Trimin1|335969|MIX44732_17_20 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|335969
Unique NameTrimin1|335969|MIX44732_17_20
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length1326
Homology
BLAST of jgi.p|Trimin1|335969 vs. uniprot
Match: A0A835YJ59_9STRA (V-SNARE coiled-coil homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ59_9STRA)

HSP 1 Score: 1924 bits (4983), Expect = 0.000e+0
Identity = 1325/1325 (100.00%), Postives = 1325/1325 (100.00%), Query Frame = 0
Query:    1 MHPLKLGRDLKSARAIVDKHIAEPIKQAIAPSHRKRGRVGSDEATPAKLLACFSAPPLLFGHRGIPDGTIALALEPQTGLLALAASDGTVKVIGGPGIEVLLEPTRSEGEATRAAPTMLGFVDPNTLAGADADGRLWVWDVTGAGAQTGHLTPLVWSTGVTITAFAVAGATASGYVLLGTSAGAVHAVECAQCNLSAHSITAQDAGFPQSLLDQGVPGAVTAIACNPCEPACVLIGYAYGGAVVWDWARRAKRVLCEPSGASSXXXXXXXXXXXXXXXXTALTCLAWHPKGKAFAVGFANGRYAIFDERTPDAPLRVLRAAAAAPAAGPIARRPVTHLQWLRTRHGAAKTWVLAAAGGSDAAARDGVAFLVARGRGGAFGAATELACAAVAELCGDGERCLTAAVWMSADDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRTLEEGDEAQHAAEVAAAVTSGKRRGAVRTASLVSRAPGTVEVVDATSTSTTTLPRWPSPLAFAAPISAVAISPPLPTSMIVRLAAAGPMQCGGSSGGGAGAHPQRGGLDTLPSADAGAETVSELVAVGHADGTLTLWHAFAPLPLRARPAAAYAEPLLHTHALGSAHMELIAALPACTLRGGSAAAXXXXXXXXXXXXXPVTALGFADAGAAGGLLLGVGFGDGVAALLRIGGSGGSSGADSGALPPPTARIRLPHKALSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAALAAEAPSPKALSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARVSPWWAAATGPLLAVAYSDGTAAAARAHGAAVHMLSAADRPCATQLAWARSSGXXXXXXXXXAVLCALQPWRVRAYDAATWSLLSDAAVDFDLDAAAAAADDAPCALLCVGADGAPERCCAAATDCGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGNMPALQQQQGAAAALPEHCRLVACSSTRVALIRLVREPGKPARAEVEALNSVAXXXXXXXXXXXXXXXXXXXXGIIAVRCGSAPPLHCVACAGADSTVSVFLLPSLTHILSSTVPPHCCLSISAWGETVGASAGTRALRRCALVAPQRHAARGGGGALPRLATAAALRPVEPADLSAAAGWRDRLLGRRRSDQVARVRQLLDEATTPPPPPLSXXXXXXXXXXXXXXXXXXXXXXRDASGAXXKGXAAAQHGAKAELFSGRSRGAAXXXXXXXXXXXXXXXXXXXXAAGVQSRIAEAAALARERGERLNCMQEKTEALQSDAADFASMAAQLNREMDKQAECSVS 1325
            MHPLKLGRDLKSARAIVDKHIAEPIKQAIAPSHRKRGRVGSDEATPAKLLACFSAPPLLFGHRGIPDGTIALALEPQTGLLALAASDGTVKVIGGPGIEVLLEPTRSEGEATRAAPTMLGFVDPNTLAGADADGRLWVWDVTGAGAQTGHLTPLVWSTGVTITAFAVAGATASGYVLLGTSAGAVHAVECAQCNLSAHSITAQDAGFPQSLLDQGVPGAVTAIACNPCEPACVLIGYAYGGAVVWDWARRAKRVLCEPSGASSXXXXXXXXXXXXXXXXTALTCLAWHPKGKAFAVGFANGRYAIFDERTPDAPLRVLRAAAAAPAAGPIARRPVTHLQWLRTRHGAAKTWVLAAAGGSDAAARDGVAFLVARGRGGAFGAATELACAAVAELCGDGERCLTAAVWMSADDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRTLEEGDEAQHAAEVAAAVTSGKRRGAVRTASLVSRAPGTVEVVDATSTSTTTLPRWPSPLAFAAPISAVAISPPLPTSMIVRLAAAGPMQCGGSSGGGAGAHPQRGGLDTLPSADAGAETVSELVAVGHADGTLTLWHAFAPLPLRARPAAAYAEPLLHTHALGSAHMELIAALPACTLRGGSAAAXXXXXXXXXXXXXPVTALGFADAGAAGGLLLGVGFGDGVAALLRIGGSGGSSGADSGALPPPTARIRLPHKALSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAALAAEAPSPKALSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARVSPWWAAATGPLLAVAYSDGTAAAARAHGAAVHMLSAADRPCATQLAWARSSGXXXXXXXXXAVLCALQPWRVRAYDAATWSLLSDAAVDFDLDAAAAAADDAPCALLCVGADGAPERCCAAATDCGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGNMPALQQQQGAAAALPEHCRLVACSSTRVALIRLVREPGKPARAEVEALNSVAXXXXXXXXXXXXXXXXXXXXGIIAVRCGSAPPLHCVACAGADSTVSVFLLPSLTHILSSTVPPHCCLSISAWGETVGASAGTRALRRCALVAPQRHAARGGGGALPRLATAAALRPVEPADLSAAAGWRDRLLGRRRSDQVARVRQLLDEATTPPPPPLSXXXXXXXXXXXXXXXXXXXXXXRDASGAXXKGXAAAQHGAKAELFSGRSRGAAXXXXXXXXXXXXXXXXXXXXAAGVQSRIAEAAALARERGERLNCMQEKTEALQSDAADFASMAAQLNREMDKQAECSVS
Sbjct:    1 MHPLKLGRDLKSARAIVDKHIAEPIKQAIAPSHRKRGRVGSDEATPAKLLACFSAPPLLFGHRGIPDGTIALALEPQTGLLALAASDGTVKVIGGPGIEVLLEPTRSEGEATRAAPTMLGFVDPNTLAGADADGRLWVWDVTGAGAQTGHLTPLVWSTGVTITAFAVAGATASGYVLLGTSAGAVHAVECAQCNLSAHSITAQDAGFPQSLLDQGVPGAVTAIACNPCEPACVLIGYAYGGAVVWDWARRAKRVLCEPSGASSXXXXXXXXXXXXXXXXTALTCLAWHPKGKAFAVGFANGRYAIFDERTPDAPLRVLRAAAAAPAAGPIARRPVTHLQWLRTRHGAAKTWVLAAAGGSDAAARDGVAFLVARGRGGAFGAATELACAAVAELCGDGERCLTAAVWMSADDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRTLEEGDEAQHAAEVAAAVTSGKRRGAVRTASLVSRAPGTVEVVDATSTSTTTLPRWPSPLAFAAPISAVAISPPLPTSMIVRLAAAGPMQCGGSSGGGAGAHPQRGGLDTLPSADAGAETVSELVAVGHADGTLTLWHAFAPLPLRARPAAAYAEPLLHTHALGSAHMELIAALPACTLRGGSAAAXXXXXXXXXXXXXPVTALGFADAGAAGGLLLGVGFGDGVAALLRIGGSGGSSGADSGALPPPTARIRLPHKALSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAALAAEAPSPKALSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARVSPWWAAATGPLLAVAYSDGTAAAARAHGAAVHMLSAADRPCATQLAWARSSGXXXXXXXXXAVLCALQPWRVRAYDAATWSLLSDAAVDFDLDAAAAAADDAPCALLCVGADGAPERCCAAATDCGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGNMPALQQQQGAAAALPEHCRLVACSSTRVALIRLVREPGKPARAEVEALNSVAXXXXXXXXXXXXXXXXXXXXGIIAVRCGSAPPLHCVACAGADSTVSVFLLPSLTHILSSTVPPHCCLSISAWGETVGASAGTRALRRCALVAPQRHAARGGGGALPRLATAAALRPVEPADLSAAAGWRDRLLGRRRSDQVARVRQLLDEATTPPPPPLSXXXXXXXXXXXXXXXXXXXXXXRDASGAXXKGXAAAQHGAKAELFSGRSRGAAXXXXXXXXXXXXXXXXXXXXAAGVQSRIAEAAALARERGERLNCMQEKTEALQSDAADFASMAAQLNREMDKQAECSVS 1325          
BLAST of jgi.p|Trimin1|335969 vs. uniprot
Match: UPI0010BD6A76 (syntaxin-binding protein 5 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0010BD6A76)

HSP 1 Score: 68.9 bits (167), Expect = 7.030e-8
Identity = 67/258 (25.97%), Postives = 107/258 (41.47%), Query Frame = 0
Query:   62 HRGIPDGTIALALEPQTGLLALAASDGTVKVIGGPGIEVLLEPTRSEGEATRAAPTMLGF-VDPNTLAGADADGRLWVWDVTGAGAQTGHLTPLVWSTGVTITAFAVAGATASGYVLLGTSAGAVHAVECAQCNLSAHSITAQDAGFPQSLLDQGVPGAVTAIACNPCEPACVLIGYAYGGAVVWDWARRAKRVLCEPSGASSXXXXXXXXXXXXXXXXTALTCLAWHPKGKAFAVGFANGRYAIFDERTPDAPLRVL 318
              G P    A+A +P   L+A+   +G++K++G PG+EV  +          +A   L F V+   L    AD  +  W++     QT  +   +      IT   +     S ++ LGT  G VH V     +LS + I    A     +  +  PGAV  +  NP +P  +LI +  G  V+WD   R   V  + +                      L+ ++WH +GK F    A+G   +F+ R P  PL V+
Sbjct:   57 RHGFPHNPSAVAYDPIQRLIAIGTHNGSIKILGRPGVEVFFQ------HVLNSAVVQLQFIVNEGLLLSLCADDSVHQWNIK---TQTPEVVHTLKFQKERITYMYLP--FQSKWLYLGTEGGNVHLVNVDTFSLSGYVINWNKA---IEITRKTKPGAVVHLCENPADPNKLLIAFETGTIVLWDLRSRMAEVRFQHN--------------------EPLSSVSWHFEGKQFLASHADGSLTVFNIRNPGKPLSVM 280          
BLAST of jgi.p|Trimin1|335969 vs. uniprot
Match: E0VQS5_PEDHC (Lethal giant larvae, putative n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VQS5_PEDHC)

HSP 1 Score: 67.4 bits (163), Expect = 2.030e-7
Identity = 77/286 (26.92%), Postives = 116/286 (40.56%), Query Frame = 0
Query:   62 HRGIPDGTIALALEPQTGLLALAASDGTVKVIGGPGIEVLLEPTRSEGEATRAAPTMLGFVDPNTLAGADADGRLWVWDVTGAGAQTGHLTPLVWSTGVTITAFAVAGATASGYVLLGTSAGAVHAVECAQCNLSAHSITAQDA---GFPQSLLDQGVPGAVTAIACNPCEPACVLIGYAYGGAVVWDWARRA-KRVLCEPSGASSXXXXXXXXXXXXXXXXTALTCLAWHPKGKAFAVGFANGRYAIFDERTPDAPLRVLRAAAAAPAAGPIARRPVTHLQWLRT 343
            H G P+   ALA +P+  LLA++ ++GT+KVIG PG+E        +  A      +L   +   L     +  L +W++   G      + +       I+A  +   ++   +LLGT  G V+ +      +   SI   D      P S      PGAV AIA  P  P  +LIGY  G  V+WD +  + K++   P                       L CL W   G  FA    +G YA +D  + D P+            GP   +P+T L W+ T
Sbjct:   31 HHGFPNKPTALAWDPELKLLAISTTNGTLKVIGKPGVEFY-----GQHHADGTVIKILFVPNQGRLITLCDNNSLHLWEIND-GCLAEVKSQVFEGKLKKISAMCID--SSKELLLLGTEGGNVYFLNLKTFQML-DSIIYVDIVMQNLPSSYKITN-PGAVEAIAEQPGNPNHILIGYTRGLIVLWDNSNPSNKKIFMNPQ---------------------QLECLCWFSNGTKFASSHNDGSYAFWDVESEDKPVEEPTTLY-----GPFPCKPITKLLWVET 280          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|335969 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YJ59_9STRA0.000e+0100.00V-SNARE coiled-coil homology domain-containing pro... [more]
UPI0010BD6A767.030e-825.97syntaxin-binding protein 5 n=1 Tax=Galendromus occ... [more]
E0VQS5_PEDHC2.030e-726.92Lethal giant larvae, putative n=1 Tax=Pediculus hu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.5.110coord: 1259..1316
e-value: 4.6E-9
score: 38.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1178..1203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 955..989
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 553..572
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1184..1201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 698..795
NoneNo IPR availablePANTHERPTHR10241:SF25TOMOSYN, ISOFORM Ccoord: 62..602
NoneNo IPR availablePANTHERPTHR10241LETHAL 2 GIANT LARVAE PROTEINcoord: 62..602
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 1267..1316
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 58..366
e-value: 2.1E-13
score: 51.9
IPR042855v-SNARE, coiled-coil homology domainPROSITEPS50892V_SNAREcoord: 1259..1319
score: 9.31354
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 63..599

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_81contigContig_81:279268..283245 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|335969mRNA_9766Tribonema minus UTEX_B_3156 mRNAContig_81 279268..283245 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|335969|MIX44732_17_20 ID=Trimin1|335969|MIX44732_17_20|Name=jgi.p|Trimin1|335969|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1326bp
MHPLKLGRDLKSARAIVDKHIAEPIKQAIAPSHRKRGRVGSDEATPAKLL
ACFSAPPLLFGHRGIPDGTIALALEPQTGLLALAASDGTVKVIGGPGIEV
LLEPTRSEGEATRAAPTMLGFVDPNTLAGADADGRLWVWDVTGAGAQTGH
LTPLVWSTGVTITAFAVAGATASGYVLLGTSAGAVHAVECAQCNLSAHSI
TAQDAGFPQSLLDQGVPGAVTAIACNPCEPACVLIGYAYGGAVVWDWARR
AKRVLCEPSGASSSGSGGGGGGGGSGGGGTALTCLAWHPKGKAFAVGFAN
GRYAIFDERTPDAPLRVLRAAAAAPAAGPIARRPVTHLQWLRTRHGAAKT
WVLAAAGGSDAAARDGVAFLVARGRGGAFGAATELACAAVAELCGDGERC
LTAAVWMSADDGGGGVEFTAVALVGGGSSGGGGADALSAAAGDGGGGDAP
VLSAAGGHRTLEEGDEAQHAAEVAAAVTSGKRRGAVRTASLVSRAPGTVE
VVDATSTSTTTLPRWPSPLAFAAPISAVAISPPLPTSMIVRLAAAGPMQC
GGSSGGGAGAHPQRGGLDTLPSADAGAETVSELVAVGHADGTLTLWHAFA
PLPLRARPAAAYAEPLLHTHALGSAHMELIAALPACTLRGGSAAAGAAVA
DAAAAAAAPVTALGFADAGAAGGLLLGVGFGDGVAALLRIGGSGGSSGAD
SGALPPPTARIRLPHKALSPKAHSPKPRSPKLLSPKRLSPKASSPKNATP
KAASLAALAAEAPSPKALSQPPPQASDDIAAAATGALHDPPPPAPPDAAT
AAAYCAVLAVVTGGASSVARVSPWWAAATGPLLAVAYSDGTAAAARAHGA
AVHMLSAADRPCATQLAWARSSGGGSSSGGGGAVLCALQPWRVRAYDAAT
WSLLSDAAVDFDLDAAAAAADDAPCALLCVGADGAPERCCAAATDCGDGD
GGSGGAAGGDSDGSDGGGDDDDDDGGDMPGNMPALQQQQGAAAALPEHCR
LVACSSTRVALIRLVREPGKPARAEVEALNSVASASSAAAAAAPAAAASA
AAAGIIAVRCGSAPPLHCVACAGADSTVSVFLLPSLTHILSSTVPPHCCL
SISAWGETVGASAGTRALRRCALVAPQRHAARGGGGALPRLATAAALRPV
EPADLSAAAGWRDRLLGRRRSDQVARVRQLLDEATTPPPPPLSPPLSPAL
APRPAAAAAAAAAAARDASGAARKGSAAAQHGAKAELFSGRSRGAAAAEG
GGGARRRESAAAAEGGAAGVQSRIAEAAALARERGERLNCMQEKTEALQS
DAADFASMAAQLNREMDKQAECSVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR042855V_SNARE_CC
IPR036322WD40_repeat_dom_sf