Trimin1|347342|estExt_Genemark1.C_Ctg_110003 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|347342
Unique NameTrimin1|347342|estExt_Genemark1.C_Ctg_110003
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length788
Homology
BLAST of jgi.p|Trimin1|347342 vs. uniprot
Match: A0A835ZDS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDS1_9STRA)

HSP 1 Score: 1169 bits (3025), Expect = 0.000e+0
Identity = 787/787 (100.00%), Postives = 787/787 (100.00%), Query Frame = 0
Query:    1 MADVDDLNDETFGEGDGGELPAFFAAGGGGDLEFAALMDDLKASALQQLGEEDGDVILAGSDGDAGALQQQDTDGDWAQMQKQFELMSRDFLQYQNQSDARGGGISSGGAGSDPLGSIDQQTGAIAFGMMQQLGMDEGGSPRRHTSXXXXXXXAAMSLDDIEARFSRQGQYAQXXXXXXXXXXXXXXXXXTHSAPMGVPGQGAGGPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRGLXXXXMRGGLPGPPPMGGQPMVMGPMGVPMGVGMGPQGGMGGMVPLHQLPLHVQHALQMQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAANATAQHAPPSGPRPFAPQADARLYPRGELMSGYDVRFVTTALLRALDTQDPYNEDFYFHNLVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFSLLIQRSAVPLVQAGGGGCRALPSVTLPPLALPVWQETKELSKKVAKEQEANLKVRTKEWESVNRVLGHTSKSVASHPRALLNLGVNLEEKGDQGQLFGTPLWRARGCVQTATAALLKVEELQHFIRLPALPNEKRASVMAELQTTASSLGSSLGLQPRSEAAMEASAAVRAAFQDPNASAAQRTAAVDAVTSALEGTLDLRLLATLLELAKGQRVATRALLLLRPEERWAIVPAVLALTLARMPQGXXXXXXXXXXXXXXXXXXXACLRGLVQSAQPPPPLSILKRCLELVMAAHRGRGSLKPALADRARAEAMHAVLRRGAQASVATSAEAVEEWSRLQADFLAEATQAGPQQ 787
            MADVDDLNDETFGEGDGGELPAFFAAGGGGDLEFAALMDDLKASALQQLGEEDGDVILAGSDGDAGALQQQDTDGDWAQMQKQFELMSRDFLQYQNQSDARGGGISSGGAGSDPLGSIDQQTGAIAFGMMQQLGMDEGGSPRRHTSXXXXXXXAAMSLDDIEARFSRQGQYAQXXXXXXXXXXXXXXXXXTHSAPMGVPGQGAGGPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRGLXXXXMRGGLPGPPPMGGQPMVMGPMGVPMGVGMGPQGGMGGMVPLHQLPLHVQHALQMQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAANATAQHAPPSGPRPFAPQADARLYPRGELMSGYDVRFVTTALLRALDTQDPYNEDFYFHNLVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFSLLIQRSAVPLVQAGGGGCRALPSVTLPPLALPVWQETKELSKKVAKEQEANLKVRTKEWESVNRVLGHTSKSVASHPRALLNLGVNLEEKGDQGQLFGTPLWRARGCVQTATAALLKVEELQHFIRLPALPNEKRASVMAELQTTASSLGSSLGLQPRSEAAMEASAAVRAAFQDPNASAAQRTAAVDAVTSALEGTLDLRLLATLLELAKGQRVATRALLLLRPEERWAIVPAVLALTLARMPQGXXXXXXXXXXXXXXXXXXXACLRGLVQSAQPPPPLSILKRCLELVMAAHRGRGSLKPALADRARAEAMHAVLRRGAQASVATSAEAVEEWSRLQADFLAEATQAGPQQ
Sbjct:    1 MADVDDLNDETFGEGDGGELPAFFAAGGGGDLEFAALMDDLKASALQQLGEEDGDVILAGSDGDAGALQQQDTDGDWAQMQKQFELMSRDFLQYQNQSDARGGGISSGGAGSDPLGSIDQQTGAIAFGMMQQLGMDEGGSPRRHTSXXXXXXXAAMSLDDIEARFSRQGQYAQXXXXXXXXXXXXXXXXXTHSAPMGVPGQGAGGPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRGLXXXXMRGGLPGPPPMGGQPMVMGPMGVPMGVGMGPQGGMGGMVPLHQLPLHVQHALQMQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAANATAQHAPPSGPRPFAPQADARLYPRGELMSGYDVRFVTTALLRALDTQDPYNEDFYFHNLVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFSLLIQRSAVPLVQAGGGGCRALPSVTLPPLALPVWQETKELSKKVAKEQEANLKVRTKEWESVNRVLGHTSKSVASHPRALLNLGVNLEEKGDQGQLFGTPLWRARGCVQTATAALLKVEELQHFIRLPALPNEKRASVMAELQTTASSLGSSLGLQPRSEAAMEASAAVRAAFQDPNASAAQRTAAVDAVTSALEGTLDLRLLATLLELAKGQRVATRALLLLRPEERWAIVPAVLALTLARMPQGXXXXXXXXXXXXXXXXXXXACLRGLVQSAQPPPPLSILKRCLELVMAAHRGRGSLKPALADRARAEAMHAVLRRGAQASVATSAEAVEEWSRLQADFLAEATQAGPQQ 787          
BLAST of jgi.p|Trimin1|347342 vs. uniprot
Match: A0A6H5KT64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT64_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 9.700e-64
Identity = 176/450 (39.11%), Postives = 232/450 (51.56%), Query Frame = 0
Query:  342 PPSGPRPFA--PQADARLYPRGELMSGYDVRFVTTALLRALDTQDPYNEDFYFHNLVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFSLLIQRSAVPLVQAGGGGCRALPSVTLPPLALPVWQETKELSKKVAKEQEANLKVRTKEWESVNRVLGHTSKSVASHPRALLNLG-----VNLEEKGD----QGQLFGTPLWRARGCVQTATAALLKVEELQHFIRLPALPNEKRASVMAELQTTASSLGSSLGLQPRSEAAMEASAAVRAAFQDPNASAAQRTAAVDAVTSALEGTLDLRLLATLLELAKGQRVATRALLLLRPEERWAIVPAVLALTLARMPQGXXXXXXXXXXXXXXXXXXXACLRGLVQSAQPPP--PLSILKRCLELVMAAHRGRGSLKPALADRARAEAMHAVLRRGAQASVATSAEAVEEWSRLQADFLA 778
            PP   +P A  P     ++PRGELM+ YD R+V  A +RALDT DP+N+DFY+HN++R                                        R     ++ GG G     +    P+ LPVWQETKE++KKV +++   +K R ++WES NRVLGH ++S    PRALL L          E G+    +G  F T LWRAR  +Q AT A+L   EL + + LP  P EKRA V   L      L  SLGLQ RS    +A                +   A DA T  LE +LDLR+L+T+LEL KGQ++ +R L +L P +R A+VP+VLALTLAR P                     A    L    Q P   PL IL+RC+ELVM AHRGRG+L  AL   +RAE + AVL++G + S A  AEA  +W+ LQA+F+A
Sbjct:  618 PPGQGKPDARPPLPPIGIFPRGELMTAYDTRYVIMAQMRALDTPDPFNDDFYYHNVMR----------------------------------------RKQEKSLREGGMGQEPNAAAPPMPMPLPVWQETKEIAKKVKEDEADAVKKRIRQWESANRVLGHQARSDVHRPRALLALSEVGGEATPAEAGEVLVSEGAPFETHLWRARLAIQRATNAMLAAFELNYLLHLPTTPPEKRAEVAGRLGDVIVDLAVSLGLQ-RSTILQQA----------------EGKPAPDAST--LEASLDLRVLSTVLELTKGQKLLSRCLAMLSPSQRSALVPSVLALTLARAPAASLRNAPSEQVKADAIRAEEALASELKSILQSPASLPLPILRRCIELVMTAHRGRGTLAGALGSVSRAEVLGAVLQKGGELSEAEGAEAAADWAALQAEFIA 1008          
BLAST of jgi.p|Trimin1|347342 vs. uniprot
Match: D8LNC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC6_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 3.190e-48
Identity = 144/348 (41.38%), Postives = 187/348 (53.74%), Query Frame = 0
Query:  446 AGGG--GCRALPSVTLPPLALPVWQETKELSKKVAKEQEANLKVRTKEWESVNRVLGHTSKSVASHPRALLNLG-------VNLEEKGD----QGQLFGTPLWRARGCVQTATAALLKVEELQHFIRLPALPNEKRASVMAELQTTASSLGSSLGLQPRSEAAMEASAAVRAAFQDPNASAAQRTAAVDAVTSALEGTLDLRLLATLLELAKGQRVATRALLLLRPEERWAIVPAVLALTLARMPQGXXXXXXXXXXXXXXXXXXXACLRGLVQSAQPPP--PLSILKRCLELVMAAHRGRGSLKPALADRARAEAMHAVLRRGAQASVATSAEAVEEWSRLQADFLA 778
            AGG   G R   +    P+ LPVWQETKE++KKV +++   +K R ++WES NRVLGH ++S    PRALL L            E G+    +G  F T LWRAR  +Q AT A+L   EL + + L   P EKRA V   L      L  SLGLQ RS    +A                +   A DA T  LE +LDLR+L+T+LEL KGQ++ +R L +L P +R A+VP+VLALTLAR P                     A    L    Q P   PL IL+RC+ELVM AHRGRG+L  AL   +RAE + AVL++G + S A   EA  +W+ LQ +F+A
Sbjct:  465 AGGADDGIRHQAAAPPMPMPLPVWQETKEIAKKVKEDEADAVKKRIRQWESANRVLGHQARSDVHRPRALLALSGGEAGGEATPAEGGEVLVSEGAPFETHLWRARLAIQRATNAMLAAFELNYLLHLATTPPEKRAEVAGRLGDVIVDLAVSLGLQ-RSTILQQA----------------EGKPAPDAST--LEASLDLRVLSTVLELTKGQKLLSRCLAMLPPSQRSALVPSVLALTLARAPAASLRNAPSEQVKADAIRAEEALASELKNILQSPASLPLPILRRCIELVMTAHRGRGTLAGALGSVSRAEVLGAVLQKGGELSEAEGGEAAADWAALQTEFIA 793          
BLAST of jgi.p|Trimin1|347342 vs. uniprot
Match: A0A7S2WF85_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WF85_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.480e-13
Identity = 114/418 (27.27%), Postives = 164/418 (39.23%), Query Frame = 0
Query:  360 RGELMSGYDVRFVTTALLRALDTQDPYNEDFYFHNLVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFSLLIQRSAVPLVQAGG--GGCRALPSVTLPPLALPVWQETKELSKKVAKEQEANLK--VRTKEWESVNRVLGHTSKSVASHPRALL--------NLGVNLEEKGDQGQL-FGTPLWRARGCVQTATAALLKVEELQHFIRLPALPNEKRASVMAELQTTASSLGSSLGLQPRSEAAMEASAAVRAAFQDPNASAAQRTAAVDAVTSALEGTLDLRLLATLLELAKGQRVATRALLLLRPEERWAIVPAVLALTLARMPQGXXXXXXXXXXXXXXXXXXXACLRGLVQSAQPPPPLSILKRCLELVMAAHRGRGSLKPALADRARAEAMHAVLRRGAQASVATSAE 764
            RG +MS  DV FV    LRAL   DPYNEDFYFHNL                                      L  Q  A    + GG  GG  ++P        LPVW+ETK+  K VA++QE   K   RTKEW + N+ LG  +KS     ++LL        +   N    G   Q  F +  W+AR  ++ A  ALL ++E +  +R      E+   + + L +    L  +LG                  F + N  + + TA + A+ +  +G    +L+A ++ L   Q  A   + L     +  + P +LA  +    +                        G +  A       I K  +E VMA H    SL  +L+ R RAE M  VL+ G QA+    AE
Sbjct:  354 RGAMMSARDVSFVLHVHLRALQISDPYNEDFYFHNL-------------------------------------PLRRQARAEAGAREGGNGGGLSSIP--------LPVWEETKQ--KAVAEKQELRDKFSARTKEWATTNQTLGQVAKSDPHRQKSLLAGLDLVSASQSANAGGDGTDSQAPFSSRGWKARRAIEEARGALLDIDEQRRLLRRNDRTPEQLERIQSVLGSQFLVLQQALG------------------FGEGNFESIEDTATLAAIVALPKGR---KLVARVVRLVPSQAPALLPVSLRTMFSQLPVRPDMLAAAVDAEQRQALLQLQESEDQLLSAFQEVIVQSGALSYA-------IAKATVENVMAPHIRNASLNASLSIRPRAEIMSHVLKLGTQAAGEEDAE 696          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347342 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZDS1_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KT64_9PHAE9.700e-6439.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNC6_ECTSI3.190e-4841.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WF85_9STRA3.480e-1327.27Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 296..323
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 297..353
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 309..325
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 175..195
NoneNo IPR availablePANTHERPTHR21551:SF0PROTEIN ASSOCIATED WITH TOPO II RELATED-1, ISOFORM Acoord: 2..776
NoneNo IPR availableSUPERFAMILY101447Formin homology 2 domain (FH2 domain)coord: 180..470
IPR039900Pat1-likePANTHERPTHR21551TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1coord: 2..776

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_11contigContig_11:26396..37610 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347342mRNA_4699Tribonema minus UTEX_B_3156 mRNAContig_11 25919..37610 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|347342|estExt_Genemark1.C_Ctg_110003 ID=Trimin1|347342|estExt_Genemark1.C_Ctg_110003|Name=jgi.p|Trimin1|347342|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=788bp
MADVDDLNDETFGEGDGGELPAFFAAGGGGDLEFAALMDDLKASALQQLG
EEDGDVILAGSDGDAGALQQQDTDGDWAQMQKQFELMSRDFLQYQNQSDA
RGGGISSGGAGSDPLGSIDQQTGAIAFGMMQQLGMDEGGSPRRHTSPPPP
APPAAMSLDDIEARFSRQGQYAQQQQQPPPPPPPPPPPPPTHSAPMGVPG
QGAGGPQMGPPGFPPHGMMGGPQGSMPMQMMGGGPGDPRGLQMGGMRGGL
PGPPPMGGQPMVMGPMGVPMGVGMGPQGGMGGMVPLHQLPLHVQHALQMQ
HHHEQQQRRIQQLQAQLQTQTQKAPPPPRGKAAANATAQHAPPSGPRPFA
PQADARLYPRGELMSGYDVRFVTTALLRALDTQDPYNEDFYFHNLVRRRE
ERRRRAALLAQAGGGGGALPTGRRRRRRSAAFSLLIQRSAVPLVQAGGGG
CRALPSVTLPPLALPVWQETKELSKKVAKEQEANLKVRTKEWESVNRVLG
HTSKSVASHPRALLNLGVNLEEKGDQGQLFGTPLWRARGCVQTATAALLK
VEELQHFIRLPALPNEKRASVMAELQTTASSLGSSLGLQPRSEAAMEASA
AVRAAFQDPNASAAQRTAAVDAVTSALEGTLDLRLLATLLELAKGQRVAT
RALLLLRPEERWAIVPAVLALTLARMPQGGGAAGGGGGGGGGEEAALMAC
LRGLVQSAQPPPPLSILKRCLELVMAAHRGRGSLKPALADRARAEAMHAV
LRRGAQASVATSAEAVEEWSRLQADFLAEATQAGPQQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039900Pat1-like