mRNA_3816 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|347500
Unique Name	mRNA_3816
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|347500 vs. uniprot
Match: A0A835ZI43_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI43_9STRA)

HSP 1 Score: 832 bits (2149), Expect = 2.760e-301
Identity = 517/517 (100.00%), Postives = 517/517 (100.00%), Query Frame = 1

Query:    1 MSATLSLLHSFTMRRTSKAVSEMMADSDCSSQGSNSPCGVLFLGASSRSLALSTGYVSARSRISRPDSRIPAPSSPWTSACWSDTEFPPGSSGSDSEDDYDSTIEDLEDEDVGLTATKPSRLQGGFRTPHTVRLSSGASSQASSAPSSTVSCLSTSMWPSPTSLPPAGAAAYDECVTLTMVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPIVNTLHRRYVSTPPRQFCGGDFGATAAAADARPTLAHRYSYSPPPRLTHPHFCRGESNSPPPAAMAPICGSDASASPLPEPRGVTPHSVDRRTAPAPFHRTARGTLENSASGRSHASAASSPGPYSRAPSPPPRDAAPPLGAAAALQPAIRGVLTSSGLTARQVAPRRALARLVRPRAVRRTHASRLFLDAAADALCWARVDRSVWSSSAXXXXXXXXXXXXARRQQELARVPVRSITKVARAGCTVTVRFRGSSGXXXXXXXXXXXXXXXXXXXRRSLVFELDAPADAAALERFIQDLLDDRRA 1551
            MSATLSLLHSFTMRRTSKAVSEMMADSDCSSQGSNSPCGVLFLGASSRSLALSTGYVSARSRISRPDSRIPAPSSPWTSACWSDTEFPPGSSGSDSEDDYDSTIEDLEDEDVGLTATKPSRLQGGFRTPHTVRLSSGASSQASSAPSSTVSCLSTSMWPSPTSLPPAGAAAYDECVTLTMVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPIVNTLHRRYVSTPPRQFCGGDFGATAAAADARPTLAHRYSYSPPPRLTHPHFCRGESNSPPPAAMAPICGSDASASPLPEPRGVTPHSVDRRTAPAPFHRTARGTLENSASGRSHASAASSPGPYSRAPSPPPRDAAPPLGAAAALQPAIRGVLTSSGLTARQVAPRRALARLVRPRAVRRTHASRLFLDAAADALCWARVDRSVWSSSAXXXXXXXXXXXXARRQQELARVPVRSITKVARAGCTVTVRFRGSSGXXXXXXXXXXXXXXXXXXXRRSLVFELDAPADAAALERFIQDLLDDRRA
Sbjct:    1 MSATLSLLHSFTMRRTSKAVSEMMADSDCSSQGSNSPCGVLFLGASSRSLALSTGYVSARSRISRPDSRIPAPSSPWTSACWSDTEFPPGSSGSDSEDDYDSTIEDLEDEDVGLTATKPSRLQGGFRTPHTVRLSSGASSQASSAPSSTVSCLSTSMWPSPTSLPPAGAAAYDECVTLTMVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXAPIVNTLHRRYVSTPPRQFCGGDFGATAAAADARPTLAHRYSYSPPPRLTHPHFCRGESNSPPPAAMAPICGSDASASPLPEPRGVTPHSVDRRTAPAPFHRTARGTLENSASGRSHASAASSPGPYSRAPSPPPRDAAPPLGAAAALQPAIRGVLTSSGLTARQVAPRRALARLVRPRAVRRTHASRLFLDAAADALCWARVDRSVWSSSAXXXXXXXXXXXXARRQQELARVPVRSITKVARAGCTVTVRFRGSSGXXXXXXXXXXXXXXXXXXXRRSLVFELDAPADAAALERFIQDLLDDRRA 517

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347500 vs. uniprot

BLAST of jgi.p|Trimin1|347500 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZI43_9STRA	2.760e-301	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_12	contig	Contig_12:1270792..1273039 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|347500\|estExt_Genemark1.C_Ctg_120144
Hectar predicted targeting category	other localisation
TranscriptId	347822
Track	FilteredModels1
ProteinId	347500

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347500	gene_3816	Tribonema minus UTEX_B_3156	gene	Contig_12 1270792..1273039 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347500	Trimin1\|347500\|estExt_Genemark1.C_Ctg_120144	Tribonema minus UTEX_B_3156	polypeptide	Contig_12 1270792..1273039 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3816_3	exon_3816_3	Tribonema minus UTEX_B_3156	exon	Contig_12 1270792..1271342 -
exon_3816_2	exon_3816_2	Tribonema minus UTEX_B_3156	exon	Contig_12 1271644..1272408 -
exon_3816_1	exon_3816_1	Tribonema minus UTEX_B_3156	exon	Contig_12 1272802..1273039 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3816	CDS_3816	Tribonema minus UTEX_B_3156	CDS	Contig_12 1272802..1273039 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_12:1270792..1273039-
coding sequence from alignment at Contig_12:1270792..1273039-

spliced messenger RNA

>mRNA_3816 ID=mRNA_3816|Name=jgi.p|Trimin1|347500|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1554bp|location=Sequence derived from alignment at Contig_12:1270792..1273039- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCACACTCAGCCTGCTGCACTCCTTCACCATGCGCAGGACCAG
CAAGGCGGTGTCTGAGATGATGGCCGACAGCGACTGCTCCTCTCAAGGCA
GCAACTCGCCCTGCGGTGTGCTTTTTCTGGGAGCGTCTTCGAGGTCCCTG
GCGCTGTCCACGGGCTACGTGAGTGCCAGGAGCAGGATATCCAGGCCTGA
CAGCCGCATACCAGCGCCATCCTCGCCTTGGACTTCAGCGTGCTGGAGCG
ACACGGAATTCCCCCCAGGCAGCAGCGGTAGCGACAGCGAGGACGACTAC
GACTCGACGATAGAGGACCTAGAGGACGAGGATGTGGGCCTCACGGCGAC
CAAACCCAGCAGGCTTCAGGGTGGCTTCCGCACCCCCCACACCGTCAGGC
TCTCGTCGGGAGCCTCGTCGCAGGCCTCCAGCGCACCCTCCAGCACTGTC
AGCTGCTTGAGCACCTCCATGTGGCCCAGCCCCACCAGCCTGCCTCCCGC
AGGCGCCGCAGCATACGACGAGTGCGTCACACTCACCATGGTGCCCGCCG
CCGCCGCCGCGGCGGCCTCGGCGCAGCGCGCGCAGCACCCGCCCGACCAC
CACGCGCGCCTGCGCTCCCCGCCCCCCCCGGCACCCATCGTGAACACGCT
GCACCGCCGCTACGTCAGCACGCCGCCGCGGCAGTTCTGCGGCGGCGACT
TCGGCGCCACCGCCGCCGCCGCCGACGCGCGCCCGACGCTCGCGCACCGC
TACAGCTACAGCCCGCCGCCGCGGCTCACGCACCCGCACTTCTGCCGCGG
TGAGAGCAACAGCCCGCCGCCCGCCGCGATGGCGCCGATCTGCGGCAGCG
ACGCGAGCGCGAGCCCGCTGCCGGAGCCGCGCGGCGTGACGCCGCACTCG
GTGGACAGGAGGACCGCGCCGGCGCCGTTCCACAGGACCGCGCGCGGGAC
ACTGGAGAACAGCGCCAGCGGAAGGAGCCACGCGTCCGCGGCGTCGTCGC
CAGGCCCCTACAGCCGCGCCCCCTCCCCCCCCCCGCGCGACGCGGCGCCG
CCGCTGGGCGCCGCCGCCGCGCTGCAGCCCGCCATCCGCGGCGTCCTCAC
GAGCAGCGGCCTGACGGCGCGCCAGGTGGCGCCGCGCCGCGCGCTCGCGC
GCCTAGTGCGGCCGCGCGCGGTGCGCCGCACGCACGCGTCGCGCCTCTTC
CTCGACGCCGCCGCGGACGCGCTGTGCTGGGCGCGCGTCGACCGCAGCGT
CTGGTCGTCGTCGGCGTCGTCGTCCAGCGGAAGCGGCAGCGGCGGCGGCG
GCGCGCGGCGGCAGCAGGAGCTTGCGCGCGTGCCCGTGCGCTCCATCACC
AAGGTCGCGCGCGCGGGATGCACGGTGACGGTGCGCTTCCGCGGCAGCAG
CGGCGGCGGCGGCGGCAGCATCGGCGGCGCGGCGGCGGCGGCGCTGCTGC
GCCGGTGGTGGCGGCGGAGCCTCGTGTTTGAGCTGGACGCGCCGGCCGAC
GCCGCGGCGCTGGAGCGGTTCATCCAGGACCTGCTCGACGACCGCCGCGC
GTAA

protein sequence of jgi.p|Trimin1|347500

>Trimin1|347500|estExt_Genemark1.C_Ctg_120144 ID=Trimin1|347500|estExt_Genemark1.C_Ctg_120144|Name=jgi.p|Trimin1|347500|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=518bp
MSATLSLLHSFTMRRTSKAVSEMMADSDCSSQGSNSPCGVLFLGASSRSL
ALSTGYVSARSRISRPDSRIPAPSSPWTSACWSDTEFPPGSSGSDSEDDY
DSTIEDLEDEDVGLTATKPSRLQGGFRTPHTVRLSSGASSQASSAPSSTV
SCLSTSMWPSPTSLPPAGAAAYDECVTLTMVPAAAAAAASAQRAQHPPDH
HARLRSPPPPAPIVNTLHRRYVSTPPRQFCGGDFGATAAAADARPTLAHR
YSYSPPPRLTHPHFCRGESNSPPPAAMAPICGSDASASPLPEPRGVTPHS
VDRRTAPAPFHRTARGTLENSASGRSHASAASSPGPYSRAPSPPPRDAAP
PLGAAAALQPAIRGVLTSSGLTARQVAPRRALARLVRPRAVRRTHASRLF
LDAAADALCWARVDRSVWSSSASSSSGSGSGGGGARRQQELARVPVRSIT
KVARAGCTVTVRFRGSSGGGGGSIGGAAAAALLRRWWRRSLVFELDAPAD
AAALERFIQDLLDDRRA*

mRNA from alignment at Contig_12:1270792..1273039-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3816 ID=mRNA_3816|Name=jgi.p|Trimin1|347500|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2248bp|location=Sequence derived from alignment at Contig_12:1270792..1273039- (Tribonema minus UTEX_B_3156 )
ATGTCCGCCACACTCAGCCTGCTGCACTCCTTCACCATGCGCAGGACCAG
CAAGGCGGTGTCTGAGATGATGGCCGACAGCGACTGCTCCTCTCAAGGCA
GCAACTCGCCCTGCGGTGTGCTTTTTCTGGGAGCGTCTTCGAGGTCCCTG
GCGCTGTCCACGGGCTACGTGAGTGCCAGGAGCAGGATATCCAGGCCTGA
CAGCCGCATACCAGCGCCATCCTCGCCTTGGACTTCAGGTAAACCGCCGC
ACACATGTGTACATCAAGATGGCTCGTGCTTCAATCTGCGCCAGAGCAGG
GTCCTTGAAGCCACAAGGCGGAGCAAAGCTTGTGTCAGCGTTGCAGTACT
CGGTTCTACCCGCATCTGGCAGCTTCCCCGTGCAGCAGCTTTGTCGTGTC
ACTTGGGTCTGCTGTGTAGTGACAGCTTCAAGGTGCCGTGTAGTCGAGGT
GGCGGAGCCGTGGTGTGCCCCTGGTGTGCTCCATCAAGGTCTTGTAGAAG
GTTGCACGTGCCTTGGTAGCTGCGACTTTCCTCAGTTGCATCGTGCTGTG
TCGTTTGCACGACGCGTGTGTCGTCATCACAGTCACATCTTCAACCAGTA
TCCGCCTTGCTGACCCTGTTCTTGGCGGCAGCGTGCTGGAGCGACACGGA
ATTCCCCCCAGGCAGCAGCGGTAGCGACAGCGAGGACGACTACGACTCGA
CGATAGAGGACCTAGAGGACGAGGATGTGGGCCTCACGGCGACCAAACCC
AGCAGGCTTCAGGGTGGCTTCCGCACCCCCCACACCGTCAGGCTCTCGTC
GGGAGCCTCGTCGCAGGCCTCCAGCGCACCCTCCAGCACTGTCAGCTGCT
TGAGCACCTCCATGTGGCCCAGCCCCACCAGCCTGCCTCCCGCAGGCGCC
GCAGCATACGACGAGTGCGTCACACTCACCATGGTGCCCGCCGCCGCCGC
CGCGGCGGCCTCGGCGCAGCGCGCGCAGCACCCGCCCGACCACCACGCGC
GCCTGCGCTCCCCGCCCCCCCCGGCACCCATCGTGAACACGCTGCACCGC
CGCTACGTCAGCACGCCGCCGCGGCAGTTCTGCGGCGGCGACTTCGGCGC
CACCGCCGCCGCCGCCGACGCGCGCCCGACGCTCGCGCACCGCTACAGCT
ACAGCCCGCCGCCGCGGCTCACGCACCCGCACTTCTGCCGCGGTGAGAGC
AACAGCCCGCCGCCCGCCGCGATGGCGCCGATCTGCGGCAGCGACGCGAG
CGCGAGCCCGCTGCCGGAGCCGCGCGGCGTGACGCCGCACTCGGTGGACA
GGAGGACCGCGCCGGCGCCGTTCCACAGGACCGCGCGCGGGACACTGGAG
AACAGCGCCAGCGGAAGGAGCCACGCGTCCGCGGCGTCGTCGCCAGGTGA
ACGCCGCGCGTTTCATGCGCGTGCTGCTCCAGCAGACACATGATTTTGTG
CGTGCAGCGCTGCTCACAACTGCGCGGCGCATCGTCGCCGCCTTTCGGAC
GCGACCCATCTGTTGCTGCAGTGGAAGTCGTAGCCATGGCTTCCGCCAGA
TGGACGCAGCAACTGTGCACATGCTGCCGCTTTGCGGCGTTTTCCGCCAT
TGCAGGAAGGCATTGCTATGTGCCTACACTGGTGAAGTTCGCCACCAACA
CGTCCTGCCATCGCCGCCGCCGCCCCTCCCCCCCCGCATCCCCACAGGCC
CCTACAGCCGCGCCCCCTCCCCCCCCCCGCGCGACGCGGCGCCGCCGCTG
GGCGCCGCCGCCGCGCTGCAGCCCGCCATCCGCGGCGTCCTCACGAGCAG
CGGCCTGACGGCGCGCCAGGTGGCGCCGCGCCGCGCGCTCGCGCGCCTAG
TGCGGCCGCGCGCGGTGCGCCGCACGCACGCGTCGCGCCTCTTCCTCGAC
GCCGCCGCGGACGCGCTGTGCTGGGCGCGCGTCGACCGCAGCGTCTGGTC
GTCGTCGGCGTCGTCGTCCAGCGGAAGCGGCAGCGGCGGCGGCGGCGCGC
GGCGGCAGCAGGAGCTTGCGCGCGTGCCCGTGCGCTCCATCACCAAGGTC
GCGCGCGCGGGATGCACGGTGACGGTGCGCTTCCGCGGCAGCAGCGGCGG
CGGCGGCGGCAGCATCGGCGGCGCGGCGGCGGCGGCGCTGCTGCGCCGGT
GGTGGCGGCGGAGCCTCGTGTTTGAGCTGGACGCGCCGGCCGACGCCGCG
GCGCTGGAGCGGTTCATCCAGGACCTGCTCGACGACCGCCGCGCGTAA

Coding sequence (CDS) from alignment at Contig_12:1270792..1273039-

>mRNA_3816 ID=mRNA_3816|Name=jgi.p|Trimin1|347500|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1554bp|location=Sequence derived from alignment at Contig_12:1270792..1273039- (Tribonema minus UTEX_B_3156 )
ATGTCCGCCACACTCAGCCTGCTGCACTCCTTCACCATGCGCAGGACCAG
CAAGGCGGTGTCTGAGATGATGGCCGACAGCGACTGCTCCTCTCAAGGCA
GCAACTCGCCCTGCGGTGTGCTTTTTCTGGGAGCGTCTTCGAGGTCCCTG
GCGCTGTCCACGGGCTACGTGAGTGCCAGGAGCAGGATATCCAGGCCTGA
CAGCCGCATACCAGCGCCATCCTCGCCTTGGACTTCAGCGTGCTGGAGCG
ACACGGAATTCCCCCCAGGCAGCAGCGGTAGCGACAGCGAGGACGACTAC
GACTCGACGATAGAGGACCTAGAGGACGAGGATGTGGGCCTCACGGCGAC
CAAACCCAGCAGGCTTCAGGGTGGCTTCCGCACCCCCCACACCGTCAGGC
TCTCGTCGGGAGCCTCGTCGCAGGCCTCCAGCGCACCCTCCAGCACTGTC
AGCTGCTTGAGCACCTCCATGTGGCCCAGCCCCACCAGCCTGCCTCCCGC
AGGCGCCGCAGCATACGACGAGTGCGTCACACTCACCATGGTGCCCGCCG
CCGCCGCCGCGGCGGCCTCGGCGCAGCGCGCGCAGCACCCGCCCGACCAC
CACGCGCGCCTGCGCTCCCCGCCCCCCCCGGCACCCATCGTGAACACGCT
GCACCGCCGCTACGTCAGCACGCCGCCGCGGCAGTTCTGCGGCGGCGACT
TCGGCGCCACCGCCGCCGCCGCCGACGCGCGCCCGACGCTCGCGCACCGC
TACAGCTACAGCCCGCCGCCGCGGCTCACGCACCCGCACTTCTGCCGCGG
TGAGAGCAACAGCCCGCCGCCCGCCGCGATGGCGCCGATCTGCGGCAGCG
ACGCGAGCGCGAGCCCGCTGCCGGAGCCGCGCGGCGTGACGCCGCACTCG
GTGGACAGGAGGACCGCGCCGGCGCCGTTCCACAGGACCGCGCGCGGGAC
ACTGGAGAACAGCGCCAGCGGAAGGAGCCACGCGTCCGCGGCGTCGTCGC
CAGGCCCCTACAGCCGCGCCCCCTCCCCCCCCCCGCGCGACGCGGCGCCG
CCGCTGGGCGCCGCCGCCGCGCTGCAGCCCGCCATCCGCGGCGTCCTCAC
GAGCAGCGGCCTGACGGCGCGCCAGGTGGCGCCGCGCCGCGCGCTCGCGC
GCCTAGTGCGGCCGCGCGCGGTGCGCCGCACGCACGCGTCGCGCCTCTTC
CTCGACGCCGCCGCGGACGCGCTGTGCTGGGCGCGCGTCGACCGCAGCGT
CTGGTCGTCGTCGGCGTCGTCGTCCAGCGGAAGCGGCAGCGGCGGCGGCG
GCGCGCGGCGGCAGCAGGAGCTTGCGCGCGTGCCCGTGCGCTCCATCACC
AAGGTCGCGCGCGCGGGATGCACGGTGACGGTGCGCTTCCGCGGCAGCAG
CGGCGGCGGCGGCGGCAGCATCGGCGGCGCGGCGGCGGCGGCGCTGCTGC
GCCGGTGGTGGCGGCGGAGCCTCGTGTTTGAGCTGGACGCGCCGGCCGAC
GCCGCGGCGCTGGAGCGGTTCATCCAGGACCTGCTCGACGACCGCCGCGC
GTAA