Trimin1|346713|estExt_Genemark1.C_Ctg_40173 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|346713
Unique NameTrimin1|346713|estExt_Genemark1.C_Ctg_40173
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length156
Homology
BLAST of jgi.p|Trimin1|346713 vs. uniprot
Match: A0A836CCI8_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCI8_9STRA)

HSP 1 Score: 293 bits (749), Expect = 5.110e-100
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0
Query:    1 MKVTGAIVLAAACGAQAFVAPSAGVRSTQLSMTAQPVDRMAFLKSAATAAVVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAGKVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRINNGLYR 155
            MKVTGAIVLAAACGAQAFVAPSAGVRSTQLSMTAQPVDRMAFLKSAATAAVVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAGKVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRINNGLYR
Sbjct:    1 MKVTGAIVLAAACGAQAFVAPSAGVRSTQLSMTAQPVDRMAFLKSAATAAVVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAGKVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRINNGLYR 155          
BLAST of jgi.p|Trimin1|346713 vs. uniprot
Match: D7G9E0_ECTSI (PS II complex 12 kDa extrinsic protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9E0_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 7.230e-57
Identity = 98/159 (61.64%), Postives = 126/159 (79.25%), Query Frame = 0
Query:    1 MKVTGAIVLAAACGAQAFVA---PSAGVRSTQLSMTAQ-PVDRMAFLKSAATAAVVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAGKVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRINNGLYR 155
            MK T   VLA    A AFV    P+A + +   +M+A+ P  R  FLKSAA AA + + +AAPALAE+DNPVVPFLGGGDK+D+NNANVRAYIK+ GMYP+ AGK+VSNGPY++V+++Y+IKGLS +EK+ +KK+ESRF+T++PQ MY IDRINNGLYR
Sbjct:    1 MKFTTVAVLACVGSASAFVPHALPAARMSARTTTMSAESPASRGDFLKSAAGAAAL-LGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 158          
BLAST of jgi.p|Trimin1|346713 vs. uniprot
Match: A0A7S4RBC4_9STRA (PS II complex 12 kDa extrinsic protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBC4_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.580e-48
Identity = 90/141 (63.83%), Postives = 102/141 (72.34%), Query Frame = 0
Query:   15 AQAFVAPSAGVRSTQLSMTAQPVDRMAFLKSAATAAVVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAGKVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRINNGLYR 155
            A AF AP A  +ST L+  A    R  F  +AA AA+ A  VAAPA A +D   + +LGG + VDLNNANVR Y+KMPGMYPTVAGK+VSNGPYA+VADVY IKGL+E EK VLKKYESRF T  P   Y IDRINNGLYR
Sbjct:   31 AAAFTAPQAVKQSTALNAEA---GRREFFGTAAAAAIGAFGVAAPASAVVDYEALAYLGGSNVVDLNNANVRVYLKMPGMYPTVAGKIVSNGPYASVADVYKIKGLTEAEKGVLKKYESRFTTFSPSPDYVIDRINNGLYR 168          
BLAST of jgi.p|Trimin1|346713 vs. uniprot
Match: A0A6V2FDJ2_9STRA (PS II complex 12 kDa extrinsic protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2FDJ2_9STRA)

HSP 1 Score: 162 bits (410), Expect = 4.610e-48
Identity = 93/154 (60.39%), Postives = 106/154 (68.83%), Query Frame = 0
Query:    2 KVTGAIVLAAACGAQAFVAPSAGVRSTQLSMTAQPVDRMAFLKSAATAAVVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAGKVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRINNGLYR 155
            K+  AI  A    A AF AP A  +ST L+  A    R  F  +AA AA+ A  VAAPA A +D   + +LGG + VDLNNANVR Y+KMPGMYPTVAGK+VSNGPYA+VADVY IKGL+E EK VLKKYESRF    P   Y IDRINNGLYR
Sbjct:   30 KMKLAIFAALVSAAAAFTAPQAVKQSTALNADA---GRREFFGTAAAAAIGAFGVAAPASAVVDYEALAYLGGSNVVDLNNANVRVYLKMPGMYPTVAGKIVSNGPYASVADVYKIKGLTEAEKEVLKKYESRFAAFTPSPDYVIDRINNGLYR 180          
BLAST of jgi.p|Trimin1|346713 vs. uniprot
Match: A0A7S2GXA3_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GXA3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 2.980e-47
Identity = 90/150 (60.00%), Postives = 103/150 (68.67%), Query Frame = 0
Query:    6 AIVLAAACGAQAFVAPSAGVRSTQLSMTAQPVDRMAFLKSAATAAVVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAGKVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRINNGLYR 155
            AI+ A    A AF AP    +ST L+  A    R  F  SAA AA+ A  VAAPA A +D   + +LGG   VDLNNANVR Y+KMPGMYPTVAGK+VSNGPYA+V+DVYNIKGL+  EK +LKKYESRF    P   Y IDRINNGLYR
Sbjct:    4 AILAALVSAAAAFTAPQTVQQSTALNAEA---GRREFFGSAAAAAIGAFGVAAPASAVVDYENIGYLGGSSIVDLNNANVRVYLKMPGMYPTVAGKIVSNGPYASVSDVYNIKGLTSGEKEILKKYESRFTAKAPSADYVIDRINNGLYR 150          
BLAST of jgi.p|Trimin1|346713 vs. uniprot
Match: A0A6U4G1G5_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4G1G5_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.610e-44
Identity = 84/147 (57.14%), Postives = 99/147 (67.35%), Query Frame = 0
Query:    9 LAAACGAQAFVAPSAGVRSTQLSMTAQPVDRMAFLKSAATAAVVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAGKVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRINNGLYR 155
            LA    A AFV   AG ++T L+  A    R  F   AA AA VA + AAPA A +D   + +LGG   VD+NNANVR Y+KMPGMYP  AGK+VSNGPY +V+DVYNI GL+  EK  +KKYESRFV L+P   Y IDRINNGLYR
Sbjct:    7 LATVATAAAFVPQQAGPQTTALNAEA---GRREFFGKAAGAAAVAFAAAAPANAVVDYENIAYLGGSSTVDINNANVRVYLKMPGMYPAAAGKIVSNGPYKSVSDVYNIPGLTSAEKDAIKKYESRFVALKPSADYVIDRINNGLYR 150          
BLAST of jgi.p|Trimin1|346713 vs. uniprot
Match: A0A7S1BM05_9STRA (PS II complex 12 kDa extrinsic protein n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BM05_9STRA)

HSP 1 Score: 151 bits (382), Expect = 5.630e-44
Identity = 86/149 (57.72%), Postives = 101/149 (67.79%), Query Frame = 0
Query:    7 IVLAAACGAQAFVAPSAGVRSTQLSMTAQPVDRMAFLKSAATAAVVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAGKVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRINNGLYR 155
            ++LA      A  AP+A  +    S+ A+  DR AFL +AA A   AV  A+PA A  D   + +LGG DKVDLNNANVR Y+KMPGMYP VAGK+VS+GPYA+V DVY I GL+  EK VLKKYESRFV   P   Y IDRINNGLYR
Sbjct:   21 VILAVLASTVAAFAPNAASQRMASSLAAENTDRRAFL-NAALATSAAVVAASPAGAIRDYEAIGYLGGSDKVDLNNANVRVYLKMPGMYPAVAGKIVSHGPYASVGDVYKIDGLTGGEKEVLKKYESRFVVTAPSPDYVIDRINNGLYR 168          
BLAST of jgi.p|Trimin1|346713 vs. uniprot
Match: F0YKI8_AURAN (PS II complex 12 kDa extrinsic protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKI8_AURAN)

HSP 1 Score: 150 bits (378), Expect = 8.790e-44
Identity = 70/106 (66.04%), Postives = 85/106 (80.19%), Query Frame = 0
Query:   50 AVVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAGKVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRINNGLYR 155
            AV   SVAAPALA+ D   +P+LGG  K+D+NNAN+R Y K+PGMYP  AGK+ SNGPY +V+DVYNIKGL + EK+ +KKYESRF+TLEP  MY IDR+NNGLYR
Sbjct:   32 AVTGASVAAPALADTDYAGLPYLGGSSKIDINNANIRVYAKLPGMYPGAAGKIASNGPYKSVSDVYNIKGLKDAEKAAIKKYESRFITLEPAPMYVIDRMNNGLYR 137          
BLAST of jgi.p|Trimin1|346713 vs. uniprot
Match: A0A1Z5JA50_FISSO (PS II complex 12 kDa extrinsic protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JA50_FISSO)

HSP 1 Score: 148 bits (373), Expect = 6.660e-43
Identity = 82/141 (58.16%), Postives = 99/141 (70.21%), Query Frame = 0
Query:   15 AQAFVAPSAGVRSTQLSMTAQPVDRMAFLKSAATAAVVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAGKVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRINNGLYR 155
            A AFV PSA   S  L       +R  FL + A AA +A  +AA A+ + DN  V +LGG + VD+NNANVR Y+KMPG+YPTVAGK+ +NGPY +VAD+YNI GLS KEK ++KKYESRF  LEP   Y IDRINNGLYR
Sbjct:   13 AAAFVTPSAERASVALQA-----ERREFLSALAGAAALAAPMAANAVRDYDN--VGYLGGSEIVDVNNANVRVYLKMPGLYPTVAGKIATNGPYKSVADLYNIPGLSGKEKELIKKYESRFTALEPSADYVIDRINNGLYR 146          
BLAST of jgi.p|Trimin1|346713 vs. uniprot
Match: A0A4D9D8S1_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8S1_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.560e-42
Identity = 82/151 (54.30%), Postives = 107/151 (70.86%), Query Frame = 0
Query:    7 IVLAAACGAQAFVAPSAGVRSTQLSMTAQPVDRMAFLKSAATAAVVAVSVAAPALA--EIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAGKVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRINNGLYR 155
            I L  A  A AF+ P+   + T++ M+A       + K  A AA V + + AP +A  +ID   V +LGG +K+D+NNANVR Y + PGMYPTVAGK+VS+GPY TVAD+Y+I GL+E+EKS+LKKYES+F+TLEP   Y IDRINNGLYR
Sbjct:    5 IALLLAAPALAFMPPTPAPQRTEVIMSAS----RDWKKDLAKAAFVVMPMVAPLVAGAKIDYEGVGYLGGSEKIDVNNANVRVYSRFPGMYPTVAGKIVSHGPYKTVADLYSISGLTEQEKSILKKYESKFITLEPAPEYTIDRINNGLYR 151          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346713 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CCI8_9STRA5.110e-100100.00PS II complex 12 kDa extrinsic protein n=1 Tax=Tri... [more]
D7G9E0_ECTSI7.230e-5761.64PS II complex 12 kDa extrinsic protein n=2 Tax=Ect... [more]
A0A7S4RBC4_9STRA1.580e-4863.83PS II complex 12 kDa extrinsic protein n=3 Tax=Dit... [more]
A0A6V2FDJ2_9STRA4.610e-4860.39PS II complex 12 kDa extrinsic protein n=3 Tax=Dit... [more]
A0A7S2GXA3_9STRA2.980e-4760.00PS II complex 12 kDa extrinsic protein n=1 Tax=Hel... [more]
A0A6U4G1G5_9STRA1.610e-4457.14PS II complex 12 kDa extrinsic protein n=1 Tax=Min... [more]
A0A7S1BM05_9STRA5.630e-4457.72PS II complex 12 kDa extrinsic protein n=4 Tax=Cor... [more]
F0YKI8_AURAN8.790e-4466.04PS II complex 12 kDa extrinsic protein n=1 Tax=Aur... [more]
A0A1Z5JA50_FISSO6.660e-4358.16PS II complex 12 kDa extrinsic protein n=2 Tax=Fis... [more]
A0A4D9D8S1_9STRA1.560e-4254.30PS II complex 12 kDa extrinsic protein n=1 Tax=Nan... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.150.320Photosystem II 12 kDa extrinsic proteincoord: 61..144
e-value: 2.8E-27
score: 96.0
NoneNo IPR availableSUPERFAMILY81585PsbU/PolX domain-likecoord: 67..155
IPR010527Photosystem II PsbU, oxygen evolving complexPFAMPF06514PsbUcoord: 75..154
e-value: 1.2E-32
score: 111.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:1464887..1467405 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346713mRNA_1705Tribonema minus UTEX_B_3156 mRNAContig_4 1464609..1467447 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|346713|estExt_Genemark1.C_Ctg_40173 ID=Trimin1|346713|estExt_Genemark1.C_Ctg_40173|Name=jgi.p|Trimin1|346713|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=156bp
MKVTGAIVLAAACGAQAFVAPSAGVRSTQLSMTAQPVDRMAFLKSAATAA
VVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAG
KVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRIN
NGLYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010527PSII_PsbU