDVASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSNSRDVANTVAPSAGETMIVSAAAALNTDQSAAPRSVGRCGLASARARSPSRGSAPAVRCLCVRAPVFCDASSNEEAVADYQGREVIAPVLSAIRPLNTTFRALVEGATASAPPSLPPYLRCARLEVALKQAGFYNKPPTVAPYELGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGEEPGTPEDLEKLLTNDGYLLQVTVPKGVRQNHVAYFEQDPHGICTQLGVDFRGVTGTEERIAAVPNVIETLLHRDRAVFNVYFPPAACLKLLDERKLHSTDVGYVAPTTASQVINYQRFMGTMVGRHYRNARKGMPAGRSSAKSSFDERLLAPGKPYPKPLTDDSAAIYDSNFAPGAPGTKMFGSLIGSPAAPTLPAAHIGSALDQRNGGDGGGAPKALPHERFFDAALHDGAVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPARKRLRFQPGMPPDGAAGPTAPLDAAXXXXXXXXXXXXXEPPLQQLPWPPHDHQXXXXXXLQLGVPXXXXXXXXXXXXXXLEQPAHSVGEQQHGAAXXXXXXXXXXXXXXAEFTGVPPLLPPPSLVAXXPAPPAPGAADPGAAHTGLDMTLQQ 720

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BLAST of jgi.p|Trimin1|347573 vs. uniprot
Match: A0A836CDZ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.140e-5
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 0

Query:   18 LSRELTGPQFKEWLTNNPSEGLRPLGEAWDPNSCASDIIDAFT 60
            L ++++G QFKEWL+ N  EGL PLG+AWD      DI++AFT
Sbjct:  121 LRQQMSGEQFKEWLSKNVDEGLHPLGKAWDTGVTLRDIVNAFT 163

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347573 vs. uniprot

BLAST of jgi.p|Trimin1|347573 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835Z9S7_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CDZ8_9STRA	6.140e-5	53.49	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 609..633
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 678..704
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 634..653
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 487..508
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 270..296
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 568..720

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_13	contig	Contig_13:806084..814565 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347573	mRNA_5820	Tribonema minus UTEX_B_3156	mRNA	Contig_13 806084..814565 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|347573|estExt_Genemark1.C_Ctg_130074 ID=Trimin1|347573|estExt_Genemark1.C_Ctg_130074|Name=jgi.p|Trimin1|347573|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=721bp
MPSQQQHALVPGLPVLYLSRELTGPQFKEWLTNNPSEGLRPLGEAWDPNS
CASDIIDAFTTSAGNDLCDVASRNPSEGLRPLGEAWDPNSCARDIIDAFT
TSVGNDLCARSNSRDVANTVAPSAGETMIVSAAAALNTDQSAAPRSVGRC
GLASARARSPSRGSAPAVRCLCVRAPVFCDASSNEEAVADYQGREVIAPV
LSAIRPLNTTFRALVEGATASAPPSLPPYLRCARLEVALKQAGFYNKPPT
VAPYELGLGAGGGAGGGGAGARRGKAAGRGKGKGKGGRGEEPGTPEDLEK
LLTNDGYLLQVTVPKGVRQNHVAYFEQDPHGICTQLGVDFRGVTGTEERI
AAVPNVIETLLHRDRAVFNVYFPPAACLKLLDERKLHSTDVGYVAPTTAS
QVINYQRFMGTMVGRHYRNARKGMPAGRSSAKSSFDERLLAPGKPYPKPL
TDDSAAIYDSNFAPGAPGTKMFGSLIGSPAAPTLPAAHIGSALDQRNGGD
GGGAPKALPHERFFDAALHDGAVAAAAAAAADAAAAAGAEDADAQAKRAA
AAAAAAAAAAAAAGQGPARKRLRFQPGMPPDGAAGPTAPLDAAAAAAAAA
AAAAAPEPPLQQLPWPPHDHQQQAPPPLQLGVPQQPPQLQLQQQQQPLEQ
PAHSVGEQQHGAAAAAAAPAAPAAAPPAEFTGVPPLLPPPSLVAAAPAPP
APGAADPGAAHTGLDMTLQQ*