mRNA_943 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|346317
Unique Name	mRNA_943
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|346317 vs. uniprot
Match: A0A836CPL4_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPL4_9STRA)

HSP 1 Score: 455 bits (1170), Expect = 1.910e-160
Identity = 263/266 (98.87%), Postives = 263/266 (98.87%), Query Frame = 2

Query:   17 MWPLALLLALANLLQPCQGLLTASVTMQQSGSGTQIRSLKQLLVRSLVGLDRGIRGSPAACKAVLGIVEELEQLNPTPAPCAGFDTRTSKVAGAWSLLFSDAPDVTLLGALPGVEIGTVKSVQLRPMQLAGLDMSFAPALRAAFPTFAQRTGWFDTLYVDDDLWIIMASDGSNLQALEQRLHRHGLPPMLLVLLLRCRLLSLSLLXXXXXXXEQQYCLHPQQLRQRLMLLEQLRHAXXXXXXXXXXXXXXXXXEELGCAAAAGSAA 814
            MWPLALLLALANLLQPCQGLLTASVTMQQSGSGTQIRSLKQLLVRSLVGLDRGIRGSPAACKAVLGIVEELEQLNPTPAPCAGFDTRTSKVAGAWSLLFSDAPDVTLLGALPGVEIGTVKSVQLRPMQLAGLDMSFAPALRAAFPTFAQRTGWFDTLYVDDDLWIIMASDGSNLQALEQRLHRHGLPPMLLVLLLRCRLLSLSLLXXXXXXXEQQYCLHPQQLRQRLMLLEQLRHA XXXXXXXXXXXXXX  EELGCAAAAGSAA
Sbjct:    1 MWPLALLLALANLLQPCQGLLTASVTMQQSGSGTQIRSLKQLLVRSLVGLDRGIRGSPAACKAVLGIVEELEQLNPTPAPCAGFDTRTSKVAGAWSLLFSDAPDVTLLGALPGVEIGTVKSVQLRPMQLAGLDMSFAPALRAAFPTFAQRTGWFDTLYVDDDLWIIMASDGSNLQALEQRLHRHGLPPMLLVLLLRCRLLSLSLLXXXXXXXEQQYCLHPQQLRQRLMLLEQLRHASXXXXXXXXXXXXXXPPEELGCAAAAGSAA 266

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BLAST of jgi.p|Trimin1|346317 vs. uniprot
Match: A0A0G4GR69_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GR69_9ALVE)

HSP 1 Score: 59.3 bits (142), Expect = 1.820e-6
Identity = 27/82 (32.93%), Postives = 50/82 (60.98%), Query Frame = 2

Query:  128 SLKQLLVRSLVGLDRGIRGSPAACKAVLGIVEELEQLNPTPAPCAGFDTRTSKVAGAWSLLFSDAPDVTLLGALPGVEIGTV 373
            SLK+  + ++V  +RG   +    + ++ ++++LE+ NP P P    +   S + G W LL+++A DV LLGA+P V++G +
Sbjct:   82 SLKKDFLAAVVSTNRGFSTTSLEKETLMDLIQQLEKRNPNPEPLKASELSRSPLFGEWRLLYTNAIDVLLLGAIPVVQVGRI 163

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|346317 vs. uniprot

BLAST of jgi.p|Trimin1|346317 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CPL4_9STRA	1.910e-160	98.87	PAP_fibrillin domain-containing protein n=1 Tax=Tr...	[more]
A0A0G4GR69_9ALVE	1.820e-6	32.93	Uncharacterized protein n=1 Tax=Chromera velia CCM...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_1	contig	Contig_1:144600..149327 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|346317\|estExt_Genemark1.C_Ctg_10049
Description	response to acid chemical
COG category	S
Max annot lvl	2759\|Eukaryota
EggNOG OGs	28JPH@1\|root,2QS2T@2759\|Eukaryota
Evalue	2.76e-12
Seed ortholog	2880.D7FJD3
Hectar predicted targeting category	signal peptide
TranscriptId	346639
Track	FilteredModels1
ProteinId	346317

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|346317	gene_943	Tribonema minus UTEX_B_3156	gene	Contig_1 144600..149327 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|346317	Trimin1\|346317\|estExt_Genemark1.C_Ctg_10049	Tribonema minus UTEX_B_3156	polypeptide	Contig_1 144616..149327 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_943_1	exon_943_1	Tribonema minus UTEX_B_3156	exon	Contig_1 144600..144969 +
exon_943_2	exon_943_2	Tribonema minus UTEX_B_3156	exon	Contig_1 146040..146162 +
exon_943_3	exon_943_3	Tribonema minus UTEX_B_3156	exon	Contig_1 146885..146925 +
exon_943_4	exon_943_4	Tribonema minus UTEX_B_3156	exon	Contig_1 148969..149032 +
exon_943_5	exon_943_5	Tribonema minus UTEX_B_3156	exon	Contig_1 149109..149327 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_943	UTR5_943	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_1 144600..144615 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_943	CDS_943	Tribonema minus UTEX_B_3156	CDS	Contig_1 144616..144969 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_1:144600..149327+
coding sequence from alignment at Contig_1:144600..149327+

spliced messenger RNA

>mRNA_943 ID=mRNA_943|Name=jgi.p|Trimin1|346317|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=817bp|location=Sequence derived from alignment at Contig_1:144600..149327+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGTGTGTAGCTGCCATGTGGCCACTGGCGCTGCTGCTGGCGCTGGCAA
ACCTGCTGCAGCCATGTCAGGGGCTCTTGACAGCGTCAGTGACGATGCAA
CAAAGTGGTAGCGGCACTCAGATACGCTCTCTCAAGCAGCTGCTGGTGCG
ATCGCTCGTGGGGTTGGACAGGGGAATCCGGGGGAGCCCTGCTGCTTGCA
AGGCTGTGCTTGGCATAGTGGAGGAGTTGGAACAGCTGAATCCAACGCCG
GCGCCGTGTGCGGGCTTCGACACACGGACGTCCAAGGTGGCGGGGGCATG
GTCGCTGCTGTTCTCTGATGCGCCGGATGTTACGCTGCTAGGAGCATTGC
CTGGCGTCGAAATAGGCACAGTGAAATCGGTGCAGCTGCGGCCCATGCAG
CTTGCGGGCTTGGACATGTCCTTTGCACCAGCGCTGCGGGCAGCCTTTCC
TACATTTGCGCAACGCACTGGCTGGTTCGACACTCTTTACGTGGACGATG
ACCTGTGGATAATTATGGCCAGCGATGGGAGCAATCTGCAGGCACTGGAG
CAGCGGCTGCACCGCCACGGCCTGCCGCCGATGCTGCTGGTGCTGCTGCT
GCGGTGCCGCCTGCTGTCGCTGTCCCTGTTGCAACAGCAGCAGCAGTCCC
TGGAGCAGCAGTACTGCCTGCACCCGCAACAGCTTCGGCAGCGGTTGATG
CTGCTGGAGCAGCTGCGCCATGCGTCGCCGCTGCTGCTGCTGCTGTTGCT
GCGGCAGCTGCAGCTGCTGCCGCCGGAGGAGTTAGGCTGTGCTGCCGCTG
CTGGTAGTGCAGCTTAG

protein sequence of jgi.p|Trimin1|346317

>Trimin1|346317|estExt_Genemark1.C_Ctg_10049 ID=Trimin1|346317|estExt_Genemark1.C_Ctg_10049|Name=jgi.p|Trimin1|346317|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=267bp
MWPLALLLALANLLQPCQGLLTASVTMQQSGSGTQIRSLKQLLVRSLVGL
DRGIRGSPAACKAVLGIVEELEQLNPTPAPCAGFDTRTSKVAGAWSLLFS
DAPDVTLLGALPGVEIGTVKSVQLRPMQLAGLDMSFAPALRAAFPTFAQR
TGWFDTLYVDDDLWIIMASDGSNLQALEQRLHRHGLPPMLLVLLLRCRLL
SLSLLQQQQQSLEQQYCLHPQQLRQRLMLLEQLRHASPLLLLLLLRQLQL
LPPEELGCAAAAGSAA*

mRNA from alignment at Contig_1:144600..149327+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_943 ID=mRNA_943|Name=jgi.p|Trimin1|346317|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4728bp|location=Sequence derived from alignment at Contig_1:144600..149327+ (Tribonema minus UTEX_B_3156 )
CAGGTGTGTAGCTGCCATGTGGCCACTGGCGCTGCTGCTGGCGCTGGCAA
ACCTGCTGCAGCCATGTCAGGGGCTCTTGACAGCGTCAGTGACGATGCAA
CAAAGTGGTAGCGGCACTCAGATACGCTCTCTCAAGCAGCTGCTGGTGCG
ATCGCTCGTGGGGTTGGACAGGGGAATCCGGGGGAGCCCTGCTGCTTGCA
AGGCTGTGCTTGGCATAGTGGAGGAGTTGGAACAGCTGAATCCAACGCCG
GCGCCGTGTGCGGGCTTCGACACACGGACGTCCAAGGTGGCGGGGGCATG
GTCGCTGCTGTTCTCTGATGCGCCGGATGTTACGCTGCTAGGAGCATTGC
CTGGCGTCGAAATAGGCACAGTAAGTATCATTGTCAGACAGTGAGTTTAT
GCGTATGTAAAGTCTCTGGGCATCATGTCAACTGCTGTGTGGGCTCAACA
CCGTCCCTAACTGCTGCCTCTGTCCCCAATGCTTTCATTTATGGTGCTGT
GCCATTGACTGCATCGCGCTTTGACGCAAAATCCCTTCACTACGCACGTC
ATTGTGCCAGATCCGCCAACTGATCAGTGAGGATGCCTCGGAGATCGTGA
ACACCATAGAGCTCAAGCCGGCGCTGACACCCTTCCTGAGGTGAGATGTT
CACCAACTTCGTCTGCAGACACTGATGATATATCATGCACTTCGATACAT
GCAAAGCTATCGTGCCTGTGCCTGTTCTGCTGGCTCAGTGTGTTGCTGCA
GCTAGTGCGCCAGAGTGCACACTCTCGCCTCATAGCTTCTCACACTCGCG
CCATGACCAGTGCCAGTCTCTGTTGCTGTCTCCACACCTCCGCGACAGCC
CATTTGCCAAAACAGCATCGGAGGCGAGGATAAGCTTGGAGGGGAGTGTC
GTAGGGGACAACAGGATTGCACGAACGGTGAGCATTGCGCTGAGACGCTG
AGTGGAATGCCACAAGCCACTGCAGGTGTGGAACCTGGTGGCAAGCGCTG
GAAATAAAGTAGGCGCGCATTGCTTGTTGTCAGGTTCCTGACATCCACCA
GCCTGCACATAAGGTAAGTGTCACGTGTTGGCACAAACTGACTTGTCTCG
TCCTGAAACTCGTAGCTGCTGGTTGAAGTGCACCCCATCACCAAAGTTCA
CCTGTGCTAAGTCTAAAGTAGGGCTGCGGTGGTGGCACTCCGCTAAGTGG
CCCCATTACCGGCAAAAAAGAGCATGCCATGTGGAGCCCAGCAGATTAAA
CCTTGGCTGCTCATGAAGCAACAAAATCCGCATATCACAAGTCAGGCAAG
TAACGAGCAGCACTCCTCACTGTTGTCGCTTTTGTCCCTTTGTGCTTGTG
ATGTGCACGTACGTGTCTGGGTTGTTGTCTGGGCTGTGTTGCTGTTATCC
CCATGTTCTGATGATGTGCACTTGTCCGGGCGCGTCTCAGGTGAAATCGG
TGCAGCTGCGGCCCATGCAGCTTGCGGGCTTGGACATGTCCTTTGCACCA
GCGCTGCGGGCAGCCTTTCCTACATTTGCGCAACGCACTGGCTGGTTCGA
CACTCTTTACGTGGTGAGAAGTGGCTCTTGACCATTTTCGAAAGCCATTA
GGCGGCACCTTGTGTGGATCTCTGAGCCGCAAGTGCACGTGCTCAAACCA
TCAAGCTACCACTGCAAATGATGCGCCATTGCATGGGTGTGCTGTTGGCT
TGTACCTGTATGTAAGCCTGGAAGCTGCGCCATTGCACGGGCGTGTTGTT
GGCATGAAGTCTACCTTTTTTTTCTTGCAAGTTTGTTTTTTACCAGCTGC
AAACAGGTTTGCATTTTGTAGGTGGCCCTACCATCAAGAGCTGCCTCAGC
TCATTGACTGTAGTGTGGGCTGAAATTGCTGCGACCACACTTCGTGAGCA
TATGCTGGTCGATGATCTGGGGTCGCAACCTTTCCGCGCACCTGTTGTAC
TTGCGTGAGCATACTGATGAGGACTGCTGTGGATGTGCAGTGCGGCACCC
AATACTTCTTTGCGTGCGGACACTGTGGTTGCTCACTGAGGCGCATCAGG
CGTGGTACAACTCTCTTTGCCACTGCAAGCAAGTGTGGACCGCCAACTTG
ACCTACATTGTTACTGAGCGACATGGACAGCTACCCAAGTATTCTGAATG
GGCAGATGAGGCTGCTTGATATGCAAGTGTGATGACTTGTCACCAAGGAC
TTGCTATCATTACCTGCCTTCCATGCGGAGGTGTTGACAACTTGCTGATG
GTGTTCTTGCTTCTCTTTCTGCTGCCACCATGCAGGACGATGACCTGTGG
ATAATTATGGCCAGCGATGGGAGCAAGTACGTATCATCAAGAGACCCATA
AGTGCGGCCTGTACAAACTGCTTGATGGCTTACGCAATAGCTATAATCAC
AACTTCTGGAATCAATACTGCTATATATATACATGCAGCACCTGCTGATC
AAGGTGCTTGAAGGGTAATCAGATCAGCAGGGTCCATGCAAAACCGCGTG
CTCACATTGGTGTGTACCAAAATGCAGCCTTGAAAGTTTTTACAACATTG
TGCGAAGAGGAGGTTATGTGGTGTTTCATTGTACCAAGCGCGTGCTGTTG
CCAACATTTGTGCAGGTTTGCCAAAAGAGCATGATCATCCTTGCTTTCGT
GTCATGTTTGGGTAATGTCAGTGCAAGCAGACAGCATGTCCGCCGCAGTC
AGTTCGCATGACATGCGTTTGTGTCAGTGACGACATATGTCGGATCATGG
TAAACAGCATGCACGTTGTGCCTACATGGCCTGTTCGAGCTTGTCGTACT
CCTCAAATCTCCTCAATGATCGCACGAACAGAGCTTGTTTGCTTGTAAGT
GCGTGCGGCAACGACTCACACAAGTAATTGCCAAGTATCAGCTTGATTAC
GCAACTCTGCGCCCTCGACCCAAGGCCATTGAATTCTAAATCATTCCCCA
GGTTTATGGCTCGATAGGGGATGCAGAAATGGCTAGCGTGCATAACATTA
GTGGTAATTTAGTGCAGCTGCTTATGCCCATGGCTTTTATGCTATGCTAT
GCACGTGGCGTTTACTGTTTTATGGGGGATTGCACACATGGCGGAGTCGA
GAGGGACACGGCTTTAGCCAAGGGGTGGGGCACGATCTGAAGATGACATG
TAATGTTGTCACGTTTTTGTATGGCATTTATTCTTATCTCATGACAAGAC
AACGTACCTTTAATGTTCGTTTTGTATGTGAACACAAAAAGTGCCATCGG
TCTCTGGAACCCCTCTGGAGTCAGTTGCAGCACCAAGTATACTTTCCACA
AGTGAACAGTGTGCACATTTTGTGCGCTAGGCGCTTCTTTGATTAAAAAG
TGTTTCGCACTCATGATTCTTCATGTGTTTTTGGCCTTGAAATGTGAAGG
TCGCGACTTGTGTGCGGTGAATATTGTGGCATATGTAGAGCTGACGCTGC
AAGAGGAGCAGGAAAGGCACTGGTTCTGTCATTACCGCACTGAACTAAGT
TGCTGTGTATGTATTTACGTATGCTCGAACTTGTATTCATGAAGGCCCAT
TGTATGTACACTGAACCTCGGACTGGCAGATGATACCATACGTACCGTAT
ATGTTGATTTGCCCCTTCACGCCGCCTGCGCACGTAAGGCGCAGAACAAT
TTTATGACGTGCCCACGGAAGGATAATGATGACCCCTTCTGTGCGACACA
CGTCAGACGTCAGTGTAGTGAAGAGGTCATTCCTCAAAAAGCGTCTGCCT
CCACTCACACGCTACGACAACGTACGCAACAGCGACATACATGCCTATGG
GCGCCATGAAACATACTTCGCCAGGTGCTAGCAGCAGTAGCACCACCACC
AGCACACGCCGCGAGTACATGCCTTCCAGGCAGCAGCGATGCGCCAACTT
GGGAGGGGCAGTGGCGCTTAGCTCTCGGGAGGATGCCTTTGCCGTTGTGC
ACGGTGGCGACGGCGTCCGCAAGCGCACTCTGGGTCAGGCGCCTATTCAA
GTTGCTAAACTCAACGACTGTAGCCGTTGTGACTGCAAAGCGATGACATC
AAGCACAGCATCTGCAGCTCCAGTCCCGCCACCTGGGCTGCATCGGTGAC
GGAGCTGGTGCTGCCCAGGTTGTTGCAGTGCAAAAGGACTGACGGTGCTG
CTGCCGGCGGCGGCGTTTGCTCCTGTCACTGCTGCAGCCGCGGTAGGGCC
GCTGGCAGCTCTGGCAGATGTTCCAGCTGGTCACTAGTTGCTGCACGCAG
GGACGCTGCGGCTGTGGCGACCATCTGCATGCAGGCAAGTGCGCCACCTC
TACTCGTAATGCCACTACGCCTTGAAGCATTGCTGGAGCGGAACACGAGC
ACGTGCTGCTTCCGAAGAGTCTGCAGGCACTGGAGCAGCGGCTGCACCGC
CACGGCCTGCCGCCGATGCTGCTGGTGCTGCTGGTGCACCGCCGAAGCAG
TTGTGGCGTGCCACTGGCACAGTGGCCACTGCCATTGCCGTTGCCGTTGC
CGCTACCAGCTGCGGTGCCGCCTGCTGTCGCTGTCCCTGTTGCAACAGCA
GCAGCAGTCCCTGGAGCAGCAGTACTGCCTGCACCCGCAACAGCTTCGGC
AGCGGTTGATGCTGCTGGAGCAGCTGCGCCATGCGTCGCCGCTGCTGCTG
CTGCTGTTGCTGCGGCAGCTGCAGCTGCTGCCGCCGGAGGAGTTAGGCTG
TGCTGCCGCTGCTGGTAGTGCAGCTTAG

Coding sequence (CDS) from alignment at Contig_1:144600..149327+

>mRNA_943 ID=mRNA_943|Name=jgi.p|Trimin1|346317|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=801bp|location=Sequence derived from alignment at Contig_1:144600..149327+ (Tribonema minus UTEX_B_3156 )
ATGTGGCCACTGGCGCTGCTGCTGGCGCTGGCAAACCTGCTGCAGCCATG
TCAGGGGCTCTTGACAGCGTCAGTGACGATGCAACAAAGTGGTAGCGGCA
CTCAGATACGCTCTCTCAAGCAGCTGCTGGTGCGATCGCTCGTGGGGTTG
GACAGGGGAATCCGGGGGAGCCCTGCTGCTTGCAAGGCTGTGCTTGGCAT
AGTGGAGGAGTTGGAACAGCTGAATCCAACGCCGGCGCCGTGTGCGGGCT
TCGACACACGGACGTCCAAGGTGGCGGGGGCATGGTCGCTGCTGTTCTCT
GATGCGCCGGATGTTACGCTGCTAGGAGCATTGCCTGGCGTCGAAATAGG
CACAGTGAAATCGGTGCAGCTGCGGCCCATGCAGCTTGCGGGCTTGGACA
TGTCCTTTGCACCAGCGCTGCGGGCAGCCTTTCCTACATTTGCGCAACGC
ACTGGCTGGTTCGACACTCTTTACGTGGACGATGACCTGTGGATAATTAT
GGCCAGCGATGGGAGCAATCTGCAGGCACTGGAGCAGCGGCTGCACCGCC
ACGGCCTGCCGCCGATGCTGCTGGTGCTGCTGCTGCGGTGCCGCCTGCTG
TCGCTGTCCCTGTTGCAACAGCAGCAGCAGTCCCTGGAGCAGCAGTACTG
CCTGCACCCGCAACAGCTTCGGCAGCGGTTGATGCTGCTGGAGCAGCTGC
GCCATGCGTCGCCGCTGCTGCTGCTGCTGTTGCTGCGGCAGCTGCAGCTG
CTGCCGCCGGAGGAGTTAGGCTGTGCTGCCGCTGCTGGTAGTGCAGCTTA
G