Trimin1|178249|e_gw1.167.32.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|178249
Unique NameTrimin1|178249|e_gw1.167.32.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length234
Homology
[Close]
BLAST of jgi.p|Trimin1|178249 vs. uniprot
Match: A0A836CIT7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT7_9STRA)

HSP 1 Score: 381 bits (979), Expect = 1.610e-132
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0 
Query:    1 MICSDYELIIQAYADELPFKAMELLYEMEREGFGWTHRPCSTVLQAFGKAGRLAVALQLINKMRERGINPNDADYLILIMACHRGKSGMLAGDRGGSQQALELLQLMQDRGPMPDGIKPNERNWAALLDAIGRAGQVTEMMAWYGEMCQTGEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNALINCYATAKDPERRRKCLRRWSSLPPLSRMPSRSRGT 233
            MICSDYELIIQAYADELPFKAMELLYEMEREGFGWTHRPCSTVLQAFGKAGRLAVALQLINKMRERGINPNDADYLILIMACHRGKSGMLAGDRGGSQQALELLQLMQDRGPMPDGIKPNERNWAALLDAIGRAGQVTEMMAWYGEMCQTGEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNALINCYATAKDPERRRKCLRRWSSLPPLSRMPSRSRGT
Sbjct:    1 MICSDYELIIQAYADELPFKAMELLYEMEREGFGWTHRPCSTVLQAFGKAGRLAVALQLINKMRERGINPNDADYLILIMACHRGKSGMLAGDRGGSQQALELLQLMQDRGPMPDGIKPNERNWAALLDAIGRAGQVTEMMAWYGEMCQTGEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNALINCYATAKDPERRRKCLRRWSSLPPLSRMPSRSRGT 233
[Close]
BLAST of jgi.p|Trimin1|178249 vs. uniprot
Match: A0A835Z5Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z3_9STRA)

HSP 1 Score: 176 bits (445), Expect = 3.600e-50
Identity = 92/155 (59.35%), Postives = 103/155 (66.45%), Query Frame = 0 
Query:   28 MEREGFGWTHRPCSTVLQAFGKAGRLAVALQLINKMRERGINPNDADYLILIMACHRGK-SGMLAGDRGGSQQALELLQLMQDRGPMPD------------------------------GIKPNERNWAALLDAIGRAGQVTEMMAWYGEMCQTG 151
            MEREG  WTHR CSTVLQAFGKAGRL  ALQLI +M +RGI+P+  DYL LI AC RGK +G  AGDRGGS+QALELLQ MQD+GP+PD                              GIKPN  +W ALLDAIG+AGQV EMMAWYGEM  +G
Sbjct:    1 MEREGLAWTHRACSTVLQAFGKAGRLNAALQLIGEMEQRGISPDHIDYLTLIGACARGKKNGTRAGDRGGSEQALELLQRMQDKGPVPDIRHYTAAMKVCVTEGDSAKAVNIFRSMRDQGIKPNAHSWGALLDAIGKAGQVAEMMAWYGEMLASG 155
[Close]
BLAST of jgi.p|Trimin1|178249 vs. uniprot
Match: A0A835Z1B2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B2_9STRA)

HSP 1 Score: 178 bits (452), Expect = 4.160e-50
Identity = 106/236 (44.92%), Postives = 124/236 (52.54%), Query Frame = 0 
Query:    5 DYELIIQAYADELPFKAMELLYEMEREGFGWTHRPCSTVLQAFGKAGRLAVALQLINKMRERGINPNDADYLILIMACHRGKSGMLAGDRGGSQQALELLQLMQDRGPMPDGIKPNERNWAAL------------------------------LDAIGRAGQVTEMMAWYGEMCQTGEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-NALINCYATAKDPER 209
            DYEL I A+A ELP  A+ELL++MEREGFGWT R   TVLQA GK GRL  AL LI++M +R  +P D DYL+LI+AC RGKSGM AGDRGGS+QALE LQ MQD+GP+PD    N      +                              LDAIG+AGQV EMMAWYGEM   G                                            NALINCYATA+ P++
Sbjct:  163 DYELAIHAHAKELPLVALELLHKMEREGFGWTLRARGTVLQALGKDGRLNAALHLIDEMEQRNFSPTDLDYLVLIVACARGKSGMRAGDRGGSEQALEFLQRMQDKGPVPDIRHYNAAMKVCVTKGXXXXXXXXXXXXXXXXXXXXXXXXXXXLDAIGKAGQVAEMMAWYGEMLAIGGVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDK 398
[Close]
BLAST of jgi.p|Trimin1|178249 vs. uniprot
Match: A0A836CK12_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK12_9STRA)

HSP 1 Score: 157 bits (397), Expect = 2.120e-44
Identity = 90/197 (45.69%), Postives = 107/197 (54.31%), Query Frame = 0 
Query:   46 AFGKAGRLAVALQLINKMRERGINPNDADYLILIMACHRGKSGMLAGDRGGSQQALELLQLMQDRGPMPD--------------------------------GIKPNERNWAALLDAIGRAGQVTEMMAWYGEMCQTGE-QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNALINCYATAKDPER 209
            AFGKAGRL+ ALQLI++M++RGI+PND DYL+LI+AC  GK+ M AGDRGGS+QALELLQ MQD GP+PD                                G+KPNER+W ALLDAIGRAGQV EMMAWY EM  +G  Q                                         +A INCYATAK P++
Sbjct:    1 AFGKAGRLSAALQLIDEMKQRGISPNDVDYLMLIVACGHGKNVMRAGDRGGSKQALELLQRMQDTGPVPDIRHYDAAMKVCATEGDLAKAINIFESARDKAMGMKPNERSWGALLDAIGRAGQVAEMMAWYAEMLTSGGLQPNNVILNSMLAHAGTAGELGIAEGIWREMRDRQLEPNSYSYSAFINCYATAKQPDK 197
[Close]
BLAST of jgi.p|Trimin1|178249 vs. uniprot
Match: A0A835YWM4_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWM4_9STRA)

HSP 1 Score: 150 bits (378), Expect = 4.590e-39
Identity = 73/115 (63.48%), Postives = 88/115 (76.52%), Query Frame = 0 
Query:    5 DYELIIQAYADELPFKAMELLYEMEREGFGWTHRPCSTVLQAFGKAGRLAVALQLINKMRERGINPNDADYLILIMACHRGKSG----MLAGDRGGSQQALELLQLMQDRGPMPD 115
            DY+L I AYA ELPF+A+ELL+E EREG  WTHR CST LQAFGKAGRL  ALQLI +M +RGI+P+  DYL L  AC RG +     + AGDRGGS+Q LE+L+ MQD+GP+PD
Sbjct:   27 DYQLAIHAYAKELPFEALELLHETEREGLAWTHRACSTTLQAFGKAGRLNAALQLIGEMEQRGISPDHIDYLTLTGACARGNTRGNNVIRAGDRGGSEQVLEILRRMQDKGPVPD 141
[Close]
BLAST of jgi.p|Trimin1|178249 vs. uniprot
Match: A0A836CEZ1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ1_9STRA)

HSP 1 Score: 142 bits (357), Expect = 8.570e-36
Identity = 86/206 (41.75%), Postives = 103/206 (50.00%), Query Frame = 0 
Query:    5 DYELIIQAYADELPFKAMELLYEMEREGFGWTHRPCSTVLQAFGKAGRLAVALQLINKMRERGINPNDADYLILIMACHRGKSGMLAGDRGGSQQALELLQLMQDRGPMPDGIKPNERNWAALLDAIGRAGQVTEMMAWYGEMCQTGE-QXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNALINCYATAKDPER 209
            DY+LII AYA ELP +A+ELL++MEREGFGWTHR CSTVLQAFGKAGRL+ ALQLI+ M +R  NP+D                                           GIK + R+W  LL+AIGRAGQVTEMMAWY EM ++G  Q                                         NALI CYATA+ P++
Sbjct:  159 DYQLIIHAYAKELPLEALELLHQMEREGFGWTHRACSTVLQAFGKAGRLSAALQLIDVMEQRNCNPSD-------------------------------------------GIKLDVRSWNVLLNAIGRAGQVTEMMAWYREMLKSGGLQPDTVLMTTLLDNAGKAGELGIAEGIWREMRDRQLAPDVKAYNALITCYATARQPDK 321
[Close]
BLAST of jgi.p|Trimin1|178249 vs. uniprot
Match: A0A835ZB42_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB42_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.080e-35
Identity = 66/96 (68.75%), Postives = 78/96 (81.25%), Query Frame = 0 
Query:   20 KAMELLYEMEREGFGWTHRPCSTVLQAFGKAGRLAVALQLINKMRERGINPNDADYLILIMACHRGKSGMLAGDRGGSQQALELLQLMQDRGPMPD 115
            +A+EL +EMEREGFGWT R CSTVL A GKAGRL  ALQLI++M +R  +PND DYL LI AC RGK+ + AGDRGGS+QALE LQ MQD+GP+PD
Sbjct:    2 QALEL-HEMEREGFGWTQRACSTVLLACGKAGRLNAALQLIDEMEKRTFSPNDVDYLKLIEACVRGKNVIRAGDRGGSKQALEFLQRMQDKGPVPD 96
[Close]
BLAST of jgi.p|Trimin1|178249 vs. uniprot
Match: A0A836CK07_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK07_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.590e-32
Identity = 73/133 (54.89%), Postives = 92/133 (69.17%), Query Frame = 0 
Query:    5 DYELIIQAYADELPFKAMELLYEMEREGFGWTHRPCSTVLQAFGKAGRLAVALQLINKMRERGINPNDADYLILIMACHRGKSGML---AGD-RGGSQQALELLQLMQDRGPMPDGIKPNERNWAALLDAIGR 133
            DYEL IQAY ++LPFKAMELL EM+REGFGWTHR CS VL AFGKAGRL  A+QLI  M+E GI+P+  D+L+L   C R +   +   AGD RGGS+ A++LLQLM+D       + P+ +N+ A L    R
Sbjct:  362 DYELAIQAYENQLPFKAMELLREMKREGFGWTHRACSAVLLAFGKAGRLNAAVQLIKAMQEVGISPDKVDFLMLTTNCVRDERSEVVTPAGDSRGGSKMAIKLLQLMRDTR-----VAPDVKNFNAALKVCAR 489
[Close]
BLAST of jgi.p|Trimin1|178249 vs. uniprot
Match: A0A836CLV8_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV8_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.300e-32
Identity = 64/110 (58.18%), Postives = 83/110 (75.45%), Query Frame = 0 
Query:   28 MEREGFGWTHRPCSTVLQAFGKAGRLAVALQLINKMRERGINPNDADYLILIMACHRGKSGMLAGDRGGSQQALELLQLMQDRGPMPDGIKPNERNWAALLDAIGRAGQV 137
            MEREGF WT R C T+LQA GKAGRL  ALQLI++M++R I+P+ AD+LILI+AC+ GK+GM AG+RGGS+QALELLQ MQD+GP+PD      R++ A +      G +
Sbjct:    1 MEREGFTWTQRACGTLLQACGKAGRLNAALQLIDEMQQRNISPSGADHLILIVACNCGKNGMRAGNRGGSEQALELLQRMQDKGPVPD-----IRHYGAAMTVCATGGDL 105
[Close]
BLAST of jgi.p|Trimin1|178249 vs. uniprot
Match: A0A835YW77_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW77_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.970e-27
Identity = 62/122 (50.82%), Postives = 75/122 (61.48%), Query Frame = 0 
Query:   52 RLAVALQLINKMRERGINPNDADYLILIMACHRGKSGMLAGDRGGSQQALELLQLMQDRGPMPD------------------------------GIKPNERNWAALLDAIGRAGQVTEMMAW 143
            RL  ALQLI++M++R I+P+DADYLILI+AC RGK     GDRGGS+QALELLQ MQD+GP+PD                              GIKPN+ +WAALLDA GRAG   + M W
Sbjct:   13 RLNAALQLIDEMQQRNISPSDADYLILIVACDRGKRRTRGGDRGGSEQALELLQRMQDKGPVPDLRHYSAAITVCVTEGDLANAVNTFQSMRDKGIKPNDWSWAALLDAFGRAGGRNDGMVW 134
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178249 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIT7_9STRA1.610e-132100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z5Z3_9STRA3.600e-5059.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1B2_9STRA4.160e-5044.92PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CK12_9STRA2.120e-4445.69PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835YWM4_9STRA4.590e-3963.48Smr domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836CEZ1_9STRA8.570e-3641.75PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835ZB42_9STRA1.080e-3568.75PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CK07_9STRA1.590e-3254.89PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CLV8_9STRA2.300e-3258.18PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835YW77_9STRA3.970e-2750.82PPR_long domain-containing protein n=1 Tax=Tribone... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 90..225
e-value: 8.0E-26
score: 93.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 3..89
e-value: 4.1E-13
score: 51.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 24..82
e-value: 3.5E-5
score: 23.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 124..149
e-value: 0.33
score: 11.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 124..156
e-value: 1.1E-4
score: 20.1
coord: 40..71
e-value: 3.0E-7
score: 28.2
coord: 157..191
e-value: 4.0E-4
score: 18.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 154..202
e-value: 4.6E-10
score: 39.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 155..189
score: 9.284279
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 120..154
score: 9.284279
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 36..70
score: 10.325603
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 20..216

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_167contigContig_167:267181..268514 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178249mRNA_16962Tribonema minus UTEX_B_3156 mRNAContig_167 267181..268514 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|178249|e_gw1.167.32.1 ID=Trimin1|178249|e_gw1.167.32.1|Name=jgi.p|Trimin1|178249|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=234bp
MICSDYELIIQAYADELPFKAMELLYEMEREGFGWTHRPCSTVLQAFGKA
GRLAVALQLINKMRERGINPNDADYLILIMACHRGKSGMLAGDRGGSQQA
LELLQLMQDRGPMPDGIKPNERNWAALLDAIGRAGQVTEMMAWYGEMCQT
GEQPNVYTMTTLLDHAGAAGELSVAEGIWREMRNRQLEPDVYCYNALINC
YATAKDPERRRKCLRRWSSLPPLSRMPSRSRGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat