mRNA_1634 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|346679
Unique NamemRNA_1634
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|346679 vs. uniprot
Match: A0A835YTG8_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG8_9STRA)

HSP 1 Score: 283 bits (723), Expect = 8.570e-96
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 
Query:    1 MAVLTPVPLLVVLLLSLPTVMWLAYRGSSYLLGQWDSSSSSSSAQAARSSVQDAVIVNDKAAAPSPKAAEPDAAEILARAAAEDLLDFDARLGTTGSYLSPDALAAGLAAEGLAAYAAVLRRAGVDSAVAATVTEDDLRTELGVTALGDRRRLLAYLQRVARR 489
            MAVLTPVPLLVVLLLSLPTVMWLAYRGSSYLLGQWDSSSSSSSAQAARSSVQDAVIVNDKAAAPSPKAAEPDAAEILARAAAEDLLDFDARLGTTGSYLSPDALAAGLAAEGLAAYAAVLRRAGVDSAVAATVTEDDLRTELGVTALGDRRRLLAYLQRVARR
Sbjct:    1 MAVLTPVPLLVVLLLSLPTVMWLAYRGSSYLLGQWDSSSSSSSAQAARSSVQDAVIVNDKAAAPSPKAAEPDAAEILARAAAEDLLDFDARLGTTGSYLSPDALAAGLAAEGLAAYAAVLRRAGVDSAVAATVTEDDLRTELGVTALGDRRRLLAYLQRVARR 163
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346679 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YTG8_9STRA8.570e-96100.00SAM domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:927488..929135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|346679|estExt_Genemark1.C_Ctg_40098
Hectar predicted targeting categorysignal peptide
TranscriptId347001
TrackFilteredModels1
ProteinId346679
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346679gene_1634Tribonema minus UTEX_B_3156 geneContig_4 927488..929135 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1634_1exon_1634_1Tribonema minus UTEX_B_3156 exonContig_4 927488..927564 +
exon_1634_2exon_1634_2Tribonema minus UTEX_B_3156 exonContig_4 928229..928437 +
exon_1634_3exon_1634_3Tribonema minus UTEX_B_3156 exonContig_4 928930..929135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1634CDS_1634Tribonema minus UTEX_B_3156 CDSContig_4 927488..927564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346679Trimin1|346679|estExt_Genemark1.C_Ctg_40098Tribonema minus UTEX_B_3156 polypeptideContig_4 927488..929135 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1634 ID=mRNA_1634|Name=jgi.p|Trimin1|346679|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=492bp|location=Sequence derived from alignment at Contig_4:927488..929135+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTCTTGACGCCGGTGCCGCTGCTCGTGGTCCTGCTGCTGAGCCT
GCCGACGGTCATGTGGCTGGCCTACAGGGGGAGCTCCTATCTGCTGGGGC
AGTGGGATAGCAGCAGCAGCAGCAGCAGCGCTCAGGCGGCGCGCTCGAGC
GTGCAGGACGCGGTCATCGTGAACGACAAGGCGGCGGCGCCGTCGCCCAA
GGCGGCAGAGCCGGACGCCGCAGAGATCCTGGCACGCGCCGCCGCGGAGG
ACCTGCTGGACTTTGACGCGCGGCTGGGCACGACCGGCTCCTACCTGAGC
CCTGACGCGCTGGCGGCGGGCCTCGCGGCGGAGGGCCTCGCGGCGTACGC
GGCCGTGCTGCGGCGCGCCGGCGTCGACAGCGCCGTCGCCGCCACCGTCA
CGGAGGACGACCTGCGTACGGAGCTGGGCGTCACGGCGCTCGGCGACAGG
CGCCGCCTGCTCGCGTACCTGCAGCGCGTCGCGCGGCGGTGA
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protein sequence of jgi.p|Trimin1|346679

>Trimin1|346679|estExt_Genemark1.C_Ctg_40098 ID=Trimin1|346679|estExt_Genemark1.C_Ctg_40098|Name=jgi.p|Trimin1|346679|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=164bp
MAVLTPVPLLVVLLLSLPTVMWLAYRGSSYLLGQWDSSSSSSSAQAARSS
VQDAVIVNDKAAAPSPKAAEPDAAEILARAAAEDLLDFDARLGTTGSYLS
PDALAAGLAAEGLAAYAAVLRRAGVDSAVAATVTEDDLRTELGVTALGDR
RRLLAYLQRVARR*
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mRNA from alignment at Contig_4:927488..929135+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1634 ID=mRNA_1634|Name=jgi.p|Trimin1|346679|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1648bp|location=Sequence derived from alignment at Contig_4:927488..929135+ (Tribonema minus UTEX_B_3156 )
ATGGCCGTCTTGACGCCGGTGCCGCTGCTCGTGGTCCTGCTGCTGAGCCT
GCCGACGGTCATGTGGCTGGCCTACAGGTAACGCAGGAACTTCAATAGCT
TCGTTGTCACATCCCAAGTATGCTCACTCGACTGTTCTCGTACTTCGAAG
ATATCAGATGCTGGCGCAGTGCCGCCGCTGCTTCATACTTCTGAGTGTCA
TATTTGAAGTACGCATGAGTGCGGTCGTGCTGCGGCAACGCTGGTGCTGC
CGCCGCTGCTGCCGAGTCTGCCAACCATCCTGTAGCTGGCCTACAGGTAG
GTAAGTAGTAGCCTCGACATATTCGTCGAGCGCCCGCTGGGACACTTCTG
CAATAAGCTGGCAGTTTCGCTCAGCACCCAGTAGTATCGCAGAGTCCATG
CGTAATGTCTCCATTTACACATCTATGGTCATGCTGCGCCTTTGCTGGCA
CTGGCGCCGCTTGTGCTGACAGGCTGAGCCTGCTGACCGTGCACTGGACG
AATAGGAAGATGCATCAACTTCAGCATACAGGGTGGCTGGGGTCACCGGT
GCGGGGACGCAGTGACCTCCTCAAAACCAAGTTGATGCGCCAGTACAGAC
ACTTCAAAGTACTGTAGAAGTGGCAGTGGGGCAACAACTGCAGCGCTCAG
AGAAAGCGGCCCATCACGGCGAGTGCGCACGCGGTCACGCTGCGAGTCCG
TTTCTCTCCTCCCCCCTGTGTGCGTCCGCGCTGCTCCGCAGGGGGAGCTC
CTATCTGCTGGGGCAGTGGGATAGCAGCAGCAGCAGCAGCAGCGCTCAGG
CGGCGCGCTCGAGCGTGCAGGACGCGGTCATCGTGAACGACAAGGCGGCG
GCGCCGTCGCCCAAGGCGGCAGAGCCGGACGCCGCAGAGATCCTGGCACG
CGCCGCCGCGGAGGACCTGCTGGACTTTGACGCGCGGCTGGGCACGACCG
GTAAGGCCACGGACGGTACGTATGCGTTTTGAAGTATGGCCACAGACACG
TAGGGCACCTCAGAGTTTGCTGTCTGTGTTGTTGCGATTTGACCAACACA
GTTGTTGTCGCGACTCTGATGCGCGGCTGGGCACGACCGGCGAGGCCGCA
GATGGTACGTATGCATGGCCACAGACATTCGTAGGGGTACTACTCAGAGT
GTGTAAGTTTTGTCGTTGGAGTGGGCGTCAGGAAGCGGCGCGTACGCGCG
CGGGCTTTTTCCAGTTGCGCAGGCCGCGTCGGTGCCGGACCTGCTGGGTC
GGCACACGCGCTGGCGGCGGGCCTCGCGGCCGAGGGCCGCGCGGCGTACG
CGCCGGTGCTGCGGCGCGCCGGCGTTGACATCAATAGCTGTATCTGCTCA
ATCAACTGCCTGCTGCACGCGCTCTGCCTTCCAGCGCGGCGGTGCCTGAT
CCCATCTGTCGCTTTGCTTGCGCATACGTATGCCTCGCGCAGGCTCCTAC
CTGAGCCCTGACGCGCTGGCGGCGGGCCTCGCGGCGGAGGGCCTCGCGGC
GTACGCGGCCGTGCTGCGGCGCGCCGGCGTCGACAGCGCCGTCGCCGCCA
CCGTCACGGAGGACGACCTGCGTACGGAGCTGGGCGTCACGGCGCTCGGC
GACAGGCGCCGCCTGCTCGCGTACCTGCAGCGCGTCGCGCGGCGGTGA
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Coding sequence (CDS) from alignment at Contig_4:927488..929135+

>mRNA_1634 ID=mRNA_1634|Name=jgi.p|Trimin1|346679|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=492bp|location=Sequence derived from alignment at Contig_4:927488..929135+ (Tribonema minus UTEX_B_3156 )
ATGGCCGTCTTGACGCCGGTGCCGCTGCTCGTGGTCCTGCTGCTGAGCCT
GCCGACGGTCATGTGGCTGGCCTACAGGGGGAGCTCCTATCTGCTGGGGC
AGTGGGATAGCAGCAGCAGCAGCAGCAGCGCTCAGGCGGCGCGCTCGAGC
GTGCAGGACGCGGTCATCGTGAACGACAAGGCGGCGGCGCCGTCGCCCAA
GGCGGCAGAGCCGGACGCCGCAGAGATCCTGGCACGCGCCGCCGCGGAGG
ACCTGCTGGACTTTGACGCGCGGCTGGGCACGACCGGCTCCTACCTGAGC
CCTGACGCGCTGGCGGCGGGCCTCGCGGCGGAGGGCCTCGCGGCGTACGC
GGCCGTGCTGCGGCGCGCCGGCGTCGACAGCGCCGTCGCCGCCACCGTCA
CGGAGGACGACCTGCGTACGGAGCTGGGCGTCACGGCGCTCGGCGACAGG
CGCCGCCTGCTCGCGTACCTGCAGCGCGTCGCGCGGCGGTGA
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