Trimin1|346317|estExt_Genemark1.C_Ctg_10049 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|346317
Unique NameTrimin1|346317|estExt_Genemark1.C_Ctg_10049
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length267
Homology
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BLAST of jgi.p|Trimin1|346317 vs. uniprot
Match: A0A836CPL4_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPL4_9STRA)

HSP 1 Score: 455 bits (1171), Expect = 1.100e-160
Identity = 263/266 (98.87%), Postives = 263/266 (98.87%), Query Frame = 0 
Query:    1 MWPLALLLALANLLQPCQGLLTASVTMQQSGSGTQIRSLKQLLVRSLVGLDRGIRGSPAACKAVLGIVEELEQLNPTPAPCAGFDTRTSKVAGAWSLLFSDAPDVTLLGALPGVEIGTVKSVQLRPMQLAGLDMSFAPALRAAFPTFAQRTGWFDTLYVDDDLWIIMASDGSNLQALEQRLHRHGLPPMLLVLLLRCRLLSLSLLXXXXXXXEQQYCLHPQQLRQRLMLLEQLRHAXXXXXXXXXXXXXXXXXEELGCAAAAGSAA 266
            MWPLALLLALANLLQPCQGLLTASVTMQQSGSGTQIRSLKQLLVRSLVGLDRGIRGSPAACKAVLGIVEELEQLNPTPAPCAGFDTRTSKVAGAWSLLFSDAPDVTLLGALPGVEIGTVKSVQLRPMQLAGLDMSFAPALRAAFPTFAQRTGWFDTLYVDDDLWIIMASDGSNLQALEQRLHRHGLPPMLLVLLLRCRLLSLSLLXXXXXXXEQQYCLHPQQLRQRLMLLEQLRHA XXXXXXXXXXXXXX  EELGCAAAAGSAA
Sbjct:    1 MWPLALLLALANLLQPCQGLLTASVTMQQSGSGTQIRSLKQLLVRSLVGLDRGIRGSPAACKAVLGIVEELEQLNPTPAPCAGFDTRTSKVAGAWSLLFSDAPDVTLLGALPGVEIGTVKSVQLRPMQLAGLDMSFAPALRAAFPTFAQRTGWFDTLYVDDDLWIIMASDGSNLQALEQRLHRHGLPPMLLVLLLRCRLLSLSLLXXXXXXXEQQYCLHPQQLRQRLMLLEQLRHASXXXXXXXXXXXXXXPPEELGCAAAAGSAA 266
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BLAST of jgi.p|Trimin1|346317 vs. uniprot
Match: A0A0G4GR69_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GR69_9ALVE)

HSP 1 Score: 59.3 bits (142), Expect = 1.710e-6
Identity = 27/82 (32.93%), Postives = 50/82 (60.98%), Query Frame = 0 
Query:   38 SLKQLLVRSLVGLDRGIRGSPAACKAVLGIVEELEQLNPTPAPCAGFDTRTSKVAGAWSLLFSDAPDVTLLGALPGVEIGTV 119
            SLK+  + ++V  +RG   +    + ++ ++++LE+ NP P P    +   S + G W LL+++A DV LLGA+P V++G +
Sbjct:   82 SLKKDFLAAVVSTNRGFSTTSLEKETLMDLIQQLEKRNPNPEPLKASELSRSPLFGEWRLLYTNAIDVLLLGAIPVVQVGRI 163
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346317 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CPL4_9STRA1.100e-16098.87PAP_fibrillin domain-containing protein n=1 Tax=Tr... [more]
A0A0G4GR69_9ALVE1.710e-632.93Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006843Plastid lipid-associated protein/fibrillin conserved domainPFAMPF04755PAP_fibrillincoord: 38..119
e-value: 1.9E-9
score: 37.8
IPR039633Plastid-lipid-associated proteinPANTHERPTHR31906FAMILY NOT NAMEDcoord: 36..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:144616..149327 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346317mRNA_943Tribonema minus UTEX_B_3156 mRNAContig_1 144600..149327 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|346317|estExt_Genemark1.C_Ctg_10049 ID=Trimin1|346317|estExt_Genemark1.C_Ctg_10049|Name=jgi.p|Trimin1|346317|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=267bp
MWPLALLLALANLLQPCQGLLTASVTMQQSGSGTQIRSLKQLLVRSLVGL
DRGIRGSPAACKAVLGIVEELEQLNPTPAPCAGFDTRTSKVAGAWSLLFS
DAPDVTLLGALPGVEIGTVKSVQLRPMQLAGLDMSFAPALRAAFPTFAQR
TGWFDTLYVDDDLWIIMASDGSNLQALEQRLHRHGLPPMLLVLLLRCRLL
SLSLLQQQQQSLEQQYCLHPQQLRQRLMLLEQLRHASPLLLLLLLRQLQL
LPPEELGCAAAAGSAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006843PAP/fibrillin_dom
IPR039633PAP