Trimin1|335895|MIX44658_6_22 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|335895
Unique Name	Trimin1\|335895\|MIX44658_6_22
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	575

Homology

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BLAST of jgi.p|Trimin1|335895 vs. uniprot
Match: A0A835YKF8_9STRA (TRAF-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKF8_9STRA)

HSP 1 Score: 847 bits (2189), Expect = 1.750e-305
Identity = 574/574 (100.00%), Postives = 574/574 (100.00%), Query Frame = 0

Query:    1 MTVDAAAEQAPTPRDKQQQQLTVWRQGKVSSHVQQLWSAARIPLLLSGLTRHRADPEDNLHAASPPAHAYSSERGDDKRRLGPVRQTSYTLGKTSRARAKPLHEWAGPKPGAAAGQATGQGNLLNSSSGVSAXXXXXXXXXXXXXXASTHLPVALPSPFSGDKDLARLCVPLPRLADNAANSGAATFGHAPGSPLRSLAYPSGVVMLFPPPPEQPSQGRIATGSWAAPDQAEPQVNDTLERSDDIMADITPDAEEVCERCGSGIPAPLMRAHVRSSCRLLPCDACAALLLPRDHARHSHTDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCPLGCGAAVRAAAAXXXXXXXXXXXXXXXXXXXXXXXXXAAHLASCEAFLDAWEGALERLRRGRSRAALARAVVRLARGVXXXXXXXXXXXXXXXXXAGAAHVRLEGAGYRAEIEAVAGMVNVGRLLKGLRRKGGRAAVWQVEGDDDDAISDPEEAPLVEGRAQQGGVEGEHGTAQQGLGGQRSTAGCDIVHHQTGDEEHASRQAVGEDEPQ 574
            MTVDAAAEQAPTPRDKQQQQLTVWRQGKVSSHVQQLWSAARIPLLLSGLTRHRADPEDNLHAASPPAHAYSSERGDDKRRLGPVRQTSYTLGKTSRARAKPLHEWAGPKPGAAAGQATGQGNLLNSSSGVSAXXXXXXXXXXXXXXASTHLPVALPSPFSGDKDLARLCVPLPRLADNAANSGAATFGHAPGSPLRSLAYPSGVVMLFPPPPEQPSQGRIATGSWAAPDQAEPQVNDTLERSDDIMADITPDAEEVCERCGSGIPAPLMRAHVRSSCRLLPCDACAALLLPRDHARHSHTDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCPLGCGAAVRAAAAXXXXXXXXXXXXXXXXXXXXXXXXXAAHLASCEAFLDAWEGALERLRRGRSRAALARAVVRLARGVXXXXXXXXXXXXXXXXXAGAAHVRLEGAGYRAEIEAVAGMVNVGRLLKGLRRKGGRAAVWQVEGDDDDAISDPEEAPLVEGRAQQGGVEGEHGTAQQGLGGQRSTAGCDIVHHQTGDEEHASRQAVGEDEPQ
Sbjct:    1 MTVDAAAEQAPTPRDKQQQQLTVWRQGKVSSHVQQLWSAARIPLLLSGLTRHRADPEDNLHAASPPAHAYSSERGDDKRRLGPVRQTSYTLGKTSRARAKPLHEWAGPKPGAAAGQATGQGNLLNSSSGVSAXXXXXXXXXXXXXXASTHLPVALPSPFSGDKDLARLCVPLPRLADNAANSGAATFGHAPGSPLRSLAYPSGVVMLFPPPPEQPSQGRIATGSWAAPDQAEPQVNDTLERSDDIMADITPDAEEVCERCGSGIPAPLMRAHVRSSCRLLPCDACAALLLPRDHARHSHTDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCPLGCGAAVRAAAAXXXXXXXXXXXXXXXXXXXXXXXXXAAHLASCEAFLDAWEGALERLRRGRSRAALARAVVRLARGVXXXXXXXXXXXXXXXXXAGAAHVRLEGAGYRAEIEAVAGMVNVGRLLKGLRRKGGRAAVWQVEGDDDDAISDPEEAPLVEGRAQQGGVEGEHGTAQQGLGGQRSTAGCDIVHHQTGDEEHASRQAVGEDEPQ 574

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|335895 vs. uniprot

BLAST of jgi.p|Trimin1|335895 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YKF8_9STRA	1.750e-305	100.00	TRAF-type domain-containing protein n=1 Tax=Tribon...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001293	Zinc finger, TRAF-type	PFAM	PF02176	zf-TRAF	coord: 325..374 e-value: 7.6E-6 score: 26.5
IPR001293	Zinc finger, TRAF-type	PROSITE	PS50145	ZF_TRAF	coord: 324..367 score: 10.338185
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 278..328 e-value: 4.1E-7 score: 31.9 coord: 329..386 e-value: 1.4E-9 score: 39.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 506..574
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 554..574
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..94

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_81	contig	Contig_81:167515..169560 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|335895	mRNA_9743	Tribonema minus UTEX_B_3156	mRNA	Contig_81 167515..169560 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|335895|MIX44658_6_22 ID=Trimin1|335895|MIX44658_6_22|Name=jgi.p|Trimin1|335895|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=575bp
MTVDAAAEQAPTPRDKQQQQLTVWRQGKVSSHVQQLWSAARIPLLLSGLT
RHRADPEDNLHAASPPAHAYSSERGDDKRRLGPVRQTSYTLGKTSRARAK
PLHEWAGPKPGAAAGQATGQGNLLNSSSGVSAVTAVTTHTTATASAASTH
LPVALPSPFSGDKDLARLCVPLPRLADNAANSGAATFGHAPGSPLRSLAY
PSGVVMLFPPPPEQPSQGRIATGSWAAPDQAEPQVNDTLERSDDIMADIT
PDAEEVCERCGSGIPAPLMRAHVRSSCRLLPCDACAALLLPRDHARHSHT
DCSRRPVPCARCGARINAQQYAQHSAQECPARPVRCAACNEFVTARDLSA
HAATRCAQRAVPCPLGCGAAVRAAAAAAEHCCGAAPPWRCACGAAVTLSA
RAAHLASCEAFLDAWEGALERLRRGRSRAALARAVVRLARGVGCGAAAAA
AALAEAEGDAGAAHVRLEGAGYRAEIEAVAGMVNVGRLLKGLRRKGGRAA
VWQVEGDDDDAISDPEEAPLVEGRAQQGGVEGEHGTAQQGLGGQRSTAGC
DIVHHQTGDEEHASRQAVGEDEPQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001293	Znf_TRAF
IPR013083	Znf_RING/FYVE/PHD