Trimin1|336265|MIX45028_2_13 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|336265
Unique NameTrimin1|336265|MIX45028_2_13
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length395
Homology
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BLAST of jgi.p|Trimin1|336265 vs. uniprot
Match: A0A836C8Y6_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Y6_9STRA)

HSP 1 Score: 557 bits (1436), Expect = 7.880e-197
Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 0 
Query:    1 MNDGGANFTPSCVSCLQPISEDSGLLLSCQHFICGGCAATASRAQCPACADVPVDAVPLSSLPVEVGMYMQQPPQILQMVGEVWSFQASHYQATIANMRAALGEVTQAVGGLQGQVASLQRGVNSEMELRKRAEAENQALRQQLAQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPQQRPQSAHPQDNFSRPGTAQXXXXXXXXXRSSPPKPRXXXXXPSSGSAGGGGSRGDAFSSGRPGSRGSEMGHPGAAPRTPLGVVRGSNALGSSSPLSLGSPTTRLRSTQLPYARTGSGGAXXXXXXXXXXLARLRSPPSLQRPSTXXXXXXXXXXXXXXXXXXXXXXXXXXGLMSRPGTAASSANGSLGMGAMRGIGAPVSRRPGSSMPSTW 394
            MNDGGANFTPSCVSCLQPISEDSGLLLSCQHFICGGCAATASRAQCPACADVPVDAVPLSSLPVEVGMYMQQPPQILQMVGEVWSFQASHYQATIANMRAALGEVTQAVGGLQGQVASLQRGVNSEMELRKRAEAENQALRQQLAQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPQQRPQSAHPQDNFSRPGTAQXXXXXXXXXRSSPPKPRXXXXXPSSGSAGGGGSRGDAFSSGRPGSRGSEMGHPGAAPRTPLGVVRGSNALGSSSPLSLGSPTTRLRSTQLPYARTGSGGAXXXXXXXXXXLARLRSPPSLQRPSTXXXXXXXXXXXXXXXXXXXXXXXXXXGLMSRPGTAASSANGSLGMGAMRGIGAPVSRRPGSSMPSTW
Sbjct:    1 MNDGGANFTPSCVSCLQPISEDSGLLLSCQHFICGGCAATASRAQCPACADVPVDAVPLSSLPVEVGMYMQQPPQILQMVGEVWSFQASHYQATIANMRAALGEVTQAVGGLQGQVASLQRGVNSEMELRKRAEAENQALRQQLAQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPQQRPQSAHPQDNFSRPGTAQXXXXXXXXXRSSPPKPRXXXXXPSSGSAGGGGSRGDAFSSGRPGSRGSEMGHPGAAPRTPLGVVRGSNALGSSSPLSLGSPTTRLRSTQLPYARTGSGGAXXXXXXXXXXLARLRSPPSLQRPSTXXXXXXXXXXXXXXXXXXXXXXXXXXGLMSRPGTAASSANGSLGMGAMRGIGAPVSRRPGSSMPSTW 394
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|336265 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C8Y6_9STRA7.880e-197100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 123..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..394
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..296
NoneNo IPR availablePANTHERPTHR22663:SF17IP08077Pcoord: 11..227
NoneNo IPR availableCDDcd16449RING-HCcoord: 12..49
e-value: 6.89725E-4
score: 35.1357
IPR001841Zinc finger, RING-typePFAMPF14634zf-RING_5coord: 12..50
e-value: 3.6E-8
score: 33.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 12..49
score: 9.996021
IPR042123Zip3/RNF212-likePANTHERPTHR22663UNCHARACTERIZEDcoord: 11..227
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 29..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_82contigContig_82:595082..596392 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|336265mRNA_10999Tribonema minus UTEX_B_3156 mRNAContig_82 595082..596414 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|336265|MIX45028_2_13 ID=Trimin1|336265|MIX45028_2_13|Name=jgi.p|Trimin1|336265|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=395bp
MNDGGANFTPSCVSCLQPISEDSGLLLSCQHFICGGCAATASRAQCPACA
DVPVDAVPLSSLPVEVGMYMQQPPQILQMVGEVWSFQASHYQATIANMRA
ALGEVTQAVGGLQGQVASLQRGVNSEMELRKRAEAENQALRQQLAQLQQQ
QQRQQHHFRPATAAQLYQQQHGGRQHHQQQGPQQRPQSAHPQDNFSRPGT
AQQQQQQRPVSRSSPPKPRSPYTRPSSGSAGGGGSRGDAFSSGRPGSRGS
EMGHPGAAPRTPLGVVRGSNALGSSSPLSLGSPTTRLRSTQLPYARTGSG
GAGASDGSGGGGLARLRSPPSLQRPSTSAGGGGMPRPGSHGSGGGGGGGG
SGGGLMSRPGTAASSANGSLGMGAMRGIGAPVSRRPGSSMPSTW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR042123Zip3/RNF212-like
IPR017907Znf_RING_CS