mRNA_1774 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|346747
Unique Name	mRNA_1774
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|346747 vs. uniprot
Match: A0A835YTP3_9STRA (PHD-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTP3_9STRA)

HSP 1 Score: 1069 bits (2764), Expect = 0.000e+0
Identity = 619/619 (100.00%), Postives = 619/619 (100.00%), Query Frame = 1

Query:    1 MPQDLDVDDPANPPPISISVDLSNLSSDSRRPGSLNSPMVSVASEELNAAEVSGAESLGQMSEAEEGLLANKWWDKTPPFISQEVVVPNRLNQEVCYVCRARGELLECAGPCCRSFHLPCCGAAAGTAATKAAVNWLCDECVMLHDALQLRGLSFIYRLVEDPKNFADFGADMMHTFHDLSLVTKEPLRQFALDRLEALAQRWKMRYQKLSDIQRGSRVSASDVMDAVMGIHALERIGITHSLKAETRKFVQQSDYMGLHDYLGLTEGDGEGGAGPCALAWAVTAAYFADGARVDLGATKAQLDVLPRLTEVRPYRLAVDMEFEAWADQMGLVFAVIHIASNFGELRLSPKLLPMEAYVIMHPSSMEVALKEGDVHILGQLGHCMRILGAKPGDAALERAAAALLRLQRLDGSWPARDDARPYSRFHAAAAAAAALAPPTFRGFGPGDPAVAALLQTLQPHAGIGATAGALQVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGAPARTQLCGCGILIAPEMGGLSAVAAEYVGSSHGHGGDLHLGLRERARRRLRALVRWRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARRSDPGRWGRLSRRAARKGLE 1857
            MPQDLDVDDPANPPPISISVDLSNLSSDSRRPGSLNSPMVSVASEELNAAEVSGAESLGQMSEAEEGLLANKWWDKTPPFISQEVVVPNRLNQEVCYVCRARGELLECAGPCCRSFHLPCCGAAAGTAATKAAVNWLCDECVMLHDALQLRGLSFIYRLVEDPKNFADFGADMMHTFHDLSLVTKEPLRQFALDRLEALAQRWKMRYQKLSDIQRGSRVSASDVMDAVMGIHALERIGITHSLKAETRKFVQQSDYMGLHDYLGLTEGDGEGGAGPCALAWAVTAAYFADGARVDLGATKAQLDVLPRLTEVRPYRLAVDMEFEAWADQMGLVFAVIHIASNFGELRLSPKLLPMEAYVIMHPSSMEVALKEGDVHILGQLGHCMRILGAKPGDAALERAAAALLRLQRLDGSWPARDDARPYSRFHAAAAAAAALAPPTFRGFGPGDPAVAALLQTLQPHAGIGATAGALQVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGAPARTQLCGCGILIAPEMGGLSAVAAEYVGSSHGHGGDLHLGLRERARRRLRALVRWRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARRSDPGRWGRLSRRAARKGLE
Sbjct:    1 MPQDLDVDDPANPPPISISVDLSNLSSDSRRPGSLNSPMVSVASEELNAAEVSGAESLGQMSEAEEGLLANKWWDKTPPFISQEVVVPNRLNQEVCYVCRARGELLECAGPCCRSFHLPCCGAAAGTAATKAAVNWLCDECVMLHDALQLRGLSFIYRLVEDPKNFADFGADMMHTFHDLSLVTKEPLRQFALDRLEALAQRWKMRYQKLSDIQRGSRVSASDVMDAVMGIHALERIGITHSLKAETRKFVQQSDYMGLHDYLGLTEGDGEGGAGPCALAWAVTAAYFADGARVDLGATKAQLDVLPRLTEVRPYRLAVDMEFEAWADQMGLVFAVIHIASNFGELRLSPKLLPMEAYVIMHPSSMEVALKEGDVHILGQLGHCMRILGAKPGDAALERAAAALLRLQRLDGSWPARDDARPYSRFHAAAAAAAALAPPTFRGFGPGDPAVAALLQTLQPHAGIGATAGALQVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGAPARTQLCGCGILIAPEMGGLSAVAAEYVGSSHGHGGDLHLGLRERARRRLRALVRWRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARRSDPGRWGRLSRRAARKGLE 619

[Close]

BLAST of jgi.p|Trimin1|346747 vs. uniprot
Match: A0A7S4DH73_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DH73_HETAK)

HSP 1 Score: 193 bits (490), Expect = 2.440e-53
Identity = 107/240 (44.58%), Postives = 149/240 (62.08%), Query Frame = 1

Query:  526 TFHDLSLVTKEPLRQFALDRLEALAQRWKMRYQKLSDIQRGSRVSASDVMDAVMGIHALERIGITHSLKAETRKFVQQSDYMGLHDYLGLTEGDGEGGAGP-----CALAWAVTAAYFADGARVDLGATKAQLDVLPRLTEVRPYR---------------------LAVDMEFEAWADQMGLVFAVIHIASNFGELRLSPKLLPMEAYVIMHPSSMEVALKEGDVHILGQLGHCMRILG 1167
            TF+D++ V  EPLRQ+AL R+EALAQ WK RY+ L+D+  G R   S+V DA++GI+ALER+GITH+LK E RKFVQ++ Y    DY G    DG     P      A   A+  A++AD   +DLGA+   LD+L  L  +RPYR                       ++ ++E W DQ  ++F +IH+ SNFGELRL PKL+P EA  +++P  M+V L+E DVH++G+L HC+R+LG
Sbjct:    2 TFYDVAAVAPEPLRQYALHRVEALAQWWKERYRSLTDLGTGPRPEPSEVTDAILGIYALERVGITHTLKMEARKFVQEAKYTAA-DYFGFQPKDGPLSCEPEMNRYRAFTTAIVNAFYADKVGIDLGASL--LDILAHLPSLRPYRPEPKRAKGDSXXXXXXXXXXXXXLEDQWEEWLDQTTMLFNLIHVCSNFGELRLDPKLVPEEAEYLLNPQLMDVCLREKDVHLVGELCHCLRVLG 238

[Close]

BLAST of jgi.p|Trimin1|346747 vs. uniprot
Match: A0A7S2R9I0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9I0_9STRA)

HSP 1 Score: 154 bits (390), Expect = 2.740e-36
Identity = 103/283 (36.40%), Postives = 156/283 (55.12%), Query Frame = 1

Query:  556 EPLRQFALDRLEALAQRWKMRYQKLSDIQRGSRVSASDVMDAVMGIHALERIGITHSLKAETRKFV-QQSDYMGLHDYLGLTEGD-GEG----GAGPCALAWAVTAAYFADGARVDLG---------ATKAQLDVLPRLTEVRPYRLAVDMEFEAWADQMGLVFAVIHIASNFGELRLSPKLLPMEAYVIMHPSSMEVALKEGDVHILGQLGHCMRILGAKPGDAALERAAAALLRLQ-RLDGSWPAR-----DDARPYSRFHAAAAAAAALAPPTFRGFGPG 1341
            +P+R+ AL R+E L+Q WK R++ L D   G    AS+++D    ++ALER+G+ H LK E  +F+ + S      D++G +    GEG     A P  L  A+   Y A    +D+G          T+ +  V+P  T+   Y        + W D + L+F V+HI SN+GEL L P LLP E   + + +++++A+++ DVHI+G+L HC+R+ G + GD  L+     +++ Q   DGSWP R     DD   Y+R+HAA  A  AL  P FRGFGPG
Sbjct:    3 DPVRREALQRVEYLSQLWKRRFRTLRD-HAGDDPRASELVDVATALYALERVGLEHPLKQEAAQFIARHSPPFRAMDFIGFSPSSPGEGFFSDPASPSKLVMAMNLGYAAGQVGLDVGFKLSDVMRLCTRVRRLVVPDATDPGSYT-------QRWIDNITLIFNVVHIFSNYGELALRPSLLPDEYKYLRNRANLDLAVRQQDVHIVGELCHCLRVFGVESGDPVLDAGVQFIVKHQVPEDGSWPTRGGSGNDD---YTRYHAAMCATMALYDPVFRGFGPG 274

[Close]

BLAST of jgi.p|Trimin1|346747 vs. uniprot
Match: F0XZU3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZU3_AURAN)

HSP 1 Score: 146 bits (369), Expect = 1.550e-32
Identity = 114/333 (34.23%), Postives = 175/333 (52.55%), Query Frame = 1

Query:  448 LRGLSFIYRLVEDPKNFADFGADMMHTFHDLSLVTKEPLRQFALDRLEALAQRWKMRYQKLSDIQRGSRVSAS------DVMDAVMGIHALERIGIT-HSLKAETRKFVQ-QSDYM-----------GLHDYLGLTEGDGEGG---------AGPCA-----LAWAVTAAYFADGARVDLGATKAQLDVLPRLTEVRPYRLAVDMEFEAWADQMGLVFAVIHIASNFGELRLSPKLLPME-AYVIMHPSSMEVALKEGDVHILGQLGHCMRILGAKPGDAALERAAAALLRLQ-RLDGSWPARDDARPYSRFHAAAAAAAALAPPTFRGFGPG 1341
            L GL  I+ +  + KNF  FG DM+  F D++ VT +P+R  AL  +E LAQRW+        + RG R SA+      ++++ V+GI+ +ER+G++ H LK + ++ V    +Y            G  DYLG       GG         +G  A     L  ++  +Y+A+ A VD+G   A+  VL  L  +RPYR   D+ ++A+ DQ  LV  V+   +N+GEL L P LLP E A++  H   + +A++E DVH++G+   C+R  GA   DA+++     LL  Q +    W    DA  Y+ +HA   A+ AL   +FRG+GPG
Sbjct:  188 LNGLDAIFAMATEEKNFEHFGNDMVQCFFDVATVTGDPVRSRALMYVEQLAQRWRH-----GVVARGWRHSATLRPSPQNILETVVGIYCMERVGVSSHKLKEDVKRAVDCAGEYAAPDGEPPLLPYGPVDYLGWDPARCPGGPPDDVPEVLSGETASKYRTLCNSLIHSYYAERASVDIGCAYAE--VLAHLRTLRPYRGPADLPWDAYVDQCYLVTHVVFTLNNWGELALEPDLLPHEHAFIKEH---IGIAIRERDVHLVGEYVECLRCFGATDADASVQLGITFLLNAQDQATHRWDVDMDA--YTSYHATMVASQALLAHSFRGYGPG 508

[Close]

BLAST of jgi.p|Trimin1|346747 vs. uniprot
Match: A0A7S2DPH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPH7_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.260e-26
Identity = 94/312 (30.13%), Postives = 156/312 (50.00%), Query Frame = 1

Query:  448 LRGLSFIYRLVEDPKNFADFGADMMHTFHDLSLVTKEPLRQFALDRLEALAQRWKMRYQKLSDIQRGSRVSASDVMDAVMGIHALERIGITHSLKAETRKFVQQS-------DYMGLHDYLGLTEGD------GEGGAGPCALAWAVTAAYFADGARVDLGATKAQLDVLPRLTEVRPYRLAVDM-EFEAWADQMGLVFAVIHIASNFGELRLSPKLLPMEAYVIMHPSSMEVALKEGDVHILGQLGHCMRILGAKPGDAALERAAAALLRLQRLDGSWPARDDARPYSRFHAAAAAAAALAPPTFRGFGPG 1341
            LRGL  I+ + +D +NF  FG DM+  F+D++ VT EP+R  AL   E LA RWK     +   + G   +  +V+D ++G++ +ER+GI H +K+E   F+ Q        DY+G +  LG    +      G+  +    ++ ++   ++A+   VDLG +    DVL  L   RP+    D+ +   + DQ  LV  V+   +N+GEL L   + P E +   +  S ++  +  DVH++G+    +R    +  D  ++     L+  Q  +G W A D    Y+ +HA      AL   ++RGFGPG
Sbjct:  191 LRGLDRIFSMAQDEENFTLFGNDMIQCFYDVATVTGEPIRARALKYTEQLAHRWKHSVM-VQGWKCGEVPTPQEVIDVLIGMYCMERVGIHHEMKSEVEAFMAQKPPVYSIVDYLGWNPKLGPPPDNLPDVLSGQEVSVYRTMSNSLIHTFYAERVGVDLGCSYK--DVLKHLPRFRPWLGPQDLSQANLYTDQCYLVTHVVFTLNNWGELSLERDVAPHEYFFARNHLSTQIGKR--DVHLVGEFIEVLRAFNVQDSDLLIQAGLKFLMATQDDEGLWDA-DAEEAYTTYHATMVGIQALLAHSYRGFGPG 496

[Close]

BLAST of jgi.p|Trimin1|346747 vs. uniprot
Match: A0A835ZEN8_9STRA (TFIIS N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEN8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.410e-6
Identity = 42/136 (30.88%), Postives = 64/136 (47.06%), Query Frame = 1

Query:  448 LRGLSFIYRLVEDPKNFADFGADMMHTFHDLSLVTKEPLRQFALDRLEALAQRWKMRYQKLSDIQ---------------------RGSRVSASDVMDAVMGIHALERIGITHSLKAETRKFVQQSDYMGLHDYLG 792
            LRGL  I+ + +   NF  FG D++  F+D++  T EP+R  AL  +E LAQRWK   +     Q                      G   +A +++DA++ ++ LER+GI   +K E    +   D     DYLG
Sbjct:  200 LRGLDKIFSMAQSEDNFTLFGNDIIQCFYDVASATGEPVRARALMYVEQLAQRWKTTVRHAGWRQSPRSASHSVAAAREPCCTTRVEGDTATAPEIIDAIVAMYCLERVGIHDDVKVEVEAAL---DAYTAKDYLG 332

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|346747 vs. uniprot

BLAST of jgi.p|Trimin1|346747 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6


Match Name	E-value	Identity	Description
A0A835YTP3_9STRA	0.000e+0	100.00	PHD-type domain-containing protein n=1 Tax=Tribone...	[more]
A0A7S4DH73_HETAK	2.440e-53	44.58	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A7S2R9I0_9STRA	2.740e-36	36.40	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
F0XZU3_AURAN	1.550e-32	34.23	Uncharacterized protein n=1 Tax=Aureococcus anopha...	[more]
A0A7S2DPH7_9STRA	2.260e-26	30.13	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]
A0A835ZEN8_9STRA	1.410e-6	30.88	TFIIS N-terminal domain-containing protein n=1 Tax...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_4	contig	Contig_4:1994088..2000591 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|346747\|estExt_Genemark1.C_Ctg_40231
KEGG TC	2.A.18.8
BRITE	ko00000,ko00001,ko01001,ko02000,ko04131
KEGG Pathway	ko04138,map04138
KEGG ko	ko:K08869,ko:K14209
Description	amino acid transmembrane transporter activity
COG category	E
Max annot lvl	2759\|Eukaryota
EggNOG OGs	COG0661@1\|root,COG0814@1\|root,KOG1235@2759\|Eukaryota,KOG1304@2759\|Eukaryota
Evalue	1.25e-33
Seed ortholog	44056.XP_009033911.1
Hectar predicted targeting category	other localisation
TranscriptId	347069
Track	FilteredModels1
ProteinId	346747

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|346747	gene_1774	Tribonema minus UTEX_B_3156	gene	Contig_4 1994088..2000591 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|346747	Trimin1\|346747\|estExt_Genemark1.C_Ctg_40231	Tribonema minus UTEX_B_3156	polypeptide	Contig_4 1994088..2000395 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_1774_1	exon_1774_1	Tribonema minus UTEX_B_3156	exon	Contig_4 1994088..1994240 +
exon_1774_2	exon_1774_2	Tribonema minus UTEX_B_3156	exon	Contig_4 1994801..1994929 +
exon_1774_3	exon_1774_3	Tribonema minus UTEX_B_3156	exon	Contig_4 1995184..1995353 +
exon_1774_4	exon_1774_4	Tribonema minus UTEX_B_3156	exon	Contig_4 1995860..1995929 +
exon_1774_5	exon_1774_5	Tribonema minus UTEX_B_3156	exon	Contig_4 1996365..1996497 +
exon_1774_6	exon_1774_6	Tribonema minus UTEX_B_3156	exon	Contig_4 1996857..1996947 +
exon_1774_7	exon_1774_7	Tribonema minus UTEX_B_3156	exon	Contig_4 1997831..1998071 +
exon_1774_8	exon_1774_8	Tribonema minus UTEX_B_3156	exon	Contig_4 1998662..1998756 +
exon_1774_9	exon_1774_9	Tribonema minus UTEX_B_3156	exon	Contig_4 1999142..1999202 +
exon_1774_10	exon_1774_10	Tribonema minus UTEX_B_3156	exon	Contig_4 1999679..2000591 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_1774	CDS_1774	Tribonema minus UTEX_B_3156	CDS	Contig_4 1994088..1994240 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_1774	UTR3_1774	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_4 2000396..2000591 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_4:1994088..2000591+
coding sequence from alignment at Contig_4:1994088..2000591+

spliced messenger RNA

>mRNA_1774 ID=mRNA_1774|Name=jgi.p|Trimin1|346747|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2056bp|location=Sequence derived from alignment at Contig_4:1994088..2000591+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCAAGATCTCGATGTCGACGATCCAGCCAATCCGCCGCCCATATC
CATATCGGTGGATCTCAGCAACCTCAGCAGCGACAGCAGGAGGCCAGGAT
CGCTAAATTCGCCTATGGTGTCCGTGGCTTCAGAGGAGCTGAATGCTGCT
GAGGTGTCTGGAGCGGAGTCCCTGGGGCAGATGTCTGAGGCAGAGGAAGG
CTTGTTGGCCAACAAATGGTGGGACAAGACACCACCGTTCATATCTCAGG
AAGTGGTGGTTCCAAACCGGCTTAACCAAGAGGTCTGCTACGTCTGCAGG
GCGCGTGGCGAGCTGCTGGAGTGTGCAGGCCCCTGCTGTCGCTCCTTCCA
CCTGCCGTGCTGCGGCGCGGCCGCCGGAACTGCTGCCACCAAGGCCGCTG
TGAACTGGCTGTGCGACGAGTGCGTGATGCTGCACGACGCGCTTCAGCTC
AGAGGGCTGAGCTTCATCTACCGGCTGGTCGAAGACCCCAAGAACTTTGC
AGATTTCGGGGCCGACATGATGCACACATTCCACGACCTTTCGCTGGTCA
CGAAAGAGCCTCTGCGACAATTTGCACTGGATCGCCTGGAGGCGCTGGCG
CAGCGCTGGAAGATGCGATATCAGAAGCTCAGCGACATACAGCGTGGTTC
AAGAGTTTCTGCAAGTGACGTAATGGATGCGGTGATGGGCATACATGCGC
TGGAGCGCATTGGCATCACACACTCCCTCAAGGCGGAGACCCGCAAGTTC
GTCCAACAAAGCGACTACATGGGTCTGCACGACTATCTAGGGCTCACTGA
GGGCGACGGGGAGGGGGGTGCGGGCCCCTGCGCCCTGGCTTGGGCAGTCA
CGGCAGCGTACTTTGCAGATGGCGCGCGCGTGGATCTGGGCGCCACAAAA
GCACAATTAGACGTGCTGCCACGGCTGACCGAGGTGCGGCCGTACAGGCT
GGCGGTGGACATGGAGTTTGAAGCTTGGGCAGACCAGATGGGGCTGGTGT
TTGCAGTTATACACATAGCATCAAATTTTGGCGAGCTTCGCCTGTCGCCC
AAGCTGCTGCCCATGGAGGCATACGTTATCATGCACCCGTCCAGCATGGA
GGTGGCACTCAAGGAAGGCGACGTGCACATCCTGGGACAGCTGGGTCACT
GCATGCGCATCCTGGGCGCCAAACCCGGCGACGCGGCGCTGGAGCGCGCC
GCCGCTGCGCTGCTGCGCCTGCAGCGCCTGGACGGCTCGTGGCCCGCGCG
CGACGACGCGCGCCCCTACTCGCGCTTCCACGCCGCCGCCGCCGCCGCCG
CCGCCCTCGCGCCGCCGACGTTCCGCGGCTTCGGCCCGGGCGACCCCGCC
GTGGCGGCGCTGCTGCAGACGCTGCAGCCGCACGCTGGCATCGGCGCAAC
TGCCGGCGCGCTTCAGGTGGACGGCGGCGGCGGCGGGCGCGGCGGCGGCG
GGCGCGCCAGCGCCAACAGCGGCAGCAGCGGCGGCGGCAGCATGAGCAGC
GGCGGCGGCGGCGCGTGCGGCGCGCCCGCGCGCACGCAGCTGTGCGGCTG
CGGCATCCTCATCGCGCCGGAGATGGGGGGCCTGTCCGCCGTCGCGGCGG
AGTACGTCGGCAGCAGCCACGGGCACGGCGGCGATCTGCACCTGGGCCTG
CGAGAGCGCGCGCGGCGCAGGCTCAGGGCCCTCGTGCGGTGGCGCCAGCA
GCAGGAGGCGGCGGCGGCGGCGGCGGCGGTGGGCGGCTTTGGCGGCGACG
GCAGCGGCGGCGGCGGCGGCGCAGGGGGTGGCGGCGGCGTTGCGCGGCGG
TCAGACCCTGGGAGATGGGGGAGGCTGTCGAGGCGTGCTGCGCGCAAAGG
ACTGGAATAGGAGCGCTGCTGCCTGGCGTGCGCGATGTGTATGTTGTTTG
TGTTTGTCGGTTACTAGTTACAGCCCATGGTGCTCCAAACAACGGACCGT
TGTGTGGGTGGGCACATGACCTCAAATTCCGCCGAGCTCGCTCATCTGAT
GCTTGCGGCTGTGTTCAGTAGTATTGCAACAACCATACATGCAACATCAA
GTTCAG

protein sequence of jgi.p|Trimin1|346747

>Trimin1|346747|estExt_Genemark1.C_Ctg_40231 ID=Trimin1|346747|estExt_Genemark1.C_Ctg_40231|Name=jgi.p|Trimin1|346747|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=620bp
MPQDLDVDDPANPPPISISVDLSNLSSDSRRPGSLNSPMVSVASEELNAA
EVSGAESLGQMSEAEEGLLANKWWDKTPPFISQEVVVPNRLNQEVCYVCR
ARGELLECAGPCCRSFHLPCCGAAAGTAATKAAVNWLCDECVMLHDALQL
RGLSFIYRLVEDPKNFADFGADMMHTFHDLSLVTKEPLRQFALDRLEALA
QRWKMRYQKLSDIQRGSRVSASDVMDAVMGIHALERIGITHSLKAETRKF
VQQSDYMGLHDYLGLTEGDGEGGAGPCALAWAVTAAYFADGARVDLGATK
AQLDVLPRLTEVRPYRLAVDMEFEAWADQMGLVFAVIHIASNFGELRLSP
KLLPMEAYVIMHPSSMEVALKEGDVHILGQLGHCMRILGAKPGDAALERA
AAALLRLQRLDGSWPARDDARPYSRFHAAAAAAAALAPPTFRGFGPGDPA
VAALLQTLQPHAGIGATAGALQVDGGGGGRGGGGRASANSGSSGGGSMSS
GGGGACGAPARTQLCGCGILIAPEMGGLSAVAAEYVGSSHGHGGDLHLGL
RERARRRLRALVRWRQQQEAAAAAAAVGGFGGDGSGGGGGAGGGGGVARR
SDPGRWGRLSRRAARKGLE*

mRNA from alignment at Contig_4:1994088..2000591+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1774 ID=mRNA_1774|Name=jgi.p|Trimin1|346747|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6504bp|location=Sequence derived from alignment at Contig_4:1994088..2000591+ (Tribonema minus UTEX_B_3156 )
ATGCCGCAAGATCTCGATGTCGACGATCCAGCCAATCCGCCGCCCATATC
CATATCGGTGGATCTCAGCAACCTCAGCAGCGACAGCAGGAGGCCAGGAT
CGCTAAATTCGCCTATGGTGTCCGTGGCTTCAGAGGAGCTGAATGCTGCT
GAGGTAAGAACCTGCAACTTCAAGTTTCATGCTGCAAAAGGCTCACCTGA
ATGCAGTCAAGGGCGCACTCAGAGTCTTGCCTGAGGTTCAGCATGCAACA
CTTGTGCCATATCGAACTTTTCGAGCTCAGAGGCACGATGTGGGCTGCTG
CCAACTCTATCGATTGCGCAAGGTTGTAGGTCGTCATGCTTCATAAATGC
GTTTGGCACCTGCACAGCCCCTTCGTAGCCATTGCTGTGGGCCAAATGCC
AGAGCAACGTAGACAGATGGCGGAGCGTAGACGTCTCTCTTTGATACGCA
GCTCTGGTTGTAAGGTGCATTGAATGCAAGGTGCTTGACAAATGAACACG
AATCAAAAGATTGTAGAGCTCTAGGTGACAAGGGATGGTTAGCCACAAGT
GCCTTCCTTCCACCATTGCAATAACCGTGGTCGCCGCTGCTGCAGCAGTT
GCCACGAGTCAAACAGTACCACCATATCCACAGTAGTCAAAAAGACTTCT
GTGTGCAAGCTTGTAGCGTTCGAGGCAATGAATGTCATGCTGCCCGATGT
GTGCCGTTTGCAGGTGTCTGGAGCGGAGTCCCTGGGGCAGATGTCTGAGG
CAGAGGAAGGCTTGTTGGCCAACAAATGGTGGGACAAGACACCACCGTTC
ATATCTCAGGAAGTGGTGGTTCCAAACCGGCTTAACCAAGAGGTGAGAGC
CAAGTTGTCTGGTGATGGGCTGACCGTTGCCAGGGCGCTTGCAGGTCTGC
AAAGTTGTGCTGTGTCTGATGGCCAGGTGTGTGAGCAAACGCCACCAACG
TCAGGGCACACACACCACACACCACTGCCTTTCACCCGCTGCGCTGTACT
CCGAATCACTGCCTCACTGCCACAAGGCTCTCTTGAACACCACTGACCCA
TTGCGCCTCGATATCGGTTTACACCGTGCGCGCTCGCCCGCCGCAGGTCT
GCTACGTCTGCAGGGCGCGTGGCGAGCTGCTGGAGTGTGCAGGCCCCTGC
TGTCGCTCCTTCCACCTGCCGTGCTGCGGCGCGGCCGCCGGAACTGCTGC
CACCAAGGCCGCTGTGAACTGGCTGTGCGACGAGTGCGTGATGCTGCACG
ACGCGCTTCAGCTCAGGTACAGTACCTACATCCGTGCGGTGCGCAGCTGC
CAGCGGACATTGTGACTGAGGTTGGCATGGCCATGAATTGTGCATGCAGT
GCCAAGTACCAAACAGCGATGATCAAATCTATCATCGAGGTGGACAATGC
ATGGCCGCTTCTATCATCATCGGCATCATACTCAGTCCTGATCATGTGCG
CTGTGGCAGAGGACACTTGCGGGCCTTGTCGGCCTTCAAGTGCCGGCAAG
GCTGCATCTCACGTGATGGCTTGCCACCTGCTGTCCGCTTGCTCTAGCAC
CTGCTCTGTAGCATACACTTGACTCAAGGAGTCTGACGCATCGCACCGTA
CGCTTGCCGGTCATGACAGGCGCGAGAAGGAGCAAGAAACGGCCATGGCA
AAGGCGCCAAATCACCGCGAAGCTCCCGTTGAAACGCGACACCGGCAGTT
GCATCAGGAGCTCAACATAGCCCTAACGGCCTATACTACGCCAGCCTCGG
GGGTGGTCGATGCCGTGCGCAGAGGGCTGAGCTTCATCTACCGGCTGGTC
GAAGACCCCAAGAACTTTGCAGATTTCGGGGCCGACATGATGGTGAGCAG
CGATTGGGAGGCGAGCTGCTTTGACCACCTTACTGTGACTTTAGAAAATG
TTGCCTCTTGCTCAGCACGTCATGAGGTCTTGTAGGAGGAGAAGCAGATA
TGGAGGTACATTGACTTACATGCATAGGAGCGACTCTGGACTGGGCGCTG
CATATATGGATCCGTGATGTGGCATGAGCTGAGTCAGCCAACCAGGACAA
TATGCCACCAAGAGCATTTGGTACCATACAGGCATGCAGAAGCTCACGTT
GTCTTGCGCTTGGCTGCAGTATGCATCATTAGCACTGCGTGCTGCACTAC
TAGAGAGGCCATTGTTGCGCGAACTTTGTGAATGTTCAGCGTTGCACATT
CTCGGAATGTGGTGATGGTGCTGCTGCTGGTCTTCACATCTCTAACCCAG
AGCCTCGTGACCTGCCTGCTGCCACAGCACACATTCCACGACCTTTCGCT
GGTCACGAAAGAGCCTCTGCGACAATTTGCACTGGATCGCCTGGAGGCGC
TGGCGCAGCGCTGGAAGATGCGATATCAGAAGCTCAGCGACATACAGCGT
GGTTCAAGAGGTGACTTGCCAACTGCCCCTCAGATCACTGTAGGGGGTCC
CATCTACAGTAAGGCAAGATGGCAGATACCATGGCGTATCTAAATGCTCC
ATGCAGGTGCCTCTTGCGGCAGTCACTTTGTGTACGCATGTATGACACAT
CAGCAGACCAACCGCCCTTCTCGCTCCTAACTGGCCAATGTGCGCCATAT
TAGCATTGGCATGGCCTTATGATGATTTTGTCCAGACTTGCTGATGCCGC
AATCACACGACGCTCACAGAATGTGAACCTTGCTTGCCAATGCGATGGTT
GGGCGCACAGGGCGATGACGCACAGTGCTGACGTCCAAACATTGTCCGTT
TGCTCTCTCGCCCCCGCAGTTTCTGCAAGTGACGTAATGGATGCGGTGAT
GGGCATACATGCGCTGGAGCGCATTGGCATCACACACTCCCTCAAGGCGG
AGACCCGCAAGTGAGCTGCCCAACAATACAGTATGTACTTGTACTACATC
TTTCTGACTTGCATCGAATGCGCTCGTATGCCACTTCATCTAATCACAAT
GATGATAAATCTCAGATGTTGGTCATGGCGGGTGATATTAGTCGTGACTA
GTAAAATCAACAGGAGACATGGAGCTTTTGCTTTGCTCAAGGCCTCTGCT
GTCTCACCGTACAGCATGTCGTTTTGGCATCTTCAACATGCCTGTTTCTG
TGTACAACTTCAGTCCTGTAGTGGGCAACTGTAGAGATTGATGTACGCTT
CATATTGTCTTGACCTTTAGTCTTCTCACGCAGTTGCTACTTGTCATGTC
AGCAAGTGAAACATTGCAATTGCTGCCTTGACCAGTCCCAACGCCATGTC
AGCAAATGTGCGCAAACACACTGCAGTGGCTGATTTGATCATCCCAACAT
CAAGTACTGCTGCTCAAACACACTGCAATGGCTGATTTGATTAGTCCCAA
CAACACGTACTGCAACTTCAAGTGTAGCAAAGTTCCGCCGCAGCTCACCA
ACCAGTTGATTGTGTGCCTCTAATAAATGCAAGTCGTTGCAGAAACTTGC
ATTGTTGCCTTGAGTCATTCATCTATCAGTTGAGTCTAACGCCAACGACA
TTCGTTTGTTAAAGGGTAATCATTATATATCCATCCATGTTGTTGTGCAA
GCGCAAGGCTGGTCATATGTATGTGTGTGTCATTGTCAAACCTGCTGCAC
CTAGGACCAGCTGCAAGTCCTGGCATGTCACAGTGAACATGCCACGTAAG
ACCACATGCAAATATGAGCTGCAGAGCAGGATGATTTGCCCAGTGACACC
ATTGCTCACATACAAACTCACTGCCCATGTACCCTCACCACAGGTTCGTC
CAACAAAGCGACTACATGGGTCTGCACGACTATCTAGGGCTCACTGAGGG
CGACGGGGAGGGGGGTGCGGGCCCCTGCGCCCTGGCTTGGGCAGTCACGG
CAGCGTACTTTGCAGATGGCGCGCGCGTGGATCTGGGCGCCACAAAAGCA
CAATTAGACGTGCTGCCACGGCTGACCGAGGTGCGGCCGTACAGGCTGGC
GGTGGACATGGAGTTTGAAGCTTGGGCAGACCAGGTGCGCGGACTAAGTA
CTTGTCAGTAATTGTCGCTTGAGGCGCGATAAATCACAGATGAGCGATGT
CAAGCTTGTGCGTATGTACATAGTGTCAGACGTGTGATGTGGTGGAGTGT
GAGAGCTTTTGAGGTGTGCAAACCTCCTGGCATCAAAGCATGAGAGTTCT
GTCGGTTACGTTGCCATTAAGCACGTTGTGTGTTAGTACGGGGTCCTGCA
CCGTCAACAATGTCGAGGCCATACCTCAGAGTACATGACAGGCAACGCTG
CATGGTTTACTTCAACTTGAAGTTTTTGGTTGTTGGAACTTTTACCGGGC
CTCTCAAACATTTGCAGCTTTGATGGGGGTAGATCAGCAATCATTCAAAG
CTTTGGTGGTGGTAGAGCAAAAATGATTGTCTGAAGTACATGTCACCTTA
GCCCTTACAAGGTGTGTTGTGCACTTCAAACCTACATACATTTTCAGGTA
TGGTTGGATGAATAATCACTGTGGCTGTCCACCAATTGCTGTGGCATGCT
TACTGGTCTCCTTGCATCCCCTACAGCCCACCTTGAACTGCTCATTGCTG
TTTCCTGTTGATTTATGTCTGCAGATGGGGCTGGTGTTTGCAGTTATACA
CATAGCATCAAATTTTGGCGAGCTTCGCCTGTCGCCCAAGCTGCTGCCCA
TGGAGGCATACGTTATCATGTGAGCGCATGAACGTGTGTGTTCAGTGTAT
ATGGATCTGTTCTTGCAGCCACATGATTGGCGACGAAGCCAAAGCTTTAC
TATTGTCATCTTTAATTAGGACATGCTACTGTGCACACTGCTACATGAGC
TGCAGCAAGAGGTCAAGAGACGCACTGCAGGACTTGTGAGCCATTCACCA
TACGTTCTTGCAGCGGCACCAAATGAAGCTGCAACAACCCTTGTCACCCA
GTTCGTCTTTATTCGGCAGAATGTTTGCCCTGAAGATGCAACGCCATGCA
AGCAGTTCTGCCATGTGGCGATGCCTCACATGCCACCCTGAAGCACCCTT
GACAATGTCCTCATCAATATTATTGCTGTGTGCATGTATGTATGTATGCG
CCAGGCACCCGTCCAGCATGGAGGTGGCACTCAAGGAAGGCGACGTGCAC
ATCCTGGGACAGCTGGTGAGCAATCAGCGATCACGACATGCGTGCATGCG
GGGGAGTCTGTGGCTCCAACATTCCCTGTTGTGTCCCCCTGTCCCGTTCG
TTTATTCGGGGAAGGAAATACATGGCATGTGTACTGGCAGTCGCTGCAAA
TGCTGTAAATGTGGGGCAGCATACATACCGCTGGGATGCACATGGGACTT
TGCGGCGTTTGCGCTGGCATGCTGGTATTGGCATCCCTTGCCAAATCTGG
AAGCCCAGCAATGTGAAATGTTTGTAGCCAATGACCGGCAGTCATGCTGC
GCAAGCCTCAGTGAACCCTGTATGGCAGCCACGCGTGCTGCGACAGCATG
CTTGGGCGCGCACTCATACCCCAGTCAACTGACATGAAATCCACCCCGAG
TAGTACCACGCACCTCACGCGTGGCCTGCGCACACCCCTGACAGCCCACG
CCCTCAACGACGTCACATCGCCCCCCTCCCTCCCCCTTCAGGGTCACTGC
ATGCGCATCCTGGGCGCCAAACCCGGCGACGCGGCGCTGGAGCGCGCCGC
CGCTGCGCTGCTGCGCCTGCAGCGCCTGGACGGCTCGTGGCCCGCGCGCG
ACGACGCGCGCCCCTACTCGCGCTTCCACGCCGCCGCCGCCGCCGCCGCC
GCCCTCGCGCCGCCGACGTTCCGCGGCTTCGGCCCGGGCGACCCCGCCGT
GGCGGCGCTGCTGCAGACGCTGCAGCCGCACGCTGGCATCGGCGCAACTG
CCGGCGCGCTTCAGGTGGACGGCGGCGGCGGCGGGCGCGGCGGCGGCGGG
CGCGCCAGCGCCAACAGCGGCAGCAGCGGCGGCGGCAGCATGAGCAGCGG
CGGCGGCGGCGCGTGCGGCGCGCCCGCGCGCACGCAGCTGTGCGGCTGCG
GCATCCTCATCGCGCCGGAGATGGGGGGCCTGTCCGCCGTCGCGGCGGAG
TACGTCGGCAGCAGCCACGGGCACGGCGGCGATCTGCACCTGGGCCTGCG
AGAGCGCGCGCGGCGCAGGCTCAGGGCCCTCGTGCGGTGGCGCCAGCAGC
AGGAGGCGGCGGCGGCGGCGGCGGCGGTGGGCGGCTTTGGCGGCGACGGC
AGCGGCGGCGGCGGCGGCGCAGGGGGTGGCGGCGGCGTTGCGCGGCGGTC
AGACCCTGGGAGATGGGGGAGGCTGTCGAGGCGTGCTGCGCGCAAAGGAC
TGGAATAGGAGCGCTGCTGCCTGGCGTGCGCGATGTGTATGTTGTTTGTG
TTTGTCGGTTACTAGTTACAGCCCATGGTGCTCCAAACAACGGACCGTTG
TGTGGGTGGGCACATGACCTCAAATTCCGCCGAGCTCGCTCATCTGATGC
TTGCGGCTGTGTTCAGTAGTATTGCAACAACCATACATGCAACATCAAGT
TCAG

Coding sequence (CDS) from alignment at Contig_4:1994088..2000591+

>mRNA_1774 ID=mRNA_1774|Name=jgi.p|Trimin1|346747|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1860bp|location=Sequence derived from alignment at Contig_4:1994088..2000591+ (Tribonema minus UTEX_B_3156 )
ATGCCGCAAGATCTCGATGTCGACGATCCAGCCAATCCGCCGCCCATATC
CATATCGGTGGATCTCAGCAACCTCAGCAGCGACAGCAGGAGGCCAGGAT
CGCTAAATTCGCCTATGGTGTCCGTGGCTTCAGAGGAGCTGAATGCTGCT
GAGGTGTCTGGAGCGGAGTCCCTGGGGCAGATGTCTGAGGCAGAGGAAGG
CTTGTTGGCCAACAAATGGTGGGACAAGACACCACCGTTCATATCTCAGG
AAGTGGTGGTTCCAAACCGGCTTAACCAAGAGGTCTGCTACGTCTGCAGG
GCGCGTGGCGAGCTGCTGGAGTGTGCAGGCCCCTGCTGTCGCTCCTTCCA
CCTGCCGTGCTGCGGCGCGGCCGCCGGAACTGCTGCCACCAAGGCCGCTG
TGAACTGGCTGTGCGACGAGTGCGTGATGCTGCACGACGCGCTTCAGCTC
AGAGGGCTGAGCTTCATCTACCGGCTGGTCGAAGACCCCAAGAACTTTGC
AGATTTCGGGGCCGACATGATGCACACATTCCACGACCTTTCGCTGGTCA
CGAAAGAGCCTCTGCGACAATTTGCACTGGATCGCCTGGAGGCGCTGGCG
CAGCGCTGGAAGATGCGATATCAGAAGCTCAGCGACATACAGCGTGGTTC
AAGAGTTTCTGCAAGTGACGTAATGGATGCGGTGATGGGCATACATGCGC
TGGAGCGCATTGGCATCACACACTCCCTCAAGGCGGAGACCCGCAAGTTC
GTCCAACAAAGCGACTACATGGGTCTGCACGACTATCTAGGGCTCACTGA
GGGCGACGGGGAGGGGGGTGCGGGCCCCTGCGCCCTGGCTTGGGCAGTCA
CGGCAGCGTACTTTGCAGATGGCGCGCGCGTGGATCTGGGCGCCACAAAA
GCACAATTAGACGTGCTGCCACGGCTGACCGAGGTGCGGCCGTACAGGCT
GGCGGTGGACATGGAGTTTGAAGCTTGGGCAGACCAGATGGGGCTGGTGT
TTGCAGTTATACACATAGCATCAAATTTTGGCGAGCTTCGCCTGTCGCCC
AAGCTGCTGCCCATGGAGGCATACGTTATCATGCACCCGTCCAGCATGGA
GGTGGCACTCAAGGAAGGCGACGTGCACATCCTGGGACAGCTGGGTCACT
GCATGCGCATCCTGGGCGCCAAACCCGGCGACGCGGCGCTGGAGCGCGCC
GCCGCTGCGCTGCTGCGCCTGCAGCGCCTGGACGGCTCGTGGCCCGCGCG
CGACGACGCGCGCCCCTACTCGCGCTTCCACGCCGCCGCCGCCGCCGCCG
CCGCCCTCGCGCCGCCGACGTTCCGCGGCTTCGGCCCGGGCGACCCCGCC
GTGGCGGCGCTGCTGCAGACGCTGCAGCCGCACGCTGGCATCGGCGCAAC
TGCCGGCGCGCTTCAGGTGGACGGCGGCGGCGGCGGGCGCGGCGGCGGCG
GGCGCGCCAGCGCCAACAGCGGCAGCAGCGGCGGCGGCAGCATGAGCAGC
GGCGGCGGCGGCGCGTGCGGCGCGCCCGCGCGCACGCAGCTGTGCGGCTG
CGGCATCCTCATCGCGCCGGAGATGGGGGGCCTGTCCGCCGTCGCGGCGG
AGTACGTCGGCAGCAGCCACGGGCACGGCGGCGATCTGCACCTGGGCCTG
CGAGAGCGCGCGCGGCGCAGGCTCAGGGCCCTCGTGCGGTGGCGCCAGCA
GCAGGAGGCGGCGGCGGCGGCGGCGGCGGTGGGCGGCTTTGGCGGCGACG
GCAGCGGCGGCGGCGGCGGCGCAGGGGGTGGCGGCGGCGTTGCGCGGCGG
TCAGACCCTGGGAGATGGGGGAGGCTGTCGAGGCGTGCTGCGCGCAAAGG
ACTGGAATAG