Trimin1|346747|estExt_Genemark1.C_Ctg_40231 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|346747
Unique NameTrimin1|346747|estExt_Genemark1.C_Ctg_40231
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length620
Homology
BLAST of jgi.p|Trimin1|346747 vs. uniprot
Match: A0A835YTP3_9STRA (PHD-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTP3_9STRA)

HSP 1 Score: 1069 bits (2764), Expect = 0.000e+0
Identity = 619/619 (100.00%), Postives = 619/619 (100.00%), Query Frame = 0
Query:    1 MPQDLDVDDPANPPPISISVDLSNLSSDSRRPGSLNSPMVSVASEELNAAEVSGAESLGQMSEAEEGLLANKWWDKTPPFISQEVVVPNRLNQEVCYVCRARGELLECAGPCCRSFHLPCCGAAAGTAATKAAVNWLCDECVMLHDALQLRGLSFIYRLVEDPKNFADFGADMMHTFHDLSLVTKEPLRQFALDRLEALAQRWKMRYQKLSDIQRGSRVSASDVMDAVMGIHALERIGITHSLKAETRKFVQQSDYMGLHDYLGLTEGDGEGGAGPCALAWAVTAAYFADGARVDLGATKAQLDVLPRLTEVRPYRLAVDMEFEAWADQMGLVFAVIHIASNFGELRLSPKLLPMEAYVIMHPSSMEVALKEGDVHILGQLGHCMRILGAKPGDAALERAAAALLRLQRLDGSWPARDDARPYSRFHAAAAAAAALAPPTFRGFGPGDPAVAALLQTLQPHAGIGATAGALQVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGAPARTQLCGCGILIAPEMGGLSAVAAEYVGSSHGHGGDLHLGLRERARRRLRALVRWRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARRSDPGRWGRLSRRAARKGLE 619
            MPQDLDVDDPANPPPISISVDLSNLSSDSRRPGSLNSPMVSVASEELNAAEVSGAESLGQMSEAEEGLLANKWWDKTPPFISQEVVVPNRLNQEVCYVCRARGELLECAGPCCRSFHLPCCGAAAGTAATKAAVNWLCDECVMLHDALQLRGLSFIYRLVEDPKNFADFGADMMHTFHDLSLVTKEPLRQFALDRLEALAQRWKMRYQKLSDIQRGSRVSASDVMDAVMGIHALERIGITHSLKAETRKFVQQSDYMGLHDYLGLTEGDGEGGAGPCALAWAVTAAYFADGARVDLGATKAQLDVLPRLTEVRPYRLAVDMEFEAWADQMGLVFAVIHIASNFGELRLSPKLLPMEAYVIMHPSSMEVALKEGDVHILGQLGHCMRILGAKPGDAALERAAAALLRLQRLDGSWPARDDARPYSRFHAAAAAAAALAPPTFRGFGPGDPAVAALLQTLQPHAGIGATAGALQVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGAPARTQLCGCGILIAPEMGGLSAVAAEYVGSSHGHGGDLHLGLRERARRRLRALVRWRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARRSDPGRWGRLSRRAARKGLE
Sbjct:    1 MPQDLDVDDPANPPPISISVDLSNLSSDSRRPGSLNSPMVSVASEELNAAEVSGAESLGQMSEAEEGLLANKWWDKTPPFISQEVVVPNRLNQEVCYVCRARGELLECAGPCCRSFHLPCCGAAAGTAATKAAVNWLCDECVMLHDALQLRGLSFIYRLVEDPKNFADFGADMMHTFHDLSLVTKEPLRQFALDRLEALAQRWKMRYQKLSDIQRGSRVSASDVMDAVMGIHALERIGITHSLKAETRKFVQQSDYMGLHDYLGLTEGDGEGGAGPCALAWAVTAAYFADGARVDLGATKAQLDVLPRLTEVRPYRLAVDMEFEAWADQMGLVFAVIHIASNFGELRLSPKLLPMEAYVIMHPSSMEVALKEGDVHILGQLGHCMRILGAKPGDAALERAAAALLRLQRLDGSWPARDDARPYSRFHAAAAAAAALAPPTFRGFGPGDPAVAALLQTLQPHAGIGATAGALQVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGAPARTQLCGCGILIAPEMGGLSAVAAEYVGSSHGHGGDLHLGLRERARRRLRALVRWRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARRSDPGRWGRLSRRAARKGLE 619          
BLAST of jgi.p|Trimin1|346747 vs. uniprot
Match: A0A7S4DH73_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DH73_HETAK)

HSP 1 Score: 193 bits (490), Expect = 8.850e-54
Identity = 107/240 (44.58%), Postives = 149/240 (62.08%), Query Frame = 0
Query:  176 TFHDLSLVTKEPLRQFALDRLEALAQRWKMRYQKLSDIQRGSRVSASDVMDAVMGIHALERIGITHSLKAETRKFVQQSDYMGLHDYLGLTEGDGEGGAGP-----CALAWAVTAAYFADGARVDLGATKAQLDVLPRLTEVRPYR---------------------LAVDMEFEAWADQMGLVFAVIHIASNFGELRLSPKLLPMEAYVIMHPSSMEVALKEGDVHILGQLGHCMRILG 389
            TF+D++ V  EPLRQ+AL R+EALAQ WK RY+ L+D+  G R   S+V DA++GI+ALER+GITH+LK E RKFVQ++ Y    DY G    DG     P      A   A+  A++AD   +DLGA+   LD+L  L  +RPYR                       ++ ++E W DQ  ++F +IH+ SNFGELRL PKL+P EA  +++P  M+V L+E DVH++G+L HC+R+LG
Sbjct:    2 TFYDVAAVAPEPLRQYALHRVEALAQWWKERYRSLTDLGTGPRPEPSEVTDAILGIYALERVGITHTLKMEARKFVQEAKYTAA-DYFGFQPKDGPLSCEPEMNRYRAFTTAIVNAFYADKVGIDLGASL--LDILAHLPSLRPYRPEPKRAKGDSXXXXXXXXXXXXXLEDQWEEWLDQTTMLFNLIHVCSNFGELRLDPKLVPEEAEYLLNPQLMDVCLREKDVHLVGELCHCLRVLG 238          
BLAST of jgi.p|Trimin1|346747 vs. uniprot
Match: A0A7S2R9I0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9I0_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.440e-36
Identity = 103/283 (36.40%), Postives = 156/283 (55.12%), Query Frame = 0
Query:  186 EPLRQFALDRLEALAQRWKMRYQKLSDIQRGSRVSASDVMDAVMGIHALERIGITHSLKAETRKFV-QQSDYMGLHDYLGLTEGD-GEG----GAGPCALAWAVTAAYFADGARVDLG---------ATKAQLDVLPRLTEVRPYRLAVDMEFEAWADQMGLVFAVIHIASNFGELRLSPKLLPMEAYVIMHPSSMEVALKEGDVHILGQLGHCMRILGAKPGDAALERAAAALLRLQ-RLDGSWPAR-----DDARPYSRFHAAAAAAAALAPPTFRGFGPG 447
            +P+R+ AL R+E L+Q WK R++ L D   G    AS+++D    ++ALER+G+ H LK E  +F+ + S      D++G +    GEG     A P  L  A+   Y A    +D+G          T+ +  V+P  T+   Y        + W D + L+F V+HI SN+GEL L P LLP E   + + +++++A+++ DVHI+G+L HC+R+ G + GD  L+     +++ Q   DGSWP R     DD   Y+R+HAA  A  AL  P FRGFGPG
Sbjct:    3 DPVRREALQRVEYLSQLWKRRFRTLRD-HAGDDPRASELVDVATALYALERVGLEHPLKQEAAQFIARHSPPFRAMDFIGFSPSSPGEGFFSDPASPSKLVMAMNLGYAAGQVGLDVGFKLSDVMRLCTRVRRLVVPDATDPGSYT-------QRWIDNITLIFNVVHIFSNYGELALRPSLLPDEYKYLRNRANLDLAVRQQDVHIVGELCHCLRVFGVESGDPVLDAGVQFIVKHQVPEDGSWPTRGGSGNDD---YTRYHAAMCATMALYDPVFRGFGPG 274          
BLAST of jgi.p|Trimin1|346747 vs. uniprot
Match: F0XZU3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZU3_AURAN)

HSP 1 Score: 146 bits (369), Expect = 7.620e-33
Identity = 114/333 (34.23%), Postives = 175/333 (52.55%), Query Frame = 0
Query:  150 LRGLSFIYRLVEDPKNFADFGADMMHTFHDLSLVTKEPLRQFALDRLEALAQRWKMRYQKLSDIQRGSRVSAS------DVMDAVMGIHALERIGIT-HSLKAETRKFVQ-QSDYM-----------GLHDYLGLTEGDGEGG---------AGPCA-----LAWAVTAAYFADGARVDLGATKAQLDVLPRLTEVRPYRLAVDMEFEAWADQMGLVFAVIHIASNFGELRLSPKLLPME-AYVIMHPSSMEVALKEGDVHILGQLGHCMRILGAKPGDAALERAAAALLRLQ-RLDGSWPARDDARPYSRFHAAAAAAAALAPPTFRGFGPG 447
            L GL  I+ +  + KNF  FG DM+  F D++ VT +P+R  AL  +E LAQRW+        + RG R SA+      ++++ V+GI+ +ER+G++ H LK + ++ V    +Y            G  DYLG       GG         +G  A     L  ++  +Y+A+ A VD+G   A+  VL  L  +RPYR   D+ ++A+ DQ  LV  V+   +N+GEL L P LLP E A++  H   + +A++E DVH++G+   C+R  GA   DA+++     LL  Q +    W    DA  Y+ +HA   A+ AL   +FRG+GPG
Sbjct:  188 LNGLDAIFAMATEEKNFEHFGNDMVQCFFDVATVTGDPVRSRALMYVEQLAQRWRH-----GVVARGWRHSATLRPSPQNILETVVGIYCMERVGVSSHKLKEDVKRAVDCAGEYAAPDGEPPLLPYGPVDYLGWDPARCPGGPPDDVPEVLSGETASKYRTLCNSLIHSYYAERASVDIGCAYAE--VLAHLRTLRPYRGPADLPWDAYVDQCYLVTHVVFTLNNWGELALEPDLLPHEHAFIKEH---IGIAIRERDVHLVGEYVECLRCFGATDADASVQLGITFLLNAQDQATHRWDVDMDA--YTSYHATMVASQALLAHSFRGYGPG 508          
BLAST of jgi.p|Trimin1|346747 vs. uniprot
Match: A0A7S2DPH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPH7_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.510e-26
Identity = 94/312 (30.13%), Postives = 156/312 (50.00%), Query Frame = 0
Query:  150 LRGLSFIYRLVEDPKNFADFGADMMHTFHDLSLVTKEPLRQFALDRLEALAQRWKMRYQKLSDIQRGSRVSASDVMDAVMGIHALERIGITHSLKAETRKFVQQS-------DYMGLHDYLGLTEGD------GEGGAGPCALAWAVTAAYFADGARVDLGATKAQLDVLPRLTEVRPYRLAVDM-EFEAWADQMGLVFAVIHIASNFGELRLSPKLLPMEAYVIMHPSSMEVALKEGDVHILGQLGHCMRILGAKPGDAALERAAAALLRLQRLDGSWPARDDARPYSRFHAAAAAAAALAPPTFRGFGPG 447
            LRGL  I+ + +D +NF  FG DM+  F+D++ VT EP+R  AL   E LA RWK     +   + G   +  +V+D ++G++ +ER+GI H +K+E   F+ Q        DY+G +  LG    +      G+  +    ++ ++   ++A+   VDLG +    DVL  L   RP+    D+ +   + DQ  LV  V+   +N+GEL L   + P E +   +  S ++  +  DVH++G+    +R    +  D  ++     L+  Q  +G W A D    Y+ +HA      AL   ++RGFGPG
Sbjct:  191 LRGLDRIFSMAQDEENFTLFGNDMIQCFYDVATVTGEPIRARALKYTEQLAHRWKHSVM-VQGWKCGEVPTPQEVIDVLIGMYCMERVGIHHEMKSEVEAFMAQKPPVYSIVDYLGWNPKLGPPPDNLPDVLSGQEVSVYRTMSNSLIHTFYAERVGVDLGCSYK--DVLKHLPRFRPWLGPQDLSQANLYTDQCYLVTHVVFTLNNWGELSLERDVAPHEYFFARNHLSTQIGKR--DVHLVGEFIEVLRAFNVQDSDLLIQAGLKFLMATQDDEGLWDA-DAEEAYTTYHATMVGIQALLAHSYRGFGPG 496          
BLAST of jgi.p|Trimin1|346747 vs. uniprot
Match: A0A835ZEN8_9STRA (TFIIS N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEN8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.200e-6
Identity = 42/136 (30.88%), Postives = 64/136 (47.06%), Query Frame = 0
Query:  150 LRGLSFIYRLVEDPKNFADFGADMMHTFHDLSLVTKEPLRQFALDRLEALAQRWKMRYQKLSDIQ---------------------RGSRVSASDVMDAVMGIHALERIGITHSLKAETRKFVQQSDYMGLHDYLG 264
            LRGL  I+ + +   NF  FG D++  F+D++  T EP+R  AL  +E LAQRWK   +     Q                      G   +A +++DA++ ++ LER+GI   +K E    +   D     DYLG
Sbjct:  200 LRGLDKIFSMAQSEDNFTLFGNDIIQCFYDVASATGEPVRARALMYVEQLAQRWKTTVRHAGWRQSPRSASHSVAAAREPCCTTRVEGDTATAPEIIDAIVAMYCLERVGIHDDVKVEVEAAL---DAYTAKDYLG 332          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346747 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YTP3_9STRA0.000e+0100.00PHD-type domain-containing protein n=1 Tax=Tribone... [more]
A0A7S4DH73_HETAK8.850e-5444.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2R9I0_9STRA1.440e-3636.40Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0XZU3_AURAN7.620e-3334.23Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2DPH7_9STRA1.510e-2630.13Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A835ZEN8_9STRA1.200e-630.88TFIIS N-terminal domain-containing protein n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 193..213
NoneNo IPR availableGENE3D1.50.10.20coord: 349..501
e-value: 9.2E-6
score: 26.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 604..619
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 475..496
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 582..619
NoneNo IPR availablePANTHERPTHR45616:SF22SUBFAMILY NOT NAMEDcoord: 79..553
NoneNo IPR availablePANTHERPTHR45616FAMILY NOT NAMEDcoord: 79..553
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 95..142
e-value: 2.0E-4
score: 30.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 85..158
e-value: 1.6E-7
score: 33.3
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 96..141
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 93..144
score: 8.9738
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidSUPERFAMILY48239Terpenoid cyclases/Protein prenyltransferasescoord: 369..462
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 91..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:1994088..2000395 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346747mRNA_1774Tribonema minus UTEX_B_3156 mRNAContig_4 1994088..2000591 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|346747|estExt_Genemark1.C_Ctg_40231 ID=Trimin1|346747|estExt_Genemark1.C_Ctg_40231|Name=jgi.p|Trimin1|346747|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=620bp
MPQDLDVDDPANPPPISISVDLSNLSSDSRRPGSLNSPMVSVASEELNAA
EVSGAESLGQMSEAEEGLLANKWWDKTPPFISQEVVVPNRLNQEVCYVCR
ARGELLECAGPCCRSFHLPCCGAAAGTAATKAAVNWLCDECVMLHDALQL
RGLSFIYRLVEDPKNFADFGADMMHTFHDLSLVTKEPLRQFALDRLEALA
QRWKMRYQKLSDIQRGSRVSASDVMDAVMGIHALERIGITHSLKAETRKF
VQQSDYMGLHDYLGLTEGDGEGGAGPCALAWAVTAAYFADGARVDLGATK
AQLDVLPRLTEVRPYRLAVDMEFEAWADQMGLVFAVIHIASNFGELRLSP
KLLPMEAYVIMHPSSMEVALKEGDVHILGQLGHCMRILGAKPGDAALERA
AAALLRLQRLDGSWPARDDARPYSRFHAAAAAAAALAPPTFRGFGPGDPA
VAALLQTLQPHAGIGATAGALQVDGGGGGRGGGGRASANSGSSGGGSMSS
GGGGACGAPARTQLCGCGILIAPEMGGLSAVAAEYVGSSHGHGGDLHLGL
RERARRRLRALVRWRQQQEAAAAAAAVGGFGGDGSGGGGGAGGGGGVARR
SDPGRWGRLSRRAARKGLE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR008930Terpenoid_cyclase/PrenylTrfase
IPR011011Znf_FYVE_PHD