Trimin1|178183|e_gw1.166.78.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|178183
Unique NameTrimin1|178183|e_gw1.166.78.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length279
Homology
BLAST of jgi.p|Trimin1|178183 vs. uniprot
Match: A0A835ZFT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT0_9STRA)

HSP 1 Score: 572 bits (1475), Expect = 1.280e-206
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0
Query:    1 MEAPSLFVYKVEEAVAVITSHLLRSSEPAASLPPGLFLDIAQFLTLEERGKAVCCVSRKWRQLGEHNHLWREPYLTRFKFHSPQEDLATHTEAQELAQPGPKVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEGFFSVTEERCRLVSKGASAPPQSEGRSDTARALCNIARQSCGCSVM 278
            MEAPSLFVYKVEEAVAVITSHLLRSSEPAASLPPGLFLDIAQFLTLEERGKAVCCVSRKWRQLGEHNHLWREPYLTRFKFHSPQEDLATHTEAQELAQPGPKVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEGFFSVTEERCRLVSKGASAPPQSEGRSDTARALCNIARQSCGCSVM
Sbjct:    1 MEAPSLFVYKVEEAVAVITSHLLRSSEPAASLPPGLFLDIAQFLTLEERGKAVCCVSRKWRQLGEHNHLWREPYLTRFKFHSPQEDLATHTEAQELAQPGPKVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEGFFSVTEERCRLVSKGASAPPQSEGRSDTARALCNIARQSCGCSVM 278          
BLAST of jgi.p|Trimin1|178183 vs. uniprot
Match: A0A835ZI68_9STRA (Tudor-knot domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI68_9STRA)

HSP 1 Score: 263 bits (672), Expect = 4.590e-85
Identity = 136/239 (56.90%), Postives = 166/239 (69.46%), Query Frame = 0
Query:   43 FLTLEERGKAVCCVSRKWRQLGEHNHLWREPYLTRFKFHSPQEDLATHTEAQELAQPGPKVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEGFFSVTEERCRLVSKGA-SAPPQSEGRSDTARALCNIARQS--CGCSVM 278
            FL+L E G  +  +S+ WRQL EH++LWREPY  RFK      D      +     P    K+ FARRL+ PQVGDRVEVAWRGKFRLESLE+++GLAWWLA++V    D +RYKVHYPGWE RWDE+V RERLRWGND RAA+L    + VGD VE+WCGG +VPGAWLEGRVS IR +R +LGD++A G FS+   RCRLV K    A  + EG +   R+L N+A  +  CGCSVM
Sbjct:    3 FLSLPELG-TLARLSKSWRQLSEHDYLWREPYKARFKI----SDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAELMARGEEEGETVRRRSL-NVACMAAPCGCSVM 235          
BLAST of jgi.p|Trimin1|178183 vs. uniprot
Match: W7T606_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T606_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.010e-53
Identity = 110/278 (39.57%), Postives = 157/278 (56.47%), Query Frame = 0
Query:    4 PSLFVYKVEEAVAVITSHLLRSSEPAASLPPGLFLDIAQFLTLEERGKAVCCVSRKWRQLGEHNHLWREPYLTRFKF-HSPQEDLATHTEAQELAQPGPKVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEGFFSVTEERCRLVSKGASAPPQSEGRSD--TARALCNIARQSCGCSVM 278
            P+LF+  V      + +      +    LP  + +  A F+++ E G A   V ++W++  +   +W+  Y+ RF F HSP +D +T        Q       LF  RL+ P VGD VEVAW+GKFRLES++IY GLAWW A +VE   +G RYK+HYPGW++RWDE+V R+RLRW  +    Q  ++RI   D VEIWC G+NVPGAWLE +V  ++G+   +G V++ G   V  ER R+  KG +     +G S+  +  A    A     CSVM
Sbjct:  170 PNLFIPDVRRLSLEVMAEFF-DKDRVNKLPSAVLIYTASFMSISELGMAAS-VCQQWKETVQSVAVWKPLYIKRFHFLHSP-DDASTGIGLPLSYQA------LFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVE----QDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISPKGGARSLGKQGASNFFSRDAAAAAAAVGASCSVM 434          
BLAST of jgi.p|Trimin1|178183 vs. uniprot
Match: A0A4D9D060_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D060_9STRA)

HSP 1 Score: 178 bits (451), Expect = 5.750e-51
Identity = 92/203 (45.32%), Postives = 129/203 (63.55%), Query Frame = 0
Query:   32 LPPGLFLDIAQFLTLEERGKAVCCVSRKWRQLGEHNHLWREPYLTRFKF-HSPQEDLATHTEAQELAQPGPKVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEG 233
            LP  + +  A F+++ E G A   V ++W++  +   +W+  Y+ RF F HSP +D +T                LF  RL+ P VGD VEVAW+GKFRLES++IY GLAWW A +VE   +G RYK+HYPGW++RWDE+VPR+RLRW  +    Q  ++RI   D VEIWC G+NVPGAWLE +V  ++G+   +G V++ G
Sbjct:   75 LPSAVLIYTASFMSISELGMAAS-VCQQWKETVQSGAVWKPLYIKRFHFLHSP-DDASTGIGLPV------SYHALFRARLLDPYVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRWTVE----QDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSG 265          
BLAST of jgi.p|Trimin1|178183 vs. uniprot
Match: D7FY36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY36_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 3.810e-50
Identity = 81/149 (54.36%), Postives = 102/149 (68.46%), Query Frame = 0
Query:  100 GPKVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEGFFSVTEERCRLVSKG 248
            G   K  + RRL+ P VGD V+VAW+GKFRLESLE+Y+G AWWLA +V+       YKVHYPGWE +WDE+V R+RLRWGN+  AA L+   +  GD VE+WC G +VPGAWLE  V  +  ERV+LG+V+  G F    E  RL+ KG
Sbjct:  143 GDGFKGRYKRRLLDPHVGDEVQVAWKGKFRLESLEVYDGTAWWLARVVDKGEKPGYYKVHYPGWEPKWDEWVVRDRLRWGNEHLAAPLKGIPLQAGDAVEVWCKGLHVPGAWLEAVVYEVEKERVYLGEVLTSGHFWARTEHVRLIQKG 291          
BLAST of jgi.p|Trimin1|178183 vs. uniprot
Match: A0A7S4A403_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A403_9STRA)

HSP 1 Score: 164 bits (415), Expect = 5.890e-45
Identity = 106/256 (41.41%), Postives = 133/256 (51.95%), Query Frame = 0
Query:   12 EEAVAVITSHLLRSSEPAASLPPGLFLDIAQFLTLEERGKAVCCVSRKWRQLGEHNHLWREPYLTRFKFHSPQEDLATHTEAQELAQPGPKVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVE---CDAD------GQR-------YKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRD-ERIAVGDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEGFFSVTEERCRLVSKGAS 250
            EEA  V+ S+ L        L    FLD+    TL         VSR W  L   + LWR+ YL RF   S + D  T  +  E        K  + +RL  P VGD VEVAWRGKFRLESLEIY G AWW+A +V+    DA       G++       YKV +PGWE RWDE+V R+RLRW    RA   ++ + +   D VE+WCG  NVPGAWLE  V  IRG+ V +G V++ G   V   R R     +S
Sbjct:   86 EEAPPVVVSNTLPRDTMLLCLS---FLDVTAHTTLST-------VSRDWLSLSSEDALWRDHYLNRFSGGSDEGDGETSADEYE------DYKQEYKQRLEDPHVGDDVEVAWRGKFRLESLEIYRGTAWWVAVVVDKVALDAASGSPGRGRKIHAAKAWYKVTFPGWEGRWDEWVSRDRLRW----RAKNTQEADALKPRDFVEVWCGSQNVPGAWLEASVQKIRGDAVEVGRVLSTGSLWVDRSRVRRARSSSS 321          
BLAST of jgi.p|Trimin1|178183 vs. uniprot
Match: A0A8J2SC81_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SC81_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.420e-44
Identity = 93/235 (39.57%), Postives = 127/235 (54.04%), Query Frame = 0
Query:   52 AVCCVSRKWRQLGEHNHLWREPYLTRFKFHSPQEDLATHTEAQELAQPGPKVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVE-------------CDADGQR---YKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEGFFSVTEERCRLVSKGASAPPQSEGRSDTARALCNIAR 270
            A+  VSR  R+    +  WR  Y  RF      +D + H +       G  +++ F +RL  P  GDRVE+AWRG+FRLE LE+Y GLAWW AE+VE             C  D +R   YKVHY  W+ARWDE+V R++LRW       + R   +A GD VE+WC G+ VPGAWL   V+++ GE   +GDV + G   V  +R RL+ +     P++  R    R L  +AR
Sbjct:  106 AMAAVSRAARRAASSDAAWRPQYARRF---GAADDASEHFDF------GASLRESFRQRLGDPAPGDRVEIAWRGRFRLEGLEVYRGLAWWAAEVVEKRDAXXXXXXAPDCPLDDRRARKYKVHYVHWDARWDEWVARDQLRWP----VPEGRTGVVASGDDVEVWCSGSAVPGAWLRAVVTAVEGELYCVGDVASSGRLWVRRDRVRLIQRKQDRAPRAPKRLQPCRMLFALAR 327          
BLAST of jgi.p|Trimin1|178183 vs. uniprot
Match: D8LI95_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI95_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 5.960e-42
Identity = 89/229 (38.86%), Postives = 132/229 (57.64%), Query Frame = 0
Query:   24 RSSEPAASLPPGLFLDIAQFLTLEERGKAVCCVSRKWRQLGEHNHLWREPYLTRFKFHSPQEDLATHTEAQELAQPGPKVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEGFFSV--TEERCRLVSKGAS 250
            R++   A LP  L     + L + + G+ VCCV++ WR   E + +WR  +  RF+   P +        +  A+ G  +K L   RL  P VGD+VEV+W G+FRLESL+++ G +WW A +V+   DG +YK+HYPGW++ WDE+V R+RLRW  D            V ++VE+WC GT+V GAWL+ RV  I+ ++V L +V+A    +V     + R V  GAS
Sbjct:   21 RATGQLAGLPRELLARSMELLNMVDLGQ-VCCVNKDWRNAAEEDAVWRFWWARRFREDPPPQ--------RGRARAG-HLKQLHRYRLEDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQ-KMDGFKYKIHYPGWDSNWDEWVVRDRLRWPVD---PSYLSTTFRVREVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTVWVPRSKVRRVCTGAS 235          
BLAST of jgi.p|Trimin1|178183 vs. uniprot
Match: A0A7S2XXB7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXB7_9STRA)

HSP 1 Score: 105 bits (262), Expect = 5.210e-25
Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = 0
Query:  156 YKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEGFFSVTEERCRLVSKGASAPPQSEGRSDTARALCNIARQSCGCSVM 278
            YK+HYPGW+ RWDE+VPR RLRW           E   V D VE+WC G+NVPGAWLE +V +I+GE++F+G +++ G   V + R RL  K     P+   ++     L ++  Q+  C +M
Sbjct:    1 YKIHYPGWDTRWDEWVPRNRLRWAMHHNPM----ENFQVNDRVEVWCTGSNVPGAWLEAQVKAIKGEQIFVGKMLSSGPLWVAKTRVRLCPK-----PKEPAKNSFPSMLKDVTNQA-ACHIM 113          
BLAST of jgi.p|Trimin1|178183 vs. uniprot
Match: D7G101_ECTSI (Tudor-knot domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G101_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 2.270e-20
Identity = 64/204 (31.37%), Postives = 90/204 (44.12%), Query Frame = 0
Query:   56 VSRKWRQLGEHNHLWREPYLTRFKFHSPQEDLATH-------TEAQELAQPGPKVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVEC------------DADGQ------------------RYKVHYPGWEARWDEFVPRERLRWGNDR------RAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRV 216
            VSR+W ++G  + +W   Y  RF   +   +L          T A    + G  V+  F  RL  P VGD VEVAW+GKFRL+   ++ GL+WW A++V              D DG+                  R+ VHY  W  RWDE++   R+RW          + +      + V    E+WC G +  GAWLE RV
Sbjct:    3 VSRRWHRIGGSDFMWLPLYSRRFGPAASLPELFERVGLDPGDTAAASKRRSG-MVRFAFRSRLACPVVGDHVEVAWKGKFRLDDCMVFVGLSWWDAKVVAVELGESLPCTTPDDEDGEDGRVDRRGATCMGERRPKRFLVHYRSWSRRWDEWLEPSRVRWARKMPTEACGQTSASAGPELEVDQEAELWCHGGSGGGAWLEARV 205          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|178183 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A835ZFT0_9STRA1.280e-206100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZI68_9STRA4.590e-8556.90Tudor-knot domain-containing protein n=1 Tax=Tribo... [more]
W7T606_9STRA1.010e-5339.57F-box domain-containing protein n=1 Tax=Nannochlor... [more]
A0A4D9D060_9STRA5.750e-5145.32F-box domain-containing protein n=1 Tax=Nannochlor... [more]
D7FY36_ECTSI3.810e-5054.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4A403_9STRA5.890e-4541.41Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A8J2SC81_9STRA1.420e-4439.57Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D8LI95_ECTSI5.960e-4238.86F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2XXB7_9STRA5.210e-2541.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7G101_ECTSI2.270e-2031.37Tudor-knot domain-containing protein n=1 Tax=Ectoc... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1280.50coord: 16..132
e-value: 4.7E-7
score: 31.6
NoneNo IPR availableGENE3D2.30.30.140coord: 133..178
e-value: 6.6E-10
score: 40.8
IPR025995RNA binding activity-knot of a chromodomainPFAMPF11717Tudor-knotcoord: 141..177
e-value: 1.3E-4
score: 21.7
IPR001810F-box domainPFAMPF12937F-box-likecoord: 30..75
e-value: 3.2E-6
score: 26.9
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 30..86
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 114..183

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_166contigContig_166:33667..34503 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|178183mRNA_13288Tribonema minus UTEX_B_3156 mRNAContig_166 33667..34503 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|178183|e_gw1.166.78.1 ID=Trimin1|178183|e_gw1.166.78.1|Name=jgi.p|Trimin1|178183|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=279bp
MEAPSLFVYKVEEAVAVITSHLLRSSEPAASLPPGLFLDIAQFLTLEERG
KAVCCVSRKWRQLGEHNHLWREPYLTRFKFHSPQEDLATHTEAQELAQPG
PKVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECD
ADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEI
WCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEGFFSVTEERCRLVSKGAS
APPQSEGRSDTARALCNIARQSCGCSVM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025995Tudor-knot
IPR001810F-box_dom
IPR036047F-box-like_dom_sf
IPR016197Chromo-like_dom_sf