Trimin1|347500|estExt_Genemark1.C_Ctg_120144 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|347500
Unique Name	Trimin1\|347500\|estExt_Genemark1.C_Ctg_120144
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	518

Homology

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BLAST of jgi.p|Trimin1|347500 vs. uniprot
Match: A0A835ZI43_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI43_9STRA)

HSP 1 Score: 832 bits (2149), Expect = 2.760e-301
Identity = 517/517 (100.00%), Postives = 517/517 (100.00%), Query Frame = 0

Query:    1 MSATLSLLHSFTMRRTSKAVSEMMADSDCSSQGSNSPCGVLFLGASSRSLALSTGYVSARSRISRPDSRIPAPSSPWTSACWSDTEFPPGSSGSDSEDDYDSTIEDLEDEDVGLTATKPSRLQGGFRTPHTVRLSSGASSQASSAPSSTVSCLSTSMWPSPTSLPPAGAAAYDECVTLTMVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPIVNTLHRRYVSTPPRQFCGGDFGATAAAADARPTLAHRYSYSPPPRLTHPHFCRGESNSPPPAAMAPICGSDASASPLPEPRGVTPHSVDRRTAPAPFHRTARGTLENSASGRSHASAASSPGPYSRAPSPPPRDAAPPLGAAAALQPAIRGVLTSSGLTARQVAPRRALARLVRPRAVRRTHASRLFLDAAADALCWARVDRSVWSSSAXXXXXXXXXXXXARRQQELARVPVRSITKVARAGCTVTVRFRGSSGXXXXXXXXXXXXXXXXXXXRRSLVFELDAPADAAALERFIQDLLDDRRA 517
            MSATLSLLHSFTMRRTSKAVSEMMADSDCSSQGSNSPCGVLFLGASSRSLALSTGYVSARSRISRPDSRIPAPSSPWTSACWSDTEFPPGSSGSDSEDDYDSTIEDLEDEDVGLTATKPSRLQGGFRTPHTVRLSSGASSQASSAPSSTVSCLSTSMWPSPTSLPPAGAAAYDECVTLTMVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPIVNTLHRRYVSTPPRQFCGGDFGATAAAADARPTLAHRYSYSPPPRLTHPHFCRGESNSPPPAAMAPICGSDASASPLPEPRGVTPHSVDRRTAPAPFHRTARGTLENSASGRSHASAASSPGPYSRAPSPPPRDAAPPLGAAAALQPAIRGVLTSSGLTARQVAPRRALARLVRPRAVRRTHASRLFLDAAADALCWARVDRSVWSSSAXXXXXXXXXXXXARRQQELARVPVRSITKVARAGCTVTVRFRGSSGXXXXXXXXXXXXXXXXXXXRRSLVFELDAPADAAALERFIQDLLDDRRA
Sbjct:    1 MSATLSLLHSFTMRRTSKAVSEMMADSDCSSQGSNSPCGVLFLGASSRSLALSTGYVSARSRISRPDSRIPAPSSPWTSACWSDTEFPPGSSGSDSEDDYDSTIEDLEDEDVGLTATKPSRLQGGFRTPHTVRLSSGASSQASSAPSSTVSCLSTSMWPSPTSLPPAGAAAYDECVTLTMVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPIVNTLHRRYVSTPPRQFCGGDFGATAAAADARPTLAHRYSYSPPPRLTHPHFCRGESNSPPPAAMAPICGSDASASPLPEPRGVTPHSVDRRTAPAPFHRTARGTLENSASGRSHASAASSPGPYSRAPSPPPRDAAPPLGAAAALQPAIRGVLTSSGLTARQVAPRRALARLVRPRAVRRTHASRLFLDAAADALCWARVDRSVWSSSAXXXXXXXXXXXXARRQQELARVPVRSITKVARAGCTVTVRFRGSSGXXXXXXXXXXXXXXXXXXXRRSLVFELDAPADAAALERFIQDLLDDRRA 517

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347500 vs. uniprot

BLAST of jgi.p|Trimin1|347500 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZI43_9STRA	2.760e-301	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 316..336
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..214
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..355
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..141

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_12	contig	Contig_12:1270792..1273039 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347500	mRNA_3816	Tribonema minus UTEX_B_3156	mRNA	Contig_12 1270792..1273039 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|347500|estExt_Genemark1.C_Ctg_120144 ID=Trimin1|347500|estExt_Genemark1.C_Ctg_120144|Name=jgi.p|Trimin1|347500|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=518bp
MSATLSLLHSFTMRRTSKAVSEMMADSDCSSQGSNSPCGVLFLGASSRSL
ALSTGYVSARSRISRPDSRIPAPSSPWTSACWSDTEFPPGSSGSDSEDDY
DSTIEDLEDEDVGLTATKPSRLQGGFRTPHTVRLSSGASSQASSAPSSTV
SCLSTSMWPSPTSLPPAGAAAYDECVTLTMVPAAAAAAASAQRAQHPPDH
HARLRSPPPPAPIVNTLHRRYVSTPPRQFCGGDFGATAAAADARPTLAHR
YSYSPPPRLTHPHFCRGESNSPPPAAMAPICGSDASASPLPEPRGVTPHS
VDRRTAPAPFHRTARGTLENSASGRSHASAASSPGPYSRAPSPPPRDAAP
PLGAAAALQPAIRGVLTSSGLTARQVAPRRALARLVRPRAVRRTHASRLF
LDAAADALCWARVDRSVWSSSASSSSGSGSGGGGARRQQELARVPVRSIT
KVARAGCTVTVRFRGSSGGGGGSIGGAAAAALLRRWWRRSLVFELDAPAD
AAALERFIQDLLDDRRA*