mRNA_19111 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|182220
Unique NamemRNA_19111
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A836CCL5_9STRA (KH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL5_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.050e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 
Query:    1 MPAPTHPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEAMQXXXXXXXXGR 336
            MPAPTHPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEAMQXXXXXXXXGR
Sbjct:    1 MPAPTHPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEAMQXXXXXXXXGR 112
[Close]
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A836CIW2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIW2_9STRA)

HSP 1 Score: 135 bits (340), Expect = 4.020e-36
Identity = 91/112 (81.25%), Postives = 91/112 (81.25%), Query Frame = 1 
Query:    1 MPAPTHPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEAMQXXXXXXXXGR 336
            MPAPTHPVAAAVAGAAAVTTITVSIPDNM                     TSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEAMQXXXXXXXXGR
Sbjct:  285 MPAPTHPVAAAVAGAAAVTTITVSIPDNM--------------------STSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEAMQXXXXXXXXGR 376
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BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A6H5KLG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 5.940e-22
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:   13 THPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQA 285
            T+PVAAA+A     TT+TV +P+NM+GAILG GGA I+ELQA     SGARINVSQR  F+PGT NR +TITG P A Q AQ+L++ +I+A
Sbjct:  608 TNPVAAAIASCQPTTTVTVGVPNNMIGAILGPGGAIISELQA----LSGARINVSQRDAFMPGTENRILTITGGPQATQTAQYLVSQKIEA 694
[Close]
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A835ZEM4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEM4_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 3.400e-20
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:    1 MPAPTHPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEAM 303
            MP   HP  +AVA     TTI VSIPD ++G ILGRGG T+NELQ      +GARI+VS+RG+ +PGT++R VTITGS AAA AAQ+++ HR+Q A ++ M
Sbjct:  619 MPMVQHPDVSAVA-----TTIMVSIPDALIGVILGRGGVTVNELQM----ITGARISVSRRGNALPGTTDRVVTITGSAAAAHAAQYMMMHRVQEACAQRM 710
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BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: UPI000695E587 (RNA-binding protein Nova-2 n=1 Tax=Chinchilla lanigera TaxID=34839 RepID=UPI000695E587)

HSP 1 Score: 83.6 bits (205), Expect = 1.460e-18
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:   61 ITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRI 279
            + +++P+N+VGAILG+GG T+ E Q      +GARI +S++G+F+PGT NR VTITGSPAA QAAQ+LI+ R+
Sbjct:   28 VEIAVPENLVGAILGKGGKTLVEYQ----ELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRV 96
[Close]
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A670XVA5_PSETE (KH domain-containing protein n=1 Tax=Pseudonaja textilis TaxID=8673 RepID=A0A670XVA5_PSETE)

HSP 1 Score: 84.7 bits (208), Expect = 1.600e-18
Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:   61 ITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRI 279
            + +++P+N+VGAILG+GG T+ E Q      +GARI +S++G+F+PGT NR VTITG+PAA QAAQ+LIT RI
Sbjct:   62 VEIAVPENLVGAILGKGGKTLVEYQ----ELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 130
[Close]
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A8C6YYB6_NOTPE (KH domain-containing protein n=1 Tax=Nothoprocta perdicaria TaxID=30464 RepID=A0A8C6YYB6_NOTPE)

HSP 1 Score: 84.7 bits (208), Expect = 4.430e-18
Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:   61 ITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRI 279
            + +++P+N+VGAILG+GG T+ E Q      +GARI +S++G+F+PGT NR VTITG+PAA QAAQ+LIT RI
Sbjct:   88 VEIAVPENLVGAILGKGGKTLVEYQ----ELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRI 156
[Close]
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A388LDU2_CHABU (Uncharacterized protein n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388LDU2_CHABU)

HSP 1 Score: 87.8 bits (216), Expect = 4.520e-18
Identity = 47/83 (56.63%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:   52 VTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEA 300
            +TT+TV++PD  VGAI+GR G TINE+Q    + S  RI +S+RGDF+ GT+NR VTITGS  A Q AQ+LIT ++Q +A+EA
Sbjct:  327 ITTVTVAVPDEHVGAIVGRSGKTINEIQ----QMSAVRIKISERGDFVQGTNNRKVTITGSAEAVQFAQYLITTKVQNSAAEA 405
[Close]
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A3B4YXF0_9TELE (RNA-binding protein Nova-1-like n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B4YXF0_9TELE)

HSP 1 Score: 87.4 bits (215), Expect = 5.550e-18
Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:   16 HPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRI 279
            +P AAA     A   + +++P+N+VGAILG+GG T+ E Q      +GARI +S++G+FIPGT NR VTITGSPAA QAAQ+LI+ RI
Sbjct:  295 NPAAAAALADGAKDVVEIAVPENLVGAILGKGGKTLVEYQ----ELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLISQRI 378
[Close]
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Match: A0A8B9CXC6_9AVES (KH domain-containing protein n=1 Tax=Anser brachyrhynchus TaxID=132585 RepID=A0A8B9CXC6_9AVES)

HSP 1 Score: 82.0 bits (201), Expect = 1.380e-17
Identity = 41/73 (56.16%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:   61 ITVSIPDNMVGAILGRGGATINELQASGRRTSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRI 279
            + +++P+N+VGAILG+GG T+ E Q      +GARI +S++GDFIPGT +R VTITG PAA QAAQ+LI+ R+
Sbjct:   56 VEIAVPENLVGAILGKGGKTLVEYQ----ELTGARIQISKKGDFIPGTRSRRVTITGPPAATQAAQYLISQRV 124
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|182220 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CCL5_9STRA1.050e-58100.00KH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A836CIW2_9STRA4.020e-3681.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KLG6_9PHAE5.940e-2260.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZEM4_9STRA3.400e-2055.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI000695E5871.460e-1856.16RNA-binding protein Nova-2 n=1 Tax=Chinchilla lani... [more]
A0A670XVA5_PSETE1.600e-1857.53KH domain-containing protein n=1 Tax=Pseudonaja te... [more]
A0A8C6YYB6_NOTPE4.430e-1857.53KH domain-containing protein n=1 Tax=Nothoprocta p... [more]
A0A388LDU2_CHABU4.520e-1856.63Uncharacterized protein n=2 Tax=Chara braunii TaxI... [more]
A0A3B4YXF0_9TELE5.550e-1854.55RNA-binding protein Nova-1-like n=1 Tax=Stegastes ... [more]
A0A8B9CXC6_9AVES1.380e-1756.16KH domain-containing protein n=1 Tax=Anser brachyr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_399contigContig_399:705..1958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|182220|e_gw1.399.1.1
BRITEko00000,ko03041
KEGG koko:K14944
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0031323,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1903311
Preferred nameNOVA2
DescriptionRNA-binding protein
COG categoryA
Max annot lvl33208|Metazoa
EggNOG OGsKOG2191@1|root,KOG2191@2759|Eukaryota,38BV5@33154|Opisthokonta,3BBMF@33208|Metazoa,3D00T@33213|Bilateria,485X2@7711|Chordata,48WMT@7742|Vertebrata
Evalue4.39e-18
Seed ortholog8496.XP_006277894.1
Hectar predicted targeting categoryother localisation
TranscriptId182542
TrackFilteredModels1
ProteinId182220
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182220gene_19111Tribonema minus UTEX_B_3156 geneContig_399 705..1958 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_19111_1exon_19111_1Tribonema minus UTEX_B_3156 exonContig_399 705..853 +
exon_19111_2exon_19111_2Tribonema minus UTEX_B_3156 exonContig_399 1769..1958 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_19111CDS_19111Tribonema minus UTEX_B_3156 CDSContig_399 705..853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182220Trimin1|182220|e_gw1.399.1.1Tribonema minus UTEX_B_3156 polypeptideContig_399 705..1958 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_19111 ID=mRNA_19111|Name=jgi.p|Trimin1|182220|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=339bp|location=Sequence derived from alignment at Contig_399:705..1958+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGCGCCCACGCACCCCGTGGCGGCGGCTGTTGCGGGCGCCGCCGC
CGTCACCACCATCACCGTCTCCATCCCCGACAACATGGTGGGGGCGATAC
TTGGCAGGGGCGGCGCGACCATCAATGAGCTGCAGGCAAGTGGCAGGCGC
ACGAGCGGCGCGCGCATCAACGTGAGCCAGCGCGGCGACTTCATCCCCGG
CACGAGCAACCGCACGGTGACCATCACGGGCTCGCCCGCGGCGGCGCAGG
CGGCGCAGTTCCTCATCACCCACCGCATACAGGCGGCCGCGTCGGAGGCC
ATGCAGCGGCAGCAGCAGCAGCAGGGCGGCGGCAGATGA
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protein sequence of jgi.p|Trimin1|182220

>Trimin1|182220|e_gw1.399.1.1 ID=Trimin1|182220|e_gw1.399.1.1|Name=jgi.p|Trimin1|182220|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=113bp
MPAPTHPVAAAVAGAAAVTTITVSIPDNMVGAILGRGGATINELQASGRR
TSGARINVSQRGDFIPGTSNRTVTITGSPAAAQAAQFLITHRIQAAASEA
MQRQQQQQGGGR*
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mRNA from alignment at Contig_399:705..1958+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_19111 ID=mRNA_19111|Name=jgi.p|Trimin1|182220|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1254bp|location=Sequence derived from alignment at Contig_399:705..1958+ (Tribonema minus UTEX_B_3156 )
ATGCCCGCGCCCACGCACCCCGTGGCGGCGGCTGTTGCGGGCGCCGCCGC
CGTCACCACCATCACCGTCTCCATCCCCGACAACATGGTGGGGGCGATAC
TTGGCAGGGGCGGCGCGACCATCAATGAGCTGCAGGCAAGTGGCAGGCGG
TGTAGTAGGTAGAGTAGCTAGAAGCAGTCCGGGTGCGTTGAGGTTGGTAC
TGAGGGGCGGGGCCGCGGTCGCATGGCGTTGCACGCGCGGCGGTCGACCG
CTCTTCTTCTACTCCGTTGCGTGTTATGCATGGCGCTGCAAGCGCGGCGG
TCGGCTGCTCTTCTCCCCTCTACTCTGCCGCGTGTTCCGCTGTGGTGCGT
TGTGGTCCGCGCTTTGAGCTGGATCAAGTGCCGTGCATGCAGACCTACAC
GTGTCTTTTGATGCCATCTACCGTCACATGGCAACCATCAAGCGCGCGCG
CATCGCCAGCGCGAGGAGGTGCTGGCGGCCTCACTCAACAGGGCGTTGGA
GCAGCATACTCAATAGCATGGGCGTGCGCATACTTCCACAGTCAGTTTGC
AAGGTACCGGTGTCCGTGTCGACATCACGCGCGTCAAGCAGCGGCCGCCT
TCTCAGATCGTCGCAGCGCGCCGGTGCATTGTGGCACTCTCGCAGAACTT
CAACGCCGCGTGCTTCAACAGGAGGCGCCAGCAGCGCACCGTCAGACAGT
CGTATTGTTCAGTGTCATATCGTACTCAGCCACAGTGGTGGGTGAACACA
GCATGAGCTGACCTATGCCCATGTATGCACCTCCTCGAGCATCAGCATCT
GCAAGTACTTTTATTAACTCTCGCTCAGGGCGCGAAAAAGCCCAGATGAT
GGTCTAACTTGATGCTGCTGTACGGAATCTGCATGTCGTGTGACTTCTGA
AAGTGTCTCAACCACTCAAACGCCGCCGCCGCCAAAGTACACTCGTCGAT
GAAGCTCTGTACACATATCGATGAAGAAGCATGCACGCATTTCCCCGCGC
ATCGCCACCTGAAAGTACGCTTATCGTCGCCAACGATTGTCGGCGTCACC
GCTGCTGCGCAGAGCACGAGCGGCGCGCGCATCAACGTGAGCCAGCGCGG
CGACTTCATCCCCGGCACGAGCAACCGCACGGTGACCATCACGGGCTCGC
CCGCGGCGGCGCAGGCGGCGCAGTTCCTCATCACCCACCGCATACAGGCG
GCCGCGTCGGAGGCCATGCAGCGGCAGCAGCAGCAGCAGGGCGGCGGCAG
ATGA
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Coding sequence (CDS) from alignment at Contig_399:705..1958+

>mRNA_19111 ID=mRNA_19111|Name=jgi.p|Trimin1|182220|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=339bp|location=Sequence derived from alignment at Contig_399:705..1958+ (Tribonema minus UTEX_B_3156 )
ATGCCCGCGCCCACGCACCCCGTGGCGGCGGCTGTTGCGGGCGCCGCCGC
CGTCACCACCATCACCGTCTCCATCCCCGACAACATGGTGGGGGCGATAC
TTGGCAGGGGCGGCGCGACCATCAATGAGCTGCAGGCAAGTGGCAGGCGC
ACGAGCGGCGCGCGCATCAACGTGAGCCAGCGCGGCGACTTCATCCCCGG
CACGAGCAACCGCACGGTGACCATCACGGGCTCGCCCGCGGCGGCGCAGG
CGGCGCAGTTCCTCATCACCCACCGCATACAGGCGGCCGCGTCGGAGGCC
ATGCAGCGGCAGCAGCAGCAGCAGGGCGGCGGCAGATGA
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