mRNA_4372 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347339
Unique NamemRNA_4372
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|347339 vs. uniprot
Match: A0A836CPJ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPJ6_9STRA)

HSP 1 Score: 625 bits (1611), Expect = 3.990e-225
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 2 
Query:  101 MGLLLIQQCADFAGRVRRRIFAHYVLGRLGFLALLFFLCHPGTMATFNGKDYLTHRYPNRELAVAASEARLNGDTRRALRKCAVPWNIEQAARAASRAGAASSSSPAASKAKHQIEIASLAFVAAPRPTGFMRRARSFSHAQPFAQSSRSHRAWPANGPTMLLKWSPRPSDSFSATNGAPGSQTQSTAPFDTTGDSSSRRGMTGAMSVPALSAITAGNAGGDDRVSRARRLLGGIAGGAQDAFDTAASAIGCALVTHPLAKHLLTDDDGAGAYGGFQRSSRRRGRGTPGNLTLPASAVAHRRTPASTRVTSYDLVGFMDVDINRGLR 1081
            MGLLLIQQCADFAGRVRRRIFAHYVLGRLGFLALLFFLCHPGTMATFNGKDYLTHRYPNRELAVAASEARLNGDTRRALRKCAVPWNIEQAARAASRAGAASSSSPAASKAKHQIEIASLAFVAAPRPTGFMRRARSFSHAQPFAQSSRSHRAWPANGPTMLLKWSPRPSDSFSATNGAPGSQTQSTAPFDTTGDSSSRRGMTGAMSVPALSAITAGNAGGDDRVSRARRLLGGIAGGAQDAFDTAASAIGCALVTHPLAKHLLTDDDGAGAYGGFQRSSRRRGRGTPGNLTLPASAVAHRRTPASTRVTSYDLVGFMDVDINRGLR
Sbjct:    1 MGLLLIQQCADFAGRVRRRIFAHYVLGRLGFLALLFFLCHPGTMATFNGKDYLTHRYPNRELAVAASEARLNGDTRRALRKCAVPWNIEQAARAASRAGAASSSSPAASKAKHQIEIASLAFVAAPRPTGFMRRARSFSHAQPFAQSSRSHRAWPANGPTMLLKWSPRPSDSFSATNGAPGSQTQSTAPFDTTGDSSSRRGMTGAMSVPALSAITAGNAGGDDRVSRARRLLGGIAGGAQDAFDTAASAIGCALVTHPLAKHLLTDDDGAGAYGGFQRSSRRRGRGTPGNLTLPASAVAHRRTPASTRVTSYDLVGFMDVDINRGLR 327
[Close]
BLAST of jgi.p|Trimin1|347339 vs. uniprot
Match: A0A836CID3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CID3_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.900e-23
Identity = 113/334 (33.83%), Postives = 148/334 (44.31%), Query Frame = 2 
Query:  152 RRIFAHYVLGRLGFLALLFFLCHPGTMATFNGKDYLTHRYPNRELAVAASEARLNGDTRRALRKCAVPWNIEQAARAASRAGAASSSSPAASKAKHQIEIASLAFVAAPRPTGFMRRARSFSHAQPFAQSSRSHRAWPANGPTMLLKWSPRPSDSFSATNGAPGSQTQSTAPFDTTGDSSSRRGMTGAMS---VPALSAITAGNAGGD-DR--------------------VSRARRLLGGIAGGAQDAFDTAASAIGCALVTHPLAKHLLTDDDGAGAYGGFQRSSRRRGRGTPGNLTLPASAVAHRRTPASTRVTSYDLVGFMDVDINRGLR 1081
            +RIFAHYVLG+LGFL +LFFLCHPG+ ATF  KDYL+ RYPN +L +A S     G    A ++           R  S  GAAS +  +  + +H +     AFVAAP   G    +  F+     A   + HR W    P    +     + + S+++    +   +  P      S+     T A S   V AL A++AG+ GG  DR                    + RAR  LGG+   AQD  D A   +G ALVTHPL K LL  +          RS                      R  A     +YDLVGFMDVDI+RG R
Sbjct:    8 KRIFAHYVLGKLGFLGILFFLCHPGSQATFCSKDYLSQRYPNLKL-LATSAGHDGGAASEATKRVLRCKREASCTRRKSTEGAASHTVGSV-RGRHSV-----AFVAAPS-LGTATCSSVFAARTNVA--FKPHRPWHTCRPVQDRRARMLFAGASSSSSXXAHALRAAAPPLRAXXCSTPTARTTDARSPAAVTALHAVSAGSGGGGGDRYDGCSYFRGDSGGSSPRRGALRRARGFLGGLRDSAQDVVDDAFGTVGHALVTHPLGKLLLPPEG--------PRSXXXXXXXXXXXXXXXXXXXTESRERARLTSAAYDLVGFMDVDIHRGFR 323
[Close]
BLAST of jgi.p|Trimin1|347339 vs. uniprot
Match: D7FS81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS81_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.010e-7
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 2 
Query:  137 AGRVRRRIFAHYVLGRLGFLALLFFLCHPGTMATFNGKDYLTHRYPNRELAVAASE 304
            AG  + R+F HYVLG++    +LFFLCHPGT+AT +G+ YL +RY NR+L    SE
Sbjct:    2 AGPTKERVFIHYVLGKM---LMLFFLCHPGTLATCDGQAYLRNRYANRDLVKTESE 54
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347339 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CPJ6_9STRA3.990e-225100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CID3_9STRA1.900e-2333.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FS81_ECTSI1.010e-753.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_10contigContig_10:1467992..1469360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347339|estExt_Genemark1.C_Ctg_100175
Hectar predicted targeting categorysignal peptide
TranscriptId347661
TrackFilteredModels1
ProteinId347339
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347339gene_4372Tribonema minus UTEX_B_3156 geneContig_10 1467992..1469360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347339Trimin1|347339|estExt_Genemark1.C_Ctg_100175Tribonema minus UTEX_B_3156 polypeptideContig_10 1467992..1469260 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4372_2exon_4372_2Tribonema minus UTEX_B_3156 exonContig_10 1467992..1468759 -
exon_4372_1exon_4372_1Tribonema minus UTEX_B_3156 exonContig_10 1469045..1469360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4372CDS_4372Tribonema minus UTEX_B_3156 CDSContig_10 1469045..1469260 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_4372UTR5_4372Tribonema minus UTEX_B_3156 five_prime_UTRContig_10 1469261..1469360 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4372 ID=mRNA_4372|Name=jgi.p|Trimin1|347339|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1084bp|location=Sequence derived from alignment at Contig_10:1467992..1469360- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCACTTTACTTACCGCACCAAGGCAACTGCTTACGTCAGGAGGACACAGA
CACAGGACACACTTTCAGTCGAACCACCCAGCACCTGAAACCGACAGCAC
ATGGGCCTTCTGCTTATACAGCAATGCGCTGACTTCGCGGGGCGCGTGAG
GCGGCGCATATTCGCGCACTACGTCCTCGGGCGCCTGGGTTTCCTGGCGC
TGCTCTTCTTCCTGTGCCATCCTGGCACGATGGCAACGTTCAACGGGAAA
GATTACCTCACGCACCGCTACCCGAACCGGGAGCTGGCCGTGGCGGCGTC
TGAGGCGAGGCTCAACGGTGATACCAGGCGTGCCCTGCGCAAGTGCGCGG
TGCCCTGGAACATTGAGCAGGCAGCTAGGGCGGCCTCTCGCGCTGGCGCT
GCTTCGAGCTCTTCCCCAGCCGCCTCCAAGGCGAAGCACCAGATTGAGAT
TGCTTCCCTCGCTTTCGTTGCGGCCCCACGCCCGACGGGGTTCATGAGGC
GGGCGCGGAGCTTCAGTCACGCGCAACCATTTGCGCAATCCTCGCGCAGC
CACCGTGCGTGGCCAGCGAATGGCCCGACCATGCTGCTGAAGTGGTCGCC
GCGTCCGTCGGATTCTTTCTCTGCCACCAACGGCGCTCCCGGGTCTCAAA
CACAGAGCACGGCGCCGTTCGACACCACCGGCGACAGCAGTTCCCGCCGC
GGCATGACGGGCGCAATGTCTGTGCCCGCACTCAGCGCGATCACGGCTGG
CAACGCCGGCGGCGATGACCGCGTATCCCGCGCGCGGCGGCTGCTAGGAG
GCATCGCCGGCGGCGCGCAGGACGCCTTCGACACTGCCGCCAGCGCCATA
GGCTGCGCGCTCGTCACGCACCCGCTCGCGAAGCACCTGCTGACGGACGA
CGACGGCGCCGGCGCGTACGGCGGCTTCCAGCGCAGCAGCCGCCGCCGCG
GCCGCGGAACTCCTGGAAACCTCACCCTGCCGGCGTCGGCGGTGGCGCAC
CGCCGCACTCCCGCCTCGACGCGCGTGACTAGCTACGACCTGGTCGGCTT
TATGGACGTCGACATTAACCGCGGGCTGCGCTGA
back to top

protein sequence of jgi.p|Trimin1|347339

>Trimin1|347339|estExt_Genemark1.C_Ctg_100175 ID=Trimin1|347339|estExt_Genemark1.C_Ctg_100175|Name=jgi.p|Trimin1|347339|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=328bp
MGLLLIQQCADFAGRVRRRIFAHYVLGRLGFLALLFFLCHPGTMATFNGK
DYLTHRYPNRELAVAASEARLNGDTRRALRKCAVPWNIEQAARAASRAGA
ASSSSPAASKAKHQIEIASLAFVAAPRPTGFMRRARSFSHAQPFAQSSRS
HRAWPANGPTMLLKWSPRPSDSFSATNGAPGSQTQSTAPFDTTGDSSSRR
GMTGAMSVPALSAITAGNAGGDDRVSRARRLLGGIAGGAQDAFDTAASAI
GCALVTHPLAKHLLTDDDGAGAYGGFQRSSRRRGRGTPGNLTLPASAVAH
RRTPASTRVTSYDLVGFMDVDINRGLR*
back to top

mRNA from alignment at Contig_10:1467992..1469360-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4372 ID=mRNA_4372|Name=jgi.p|Trimin1|347339|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1369bp|location=Sequence derived from alignment at Contig_10:1467992..1469360- (Tribonema minus UTEX_B_3156 )
GCACTTTACTTACCGCACCAAGGCAACTGCTTACGTCAGGAGGACACAGA
CACAGGACACACTTTCAGTCGAACCACCCAGCACCTGAAACCGACAGCAC
ATGGGCCTTCTGCTTATACAGCAATGCGCTGACTTCGCGGGGCGCGTGAG
GCGGCGCATATTCGCGCACTACGTCCTCGGGCGCCTGGGTTTCCTGGCGC
TGCTCTTCTTCCTGTGCCATCCTGGCACGATGGCAACGTTCAACGGGAAA
GATTACCTCACGCACCGCTACCCGAACCGGGAGCTGGCCGTGGCGGCGTC
TGAGGCGAGGCTCAACGTGAGTGAATCTGGCCATGCAGTAGCACCTGTGC
TAGGGCAGTTGTAGGCTCTTTGTTTCTCATGGTGATGATTCGTTGAAGCG
ACGTGTGCGTTTTCTGGCGTGGTTTCTAGACCGTCTCTTGACGCGGGCGG
CATGGCTGAGAAAACCATATCGTACGATGATACATGCCATCTCATGTCGG
CTGTACGTGCGGCCTTGCACGCATCGCCTGTCGCTTCATCATCTACGGCT
CATTGAGTTCTCTAACGACACTTTCGTTGTCTTATGCGATTGCGATCACA
GGGTGATACCAGGCGTGCCCTGCGCAAGTGCGCGGTGCCCTGGAACATTG
AGCAGGCAGCTAGGGCGGCCTCTCGCGCTGGCGCTGCTTCGAGCTCTTCC
CCAGCCGCCTCCAAGGCGAAGCACCAGATTGAGATTGCTTCCCTCGCTTT
CGTTGCGGCCCCACGCCCGACGGGGTTCATGAGGCGGGCGCGGAGCTTCA
GTCACGCGCAACCATTTGCGCAATCCTCGCGCAGCCACCGTGCGTGGCCA
GCGAATGGCCCGACCATGCTGCTGAAGTGGTCGCCGCGTCCGTCGGATTC
TTTCTCTGCCACCAACGGCGCTCCCGGGTCTCAAACACAGAGCACGGCGC
CGTTCGACACCACCGGCGACAGCAGTTCCCGCCGCGGCATGACGGGCGCA
ATGTCTGTGCCCGCACTCAGCGCGATCACGGCTGGCAACGCCGGCGGCGA
TGACCGCGTATCCCGCGCGCGGCGGCTGCTAGGAGGCATCGCCGGCGGCG
CGCAGGACGCCTTCGACACTGCCGCCAGCGCCATAGGCTGCGCGCTCGTC
ACGCACCCGCTCGCGAAGCACCTGCTGACGGACGACGACGGCGCCGGCGC
GTACGGCGGCTTCCAGCGCAGCAGCCGCCGCCGCGGCCGCGGAACTCCTG
GAAACCTCACCCTGCCGGCGTCGGCGGTGGCGCACCGCCGCACTCCCGCC
TCGACGCGCGTGACTAGCTACGACCTGGTCGGCTTTATGGACGTCGACAT
TAACCGCGGGCTGCGCTGA
back to top

Coding sequence (CDS) from alignment at Contig_10:1467992..1469360-

>mRNA_4372 ID=mRNA_4372|Name=jgi.p|Trimin1|347339|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=984bp|location=Sequence derived from alignment at Contig_10:1467992..1469360- (Tribonema minus UTEX_B_3156 )
ATGGGCCTTCTGCTTATACAGCAATGCGCTGACTTCGCGGGGCGCGTGAG
GCGGCGCATATTCGCGCACTACGTCCTCGGGCGCCTGGGTTTCCTGGCGC
TGCTCTTCTTCCTGTGCCATCCTGGCACGATGGCAACGTTCAACGGGAAA
GATTACCTCACGCACCGCTACCCGAACCGGGAGCTGGCCGTGGCGGCGTC
TGAGGCGAGGCTCAACGGTGATACCAGGCGTGCCCTGCGCAAGTGCGCGG
TGCCCTGGAACATTGAGCAGGCAGCTAGGGCGGCCTCTCGCGCTGGCGCT
GCTTCGAGCTCTTCCCCAGCCGCCTCCAAGGCGAAGCACCAGATTGAGAT
TGCTTCCCTCGCTTTCGTTGCGGCCCCACGCCCGACGGGGTTCATGAGGC
GGGCGCGGAGCTTCAGTCACGCGCAACCATTTGCGCAATCCTCGCGCAGC
CACCGTGCGTGGCCAGCGAATGGCCCGACCATGCTGCTGAAGTGGTCGCC
GCGTCCGTCGGATTCTTTCTCTGCCACCAACGGCGCTCCCGGGTCTCAAA
CACAGAGCACGGCGCCGTTCGACACCACCGGCGACAGCAGTTCCCGCCGC
GGCATGACGGGCGCAATGTCTGTGCCCGCACTCAGCGCGATCACGGCTGG
CAACGCCGGCGGCGATGACCGCGTATCCCGCGCGCGGCGGCTGCTAGGAG
GCATCGCCGGCGGCGCGCAGGACGCCTTCGACACTGCCGCCAGCGCCATA
GGCTGCGCGCTCGTCACGCACCCGCTCGCGAAGCACCTGCTGACGGACGA
CGACGGCGCCGGCGCGTACGGCGGCTTCCAGCGCAGCAGCCGCCGCCGCG
GCCGCGGAACTCCTGGAAACCTCACCCTGCCGGCGTCGGCGGTGGCGCAC
CGCCGCACTCCCGCCTCGACGCGCGTGACTAGCTACGACCTGGTCGGCTT
TATGGACGTCGACATTAACCGCGGGCTGCGCTGA
back to top