Trimin1|182220|e_gw1.399.1.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|182220
Unique NameTrimin1|182220|e_gw1.399.1.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length113
Homology
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A836CCL5_9STRA (KH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL5_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.050e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
Query:    1 MPAPTHPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEAMQXXXXXXXXGR 112
            MPAPTHPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEAMQXXXXXXXXGR
Sbjct:    1 MPAPTHPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEAMQXXXXXXXXGR 112          
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A836CIW2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIW2_9STRA)

HSP 1 Score: 135 bits (340), Expect = 4.020e-36
Identity = 91/112 (81.25%), Postives = 91/112 (81.25%), Query Frame = 0
Query:    1 MPAPTHPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEAMQXXXXXXXXGR 112
            MPAPTHPVAAAVAGAAAVTTITVSIPDNM                     TSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEAMQXXXXXXXXGR
Sbjct:  285 MPAPTHPVAAAVAGAAAVTTITVSIPDNM--------------------STSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEAMQXXXXXXXXGR 376          
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A6H5KLG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 5.940e-22
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 0
Query:    5 THPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQA 95
            T+PVAAA+A     TT+TV +P+NM+GAILG GGA I+ELQA     SGARINVSQR  F+PGT NR +TITG P A Q AQ+L++ +I+A
Sbjct:  608 TNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQA----LSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKIEA 694          
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A835ZEM4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEM4_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 3.400e-20
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 0
Query:    1 MPAPTHPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEAM 101
            MP   HP  +AVA     TTI VSIPD ++G ILGRGG T+NELQ      +GARI+VS+RG+ +PGT++R VTITGS AAA AAQ+++ HR+Q A ++ M
Sbjct:  619 MPMVQHPDVSAVA-----TTIMVSIPDALIGVILGRGGVTVNELQM----ITGARISVSRRGNALPGTTDRVVTITGSAAAAHAAQYMMMHRVQEACAQRM 710          
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: UPI000695E587 (RNA-binding protein Nova-2 n=1 Tax=Chinchilla lanigera TaxID=34839 RepID=UPI000695E587)

HSP 1 Score: 83.6 bits (205), Expect = 1.460e-18
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 0
Query:   21 ITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRI 93
            + +++P+N+VGAILG+GG T+ E Q      +GARI +S++G+F+PGT NR VTITGSPAA QAAQ+LI+ R+
Sbjct:   28 VEIAVPENLVGAILGKGGKTLVEYQ----ELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 96          
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A670XVA5_PSETE (KH domain-containing protein n=1 Tax=Pseudonaja textilis TaxID=8673 RepID=A0A670XVA5_PSETE)

HSP 1 Score: 84.7 bits (208), Expect = 1.600e-18
Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = 0
Query:   21 ITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRI 93
            + +++P+N+VGAILG+GG T+ E Q      +GARI +S++G+F+PGT NR VTITG+PAA QAAQ+LIT RI
Sbjct:   62 VEIAVPENLVGAILGKGGKTLVEYQ----ELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 130          
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A8C6YYB6_NOTPE (KH domain-containing protein n=1 Tax=Nothoprocta perdicaria TaxID=30464 RepID=A0A8C6YYB6_NOTPE)

HSP 1 Score: 84.7 bits (208), Expect = 4.430e-18
Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = 0
Query:   21 ITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRI 93
            + +++P+N+VGAILG+GG T+ E Q      +GARI +S++G+F+PGT NR VTITG+PAA QAAQ+LIT RI
Sbjct:   88 VEIAVPENLVGAILGKGGKTLVEYQ----ELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 156          
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A388LDU2_CHABU (Uncharacterized protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388LDU2_CHABU)

HSP 1 Score: 87.8 bits (216), Expect = 4.520e-18
Identity = 47/83 (56.63%), Postives = 63/83 (75.90%), Query Frame = 0
Query:   18 VTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEA 100
            +TT+TV++PD  VGAI+GR G TINE+Q    + S  RI +S+RGDF+ GT+NR VTITGS  A Q AQ+LIT ++Q +A+EA
Sbjct:  327 ITTVTVAVPDEHVGAIVGRSGKTINEIQ----QMSAVRIKISERGDFVQGTNNRKVTITGSAEAVQFAQYLITTKVQNSAAEA 405          
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A3B4YXF0_9TELE (RNA-binding protein Nova-1-like n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B4YXF0_9TELE)

HSP 1 Score: 87.4 bits (215), Expect = 5.550e-18
Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 0
Query:    6 HPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRI 93
            +P AAA     A   + +++P+N+VGAILG+GG T+ E Q      +GARI +S++G+FIPGT NR VTITGSPAA QAAQ+LI+ RI
Sbjct:  295 NPAAAAALADGAKDVVEIAVPENLVGAILGKGGKTLVEYQ----ELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLISQRI 378          
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A8B9CXC6_9AVES (KH domain-containing protein n=1 Tax=Anser brachyrhynchus TaxID=132585 RepID=A0A8B9CXC6_9AVES)

HSP 1 Score: 82.0 bits (201), Expect = 1.380e-17
Identity = 41/73 (56.16%), Postives = 57/73 (78.08%), Query Frame = 0
Query:   21 ITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRI 93
            + +++P+N+VGAILG+GG T+ E Q      +GARI +S++GDFIPGT +R VTITG PAA QAAQ+LI+ R+
Sbjct:   56 VEIAVPENLVGAILGKGGKTLVEYQ----ELTGARIQISKKGDFIPGTRSRRVTITGPPAATQAAQYLISQRV 124          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CCL5_9STRA1.050e-58100.00KH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A836CIW2_9STRA4.020e-3681.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KLG6_9PHAE5.940e-2260.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZEM4_9STRA3.400e-2055.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI000695E5871.460e-1856.16RNA-binding protein Nova-2 n=1 Tax=Chinchilla lani... [more]
A0A670XVA5_PSETE1.600e-1857.53KH domain-containing protein n=1 Tax=Pseudonaja te... [more]
A0A8C6YYB6_NOTPE4.430e-1857.53KH domain-containing protein n=1 Tax=Nothoprocta p... [more]
A0A388LDU2_CHABU4.520e-1856.63Uncharacterized protein n=2 Tax=Chara braunii TaxI... [more]
A0A3B4YXF0_9TELE5.550e-1854.55RNA-binding protein Nova-1-like n=1 Tax=Stegastes ... [more]
A0A8B9CXC6_9AVES1.380e-1756.16KH domain-containing protein n=1 Tax=Anser brachyr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 17..94
e-value: 6.8E-13
score: 58.8
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10K Homology domain, type 1coord: 16..97
e-value: 1.0E-22
score: 81.7
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 19..95
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 20..90
e-value: 2.1E-16
score: 59.5
NoneNo IPR availablePANTHERPTHR10288KH DOMAIN CONTAINING RNA BINDING PROTEINcoord: 17..103
NoneNo IPR availablePANTHERPTHR10288:SF261PASILLA, ISOFORM Rcoord: 17..103
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 18..89
score: 16.457783
NoneNo IPR availableCDDcd00105KH-Icoord: 20..89
e-value: 2.07779E-16
score: 65.6591

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_399contigContig_399:705..1958 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182220mRNA_19111Tribonema minus UTEX_B_3156 mRNAContig_399 705..1958 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|182220|e_gw1.399.1.1 ID=Trimin1|182220|e_gw1.399.1.1|Name=jgi.p|Trimin1|182220|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=113bp
MPAPTHPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRR
TSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEA
MQRQQQQQGGGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR036612KH_dom_type_1_sf
IPR004088KH_dom_type_1