Trimin1|347339|estExt_Genemark1.C_Ctg_100175 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|347339
Unique NameTrimin1|347339|estExt_Genemark1.C_Ctg_100175
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length328
Homology
BLAST of jgi.p|Trimin1|347339 vs. uniprot
Match: A0A836CPJ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPJ6_9STRA)

HSP 1 Score: 625 bits (1611), Expect = 1.060e-225
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 0
Query:    1 MGLLLIQQCADFAGRVRRRIFAHYVLGRLGFLALLFFLCHPGTMATFNGKDYLTHRYPNRELAVAASEARLNGDTRRALRKCAVPWNIEQAARAASRAGAASSSSPAASKAKHQIEIASLAFVAAPRPTGFMRRARSFSHAQPFAQSSRSHRAWPANGPTMLLKWSPRPSDSFSATNGAPGSQTQSTAPFDTTGDSSSRRGMTGAMSVPALSAITAGNAGGDDRVSRARRLLGGIAGGAQDAFDTAASAIGCALVTHPLAKHLLTDDDGAGAYGGFQRSSRRRGRGTPGNLTLPASAVAHRRTPASTRVTSYDLVGFMDVDINRGLR 327
            MGLLLIQQCADFAGRVRRRIFAHYVLGRLGFLALLFFLCHPGTMATFNGKDYLTHRYPNRELAVAASEARLNGDTRRALRKCAVPWNIEQAARAASRAGAASSSSPAASKAKHQIEIASLAFVAAPRPTGFMRRARSFSHAQPFAQSSRSHRAWPANGPTMLLKWSPRPSDSFSATNGAPGSQTQSTAPFDTTGDSSSRRGMTGAMSVPALSAITAGNAGGDDRVSRARRLLGGIAGGAQDAFDTAASAIGCALVTHPLAKHLLTDDDGAGAYGGFQRSSRRRGRGTPGNLTLPASAVAHRRTPASTRVTSYDLVGFMDVDINRGLR
Sbjct:    1 MGLLLIQQCADFAGRVRRRIFAHYVLGRLGFLALLFFLCHPGTMATFNGKDYLTHRYPNRELAVAASEARLNGDTRRALRKCAVPWNIEQAARAASRAGAASSSSPAASKAKHQIEIASLAFVAAPRPTGFMRRARSFSHAQPFAQSSRSHRAWPANGPTMLLKWSPRPSDSFSATNGAPGSQTQSTAPFDTTGDSSSRRGMTGAMSVPALSAITAGNAGGDDRVSRARRLLGGIAGGAQDAFDTAASAIGCALVTHPLAKHLLTDDDGAGAYGGFQRSSRRRGRGTPGNLTLPASAVAHRRTPASTRVTSYDLVGFMDVDINRGLR 327          
BLAST of jgi.p|Trimin1|347339 vs. uniprot
Match: A0A836CID3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CID3_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.030e-23
Identity = 113/334 (33.83%), Postives = 148/334 (44.31%), Query Frame = 0
Query:   18 RRIFAHYVLGRLGFLALLFFLCHPGTMATFNGKDYLTHRYPNRELAVAASEARLNGDTRRALRKCAVPWNIEQAARAASRAGAASSSSPAASKAKHQIEIASLAFVAAPRPTGFMRRARSFSHAQPFAQSSRSHRAWPANGPTMLLKWSPRPSDSFSATNGAPGSQTQSTAPFDTTGDSSSRRGMTGAMS---VPALSAITAGNAGGD-DR--------------------VSRARRLLGGIAGGAQDAFDTAASAIGCALVTHPLAKHLLTDDDGAGAYGGFQRSSRRRGRGTPGNLTLPASAVAHRRTPASTRVTSYDLVGFMDVDINRGLR 327
            +RIFAHYVLG+LGFL +LFFLCHPG+ ATF  KDYL+ RYPN +L +A S     G    A ++           R  S  GAAS +  +  + +H +     AFVAAP   G    +  F+     A   + HR W    P    +     + + S+++    +   +  P      S+     T A S   V AL A++AG+ GG  DR                    + RAR  LGG+   AQD  D A   +G ALVTHPL K LL  +          RS                      R  A     +YDLVGFMDVDI+RG R
Sbjct:    8 KRIFAHYVLGKLGFLGILFFLCHPGSQATFCSKDYLSQRYPNLKL-LATSAGHDGGAASEATKRVLRCKREASCTRRKSTEGAASHTVGSV-RGRHSV-----AFVAAPS-LGTATCSSVFAARTNVA--FKPHRPWHTCRPVQDRRARMLFAGASSSSSXXAHALRAAAPPLRAXXCSTPTARTTDARSPAAVTALHAVSAGSGGGGGDRYDGCSYFRGDSGGSSPRRGALRRARGFLGGLRDSAQDVVDDAFGTVGHALVTHPLGKLLLPPEG--------PRSXXXXXXXXXXXXXXXXXXXTESRERARLTSAAYDLVGFMDVDIHRGFR 323          
BLAST of jgi.p|Trimin1|347339 vs. uniprot
Match: D7FS81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS81_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 7.670e-8
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 0
Query:   13 AGRVRRRIFAHYVLGRLGFLALLFFLCHPGTMATFNGKDYLTHRYPNRELAVAASE 68
            AG  + R+F HYVLG++    +LFFLCHPGT+AT +G+ YL +RY NR+L    SE
Sbjct:    2 AGPTKERVFIHYVLGKM---LMLFFLCHPGTLATCDGQAYLRNRYANRDLVKTESE 54          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347339 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CPJ6_9STRA1.060e-225100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CID3_9STRA1.030e-2333.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FS81_ECTSI7.670e-853.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_10contigContig_10:1467992..1469260 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347339mRNA_4372Tribonema minus UTEX_B_3156 mRNAContig_10 1467992..1469360 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|347339|estExt_Genemark1.C_Ctg_100175 ID=Trimin1|347339|estExt_Genemark1.C_Ctg_100175|Name=jgi.p|Trimin1|347339|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=328bp
MGLLLIQQCADFAGRVRRRIFAHYVLGRLGFLALLFFLCHPGTMATFNGK
DYLTHRYPNRELAVAASEARLNGDTRRALRKCAVPWNIEQAARAASRAGA
ASSSSPAASKAKHQIEIASLAFVAAPRPTGFMRRARSFSHAQPFAQSSRS
HRAWPANGPTMLLKWSPRPSDSFSATNGAPGSQTQSTAPFDTTGDSSSRR
GMTGAMSVPALSAITAGNAGGDDRVSRARRLLGGIAGGAQDAFDTAASAI
GCALVTHPLAKHLLTDDDGAGAYGGFQRSSRRRGRGTPGNLTLPASAVAH
RRTPASTRVTSYDLVGFMDVDINRGLR*
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