Trimin1|339622|MIX48385_10_11 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|339622
Unique Name	Trimin1\|339622\|MIX48385_10_11
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	975

Homology

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BLAST of jgi.p|Trimin1|339622 vs. uniprot
Match: A0A835YPX3_9STRA (TBC1 domain family member 23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPX3_9STRA)

HSP 1 Score: 1258 bits (3254), Expect = 0.000e+0
Identity = 974/974 (100.00%), Postives = 974/974 (100.00%), Query Frame = 0

Query:    1 MEEDVGEDPEMPFGGGGAVLEALDRPVPSRDDINLGLNEFLQKEDQRVLAHNFKFRQVFANIWLLNGXXXXXXXXXXXXXXADLRRTRQTYPAFKTQEVQDLVSEXXXXXXXXXLQNYCVRRGAGYKQGLNELLAPLVALRDPPLPAAPLGLMFESLVETFARWYRDDGGELVALQRAFRLLTLISKPIDAFTAYSXXXXXXXXXXXXXXXXXXQPAXXXXXXXXXXXXXXRAFRLFRVLLLHADPALALRLDACDMPPALYAAPWLLTLFSRNLELPLRCMEGDACIAAESDVRTAWDCLLALGDPAVXXXXXXXXXXXXXXXXXAALLLHARAQLMGVDRAVAVTTLADAETLLASAQRLRASLPRAFLHALRECVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAFTAAXXXXXXXXALLCEAVDCACMSPDELLRALGAREGGDGXXXXXXXXGGRCFLEVGEGGGGGALVVVDLRPEGEAQRSGAGVLPKAVPVDPASLRVPELASAWLQASRGRRFVLIRGTPPSSARAYSEDLTRAAPTFDAHRGSRVCLVDSSPRAPRPARRQLWRRLLLGEGDGEDGDYDEPESPGPQERDGHYAAAAALAQLLQRAGFPRVTVLEGGFDALPLRLAAWRSQAAAAXXXXXXXPAAVDMEPIIINHNPALFKRPDPGETGREGGGHGEHLQGVAAAGVGAYRAALQRAERQGHTAAAAQIRAKLQAAMRSQAAAPPGPDGSPSMRPXXXXXXXXXXXXXXXXXXXXKPYAASVRTXXXXXXXXXXXXXXXXXXXXSPRAHSADIAASSRSGSVGXXWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVMATAVLNKAEAWLAGADRWVGEVVAGAREAXXXXXXXXXXXXXXXXXXMLGESQVPLELYDDLAI 974
            MEEDVGEDPEMPFGGGGAVLEALDRPVPSRDDINLGLNEFLQKEDQRVLAHNFKFRQVFANIWLLNGXXXXXXXXXXXXXXADLRRTRQTYPAFKTQEVQDLVSEXXXXXXXXXLQNYCVRRGAGYKQGLNELLAPLVALRDPPLPAAPLGLMFESLVETFARWYRDDGGELVALQRAFRLLTLISKPIDAFTAYSXXXXXXXXXXXXXXXXXXQPAXXXXXXXXXXXXXXRAFRLFRVLLLHADPALALRLDACDMPPALYAAPWLLTLFSRNLELPLRCMEGDACIAAESDVRTAWDCLLALGDPAVXXXXXXXXXXXXXXXXXAALLLHARAQLMGVDRAVAVTTLADAETLLASAQRLRASLPRAFLHALRECVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAFTAAXXXXXXXXALLCEAVDCACMSPDELLRALGAREGGDGXXXXXXXXGGRCFLEVGEGGGGGALVVVDLRPEGEAQRSGAGVLPKAVPVDPASLRVPELASAWLQASRGRRFVLIRGTPPSSARAYSEDLTRAAPTFDAHRGSRVCLVDSSPRAPRPARRQLWRRLLLGEGDGEDGDYDEPESPGPQERDGHYAAAAALAQLLQRAGFPRVTVLEGGFDALPLRLAAWRSQAAAAXXXXXXXPAAVDMEPIIINHNPALFKRPDPGETGREGGGHGEHLQGVAAAGVGAYRAALQRAERQGHTAAAAQIRAKLQAAMRSQAAAPPGPDGSPSMRPXXXXXXXXXXXXXXXXXXXXKPYAASVRTXXXXXXXXXXXXXXXXXXXXSPRAHSADIAASSRSGSVGXXWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVMATAVLNKAEAWLAGADRWVGEVVAGAREAXXXXXXXXXXXXXXXXXXMLGESQVPLELYDDLAI
Sbjct:    1 MEEDVGEDPEMPFGGGGAVLEALDRPVPSRDDINLGLNEFLQKEDQRVLAHNFKFRQVFANIWLLNGXXXXXXXXXXXXXXADLRRTRQTYPAFKTQEVQDLVSEXXXXXXXXXLQNYCVRRGAGYKQGLNELLAPLVALRDPPLPAAPLGLMFESLVETFARWYRDDGGELVALQRAFRLLTLISKPIDAFTAYSXXXXXXXXXXXXXXXXXXQPAXXXXXXXXXXXXXXRAFRLFRVLLLHADPALALRLDACDMPPALYAAPWLLTLFSRNLELPLRCMEGDACIAAESDVRTAWDCLLALGDPAVXXXXXXXXXXXXXXXXXAALLLHARAQLMGVDRAVAVTTLADAETLLASAQRLRASLPRAFLHALRECVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAFTAAXXXXXXXXALLCEAVDCACMSPDELLRALGAREGGDGXXXXXXXXGGRCFLEVGEGGGGGALVVVDLRPEGEAQRSGAGVLPKAVPVDPASLRVPELASAWLQASRGRRFVLIRGTPPSSARAYSEDLTRAAPTFDAHRGSRVCLVDSSPRAPRPARRQLWRRLLLGEGDGEDGDYDEPESPGPQERDGHYAAAAALAQLLQRAGFPRVTVLEGGFDALPLRLAAWRSQAAAAXXXXXXXPAAVDMEPIIINHNPALFKRPDPGETGREGGGHGEHLQGVAAAGVGAYRAALQRAERQGHTAAAAQIRAKLQAAMRSQAAAPPGPDGSPSMRPXXXXXXXXXXXXXXXXXXXXKPYAASVRTXXXXXXXXXXXXXXXXXXXXSPRAHSADIAASSRSGSVGXXWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVMATAVLNKAEAWLAGADRWVGEVVAGAREAXXXXXXXXXXXXXXXXXXMLGESQVPLELYDDLAI 974

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BLAST of jgi.p|Trimin1|339622 vs. uniprot
Match: A0A7S3YFA6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFA6_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 4.170e-15
Identity = 67/226 (29.65%), Postives = 90/226 (39.82%), Query Frame = 0

Query:   82 ADLRRTRQTYPAFKTQEVQDLVSEXXXXXXXXXLQNYCVRRGAGYKQGLNELLAPLVALRDPPLPAAPLGLMFESLVETFARWYRDDGGELVALQRAFRLLTLISKPIDAFTAYSXXXXXXXXXXXXXXXXXXQPAXXXXXXXXXXXXXXRAFRLFRVLLLHADPALALRLDACDMPPALYAAPWLLTLFSRNLELPLRCMEGDACIAAESDVRTAWDCLLALGDP 307
            AD++RTR+  P F+ ++ Q  + +         L  +C++R   YKQGLNE+LAP   L +PPLP   +  +FE+ V+ +         E+  L   F  L                                                 RAF LF +LL + DPALA  L      P LYA PW+LTLFSR L + L              V   WD LL   DP
Sbjct:   13 ADVKRTRRDLPLFQKEKTQASLEKL--------LIQWCIQRQTSYKQGLNEVLAPFYTLAEPPLPEELIYKLFEAFVKRYL--------EVFLLDDDFGCLR------------------------------------------------RAFALFELLLAYHDPALARHLAGAGFTPELYATPWILTLFSRQLAVGL--------------VLRLWDTLLGADDP 160

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BLAST of jgi.p|Trimin1|339622 vs. uniprot
Match: A0A2R5GE11_9STRA (TBC1 domain family member 23 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GE11_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.150e-13
Identity = 69/212 (32.55%), Postives = 90/212 (42.45%), Query Frame = 0

Query:   83 DLRRTRQTYPAFKTQEVQDLVSEXXXXXXXXXLQNYCVRRGAGYKQGLNELLAPLVALR-DPPLPAAPLGLMFESLVETFARWYRDDGGELVALQRAFRLLTLISKPIDAFTAYSXXXXXXXXXXXXXXXXXXQPAXXXXXXXXXXXXXXRAFRLFRVLLLHADPALALRLDACDMPPALYAAPWLLTLFSRNLELPLRCMEGDACIAAESD 293
            D +RTR     F+T+E+Q LVS          L  YC R+G  YKQGLNE+LAP + LR DPPLP   +  MF + +E F             L  +F     + +   A                                         +FRLFR+LLL+ DP L   LD   + P LYA PW LTLF+RN+ L +     D  +  E D
Sbjct:  931 DAQRTRADVEIFRTEEMQLLVSRL--------LTFYCKRKGIKYKQGLNEVLAPFIMLRRDPPLPDGTVFNMFYAFIERF-------------LPHSF-----VHEDFHALQC--------------------------------------SFRLFRLLLLYHDPELCNFLDTHSLSPELYATPWFLTLFARNVPLKVLYQLWDTYLLEEED 1078

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|339622 vs. uniprot

BLAST of jgi.p|Trimin1|339622 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835YPX3_9STRA	0.000e+0	100.00	TBC1 domain family member 23 n=1 Tax=Tribonema min...	[more]
A0A7S3YFA6_HETAK	4.170e-15	29.65	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A2R5GE11_9STRA	1.150e-13	32.55	TBC1 domain family member 23 n=1 Tax=Hondaea ferme...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000195	Rab-GTPase-TBC domain	SMART	SM00164	tbc_4	coord: 33..341 e-value: 0.0043 score: -9.2
IPR000195	Rab-GTPase-TBC domain	PROSITE	PS50086	TBC_RABGAP	coord: 53..291 score: 12.933356
None	No IPR available	GENE3D	1.10.8.270	putative rabgap domain of human tbc1 domain family member 14 like domains	coord: 66..198 e-value: 5.3E-5 score: 25.2
None	No IPR available	GENE3D	1.10.472.80		coord: 228..372 e-value: 1.4E-14 score: 56.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 686..705
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 880..902
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 726..848
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 595..615
IPR039755	TBC1 domain family member 23	PANTHER	PTHR13297	UNCHARACTERIZED	coord: 77..379
IPR001763	Rhodanese-like domain	PROSITE	PS50206	RHODANESE_3	coord: 621..652 score: 9.378099
IPR035969	Rab-GTPase-TBC domain superfamily	SUPERFAMILY	47923	Ypt/Rab-GAP domain of gyp1p	coord: 229..349
IPR035969	Rab-GTPase-TBC domain superfamily	SUPERFAMILY	47923	Ypt/Rab-GAP domain of gyp1p	coord: 69..142

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_97	contig	Contig_97:400167..411104 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|339622	mRNA_14229	Tribonema minus UTEX_B_3156	mRNA	Contig_97 400137..411104 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|339622|MIX48385_10_11 ID=Trimin1|339622|MIX48385_10_11|Name=jgi.p|Trimin1|339622|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=975bp
MEEDVGEDPEMPFGGGGAVLEALDRPVPSRDDINLGLNEFLQKEDQRVLA
HNFKFRQVFANIWLLNGLSEFLQKEDQRVLAADLRRTRQTYPAFKTQEVQ
DLVSEEVQDLVSEVLQNYCVRRGAGYKQGLNELLAPLVALRDPPLPAAPL
GLMFESLVETFARWYRDDGGELVALQRAFRLLTLISKPIDAFTAYSLLTA
ARWYCDADGELVALQPARWYCDEDGELVALQRAFRLFRVLLLHADPALAL
RLDACDMPPALYAAPWLLTLFSRNLELPLRCMEGDACIAAESDVRTAWDC
LLALGDPAVWDCLLALGDPAFVSCLLAALLLHARAQLMGVDRAVAVTTLA
DAETLLASAQRLRASLPRAFLHALRECVREAPHAASPSGSPRGAAAGAAF
SGSGGGSGGTGGGGGGSGAGSFAFTAAAAAGGGGGALLCEAVDCACMSPD
ELLRALGAREGGDGGGEAGGLSGGRCFLEVGEGGGGGALVVVDLRPEGEA
QRSGAGVLPKAVPVDPASLRVPELASAWLQASRGRRFVLIRGTPPSSARA
YSEDLTRAAPTFDAHRGSRVCLVDSSPRAPRPARRQLWRRLLLGEGDGED
GDYDEPESPGPQERDGHYAAAAALAQLLQRAGFPRVTVLEGGFDALPLRL
AAWRSQAAAAAAAAGAAPAAVDMEPIIINHNPALFKRPDPGETGREGGGH
GEHLQGVAAAGVGAYRAALQRAERQGHTAAAAQIRAKLQAAMRSQAAAPP
GPDGSPSMRPPPRHGNHHHAAAAAAAAAHHKPYAASVRTRARNRSSHSDA
GGGGGAGAASPRAHSADIAASSRSGSVGGGWRSPRRGSSAVPPRSPRSSA
AAPAAAAAAAAAAAAAAAAAAAAQSGDQPPQAAAAVESPAARRGSFLQRS
GSGGGSGGVMATAVLNKAEAWLAGADRWVGEVVAGAREAAAAAVAGGGGG
VEGGGGGMLGESQVPLELYDDLAI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000195	Rab-GTPase-TBC_dom
IPR039755	TBC1D23
IPR001763	Rhodanese-like_dom
IPR035969	Rab-GTPase_TBC_sf