Trimin1|346679|estExt_Genemark1.C_Ctg_40098 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|346679
Unique Name	Trimin1\|346679\|estExt_Genemark1.C_Ctg_40098
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	164

Homology

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BLAST of jgi.p|Trimin1|346679 vs. uniprot
Match: A0A835YTG8_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG8_9STRA)

HSP 1 Score: 283 bits (723), Expect = 8.570e-96
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0

Query:    1 MAVLTPVPLLVVLLLSLPTVMWLAYRGSSYLLGQWDSSSSSSSAQAARSSVQDAVIVNDKAAAPSPKAAEPDAAEILARAAAEDLLDFDARLGTTGSYLSPDALAAGLAAEGLAAYAAVLRRAGVDSAVAATVTEDDLRTELGVTALGDRRRLLAYLQRVARR 163
            MAVLTPVPLLVVLLLSLPTVMWLAYRGSSYLLGQWDSSSSSSSAQAARSSVQDAVIVNDKAAAPSPKAAEPDAAEILARAAAEDLLDFDARLGTTGSYLSPDALAAGLAAEGLAAYAAVLRRAGVDSAVAATVTEDDLRTELGVTALGDRRRLLAYLQRVARR
Sbjct:    1 MAVLTPVPLLVVLLLSLPTVMWLAYRGSSYLLGQWDSSSSSSSAQAARSSVQDAVIVNDKAAAPSPKAAEPDAAEILARAAAEDLLDFDARLGTTGSYLSPDALAAGLAAEGLAAYAAVLRRAGVDSAVAATVTEDDLRTELGVTALGDRRRLLAYLQRVARR 163

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|346679 vs. uniprot

BLAST of jgi.p|Trimin1|346679 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YTG8_9STRA	8.570e-96	100.00	SAM domain-containing protein n=1 Tax=Tribonema mi...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001660	Sterile alpha motif domain	SMART	SM00454	SAM_4	coord: 96..163 e-value: 2.9E-6 score: 36.8
IPR001660	Sterile alpha motif domain	PFAM	PF07647	SAM_2	coord: 108..159 e-value: 3.5E-7 score: 30.2
IPR001660	Sterile alpha motif domain	PROSITE	PS50105	SAM_DOMAIN	coord: 99..163 score: 10.583908
IPR013761	Sterile alpha motif/pointed domain superfamily	GENE3D	1.10.150.50		coord: 104..162 e-value: 4.6E-10 score: 41.4
IPR013761	Sterile alpha motif/pointed domain superfamily	SUPERFAMILY	47769	SAM/Pointed domain	coord: 99..160
None	No IPR available	CDD	cd09487	SAM_superfamily	coord: 120..159 e-value: 6.60203E-5 score: 36.8337

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_4	contig	Contig_4:927488..929135 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|346679	mRNA_1634	Tribonema minus UTEX_B_3156	mRNA	Contig_4 927488..929135 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|346679|estExt_Genemark1.C_Ctg_40098 ID=Trimin1|346679|estExt_Genemark1.C_Ctg_40098|Name=jgi.p|Trimin1|346679|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=164bp
MAVLTPVPLLVVLLLSLPTVMWLAYRGSSYLLGQWDSSSSSSSAQAARSS
VQDAVIVNDKAAAPSPKAAEPDAAEILARAAAEDLLDFDARLGTTGSYLS
PDALAAGLAAEGLAAYAAVLRRAGVDSAVAATVTEDDLRTELGVTALGDR
RRLLAYLQRVARR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001660	SAM
IPR013761	SAM/pointed_sf