Trimin1|177604|e_gw1.155.4.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|177604
Unique Name	Trimin1\|177604\|e_gw1.155.4.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	364

Homology

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BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: A0A835ZEC7_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC7_9STRA)

HSP 1 Score: 697 bits (1799), Expect = 3.870e-253
Identity = 363/363 (100.00%), Postives = 363/363 (100.00%), Query Frame = 0

Query:    1 MSSTAAVAVAEARRRRSTREAGSAKAAHDAIRPFLSQEGASESATAAKLFMFDELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPHHQQRCVALC 363
            MSSTAAVAVAEARRRRSTREAGSAKAAHDAIRPFLSQEGASESATAAKLFMFDELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPHHQQRCVALC
Sbjct:    1 MSSTAAVAVAEARRRRSTREAGSAKAAHDAIRPFLSQEGASESATAAKLFMFDELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPHHQQRCVALC 363

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BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: A0A835YXH6_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH6_9STRA)

HSP 1 Score: 510 bits (1314), Expect = 5.160e-179
Identity = 265/336 (78.87%), Postives = 291/336 (86.61%), Query Frame = 0

Query:   23 SAKAAHDAIRPFLSQEGASESATAAKLFMFDELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPHHQQR 358
            S   +H+A   +LS+ GA+E+  AAK++MFDELG A+LLSH QE+ LG KIQQL+AME +RDQL+ ALRR PTD EWAEACGY  + R LFR AY + L AKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDP KGF+FSTYAAWWIQQAI+KAIAYHSRTIRLPVHVHNLLYSVRRARK L LELGR PTE ELA RVG+P +RLR+YLRASR+TISTE PS   GFNPQDQVLGDTL ARD VAPED AE GLFR RL EVM ALPEEERRVVTLRFGLEDG++RSLAE+A ASRCSK+WVRRTESRA+RKLRAP HQQR
Sbjct:   45 STSTSHEATVSYLSEHGAAEAKLAAKVYMFDELGTADLLSHKQEMELGYKIQQLVAMELIRDQLEVALRRQPTDSEWAEACGYTREHRELFRAAYTDCLHAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPAKGFKFSTYAAWWIQQAIFKAIAYHSRTIRLPVHVHNLLYSVRRARKNLTLELGRAPTEGELASRVGVPLERLRKYLRASRSTISTEIPSASSGFNPQDQVLGDTLVARDMVAPEDSAEMGLFRKRLEEVMLALPEEERRVVTLRFGLEDGKSRSLAEIASASRCSKDWVRRTESRAMRKLRAPQHQQR 380

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BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: B7FPT1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPT1_PHATC)

HSP 1 Score: 271 bits (692), Expect = 1.500e-85
Identity = 154/312 (49.36%), Postives = 202/312 (64.74%), Query Frame = 0

Query:   57 RAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQD------QVLGDTLEAR----DTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPHHQQR 358
            R ELL+ D+E  LG KIQ ++  E + + L + L R PT +EWA ACG  A     F +       AK  MV SNMRLV+++A++Y  +GV L DLVQEGSLGL RAAEK++P KGF+FSTYA+WWIQQA++++IAYHSRTIRLPVHVHNLL  VR+ R  L  EL RTPT  E+A  +GM   +  + LR ++ +IS E P  K   NP+D       +LGDT+ A     D   PE   +RG+F   L E++  L E+ERRV+  R+GL DG TR++  VA   + SK WVR  E RALRKLR P ++++
Sbjct:    8 RTELLTADEEYSLGMKIQFMIKCELVHEGLSSKLMRLPTIEEWAAACGGTATD---FVEMVMTSREAKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQEGSLGLSRAAEKFEPKKGFKFSTYASWWIQQAVFRSIAYHSRTIRLPVHVHNLLNRVRKVRNNLQRELSRTPTNEEMAEELGMTLQKYNKMLRLTKRSISLETP--KYQSNPKDLGHESHDLLGDTISASSALFDESTPEKRVDRGIFHEDLHEMLEILDEDERRVICSRYGLSDGLTRTVTAVASQMKQSKAWVRSQECRALRKLRRPWYEKK 314

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BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: B8C0J0_THAPS (Plastid RNA polymerase sigma factor (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0J0_THAPS)

HSP 1 Score: 260 bits (665), Expect = 1.590e-81
Identity = 147/312 (47.12%), Postives = 201/312 (64.42%), Query Frame = 0

Query:   57 RAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQD------QVLGDTLEAR----DTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPHHQQR 358
            + ELL+  +E  LG K++ ++  E++ + L   + R P+  EWA AC       RLFR+       AK  MV  NMRLV+++A+RY  +GV + DLVQEGSLGL RAAEK+DP KGF+FSTYA+WWIQQA++++IAYHSRTIRLPVHVHNLL  VRRAR+ L  ELGRTPT  E+AV + M  ++  + +R +R  IS E P  K   NP+D       ++GD +++     D   PE   + GL    +  ++G L E+ER V+ LR+G+ DG TR++  VA   R +K WVR  E RALRKLR P +++R
Sbjct:    1 KTELLTAKEEYSLGMKVKFMVKCEAVHEGLSVEMGRSPSIAEWAAACSP-----RLFREMMLTAKEAKQRMVQCNMRLVVSIARRYHGVGVNVQDLVQEGSLGLARAAEKFDPKKGFKFSTYASWWIQQAVFRSIAYHSRTIRLPVHVHNLLNKVRRARQVLQQELGRTPTNEEMAVEMDMTIEKYNKMIRTTRNAISLERPKYKN--NPKDLGHESEALVGDMVDSSAVIFDEKTPEQNVDHGLLHNDIEYMLGKLGEDERSVLCLRYGINDGITRTVTLVASEMRQTKSWVRSQECRALRKLRRPWYEKR 305

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BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: A0A357AD46_9CYAN (RNA polymerase sigma factor SigA n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A357AD46_9CYAN)

HSP 1 Score: 251 bits (642), Expect = 2.220e-77
Identity = 141/301 (46.84%), Postives = 196/301 (65.12%), Query Frame = 0

Query:   54 ELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPH 354
            E+GR  LL  D+E+ L +KI  L+ +E LRD L+  L R P+D EWAE+ G P  Q   FR       RAK  MV SN+RLV+++AK+Y   G+   DL+QEGSLGLIRAAEK+D +KG++FSTYA WWI+QAI +AIA  SRTIRLPVH++  +  +++  K L  E+GR PTE E+A R+ M  ++LR   ++++  IS E P GK     +D  LGD +E+ D   PED   + L R  L  V+G L   ER V+ LR+GL+DGR ++L E+      ++E +R+ E++ALRKLR P+
Sbjct:   71 EIGRIRLLRADEEIELARKIADLLELERLRDDLEDGLEREPSDAEWAESVGMPLPQ---FRYRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKE----EDSRLGDFIES-DGETPEDEVSKSLLREDLEGVLGTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPN 363

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BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: A0A1Z3HQF2_9CYAN (RNA polymerase sigma factor SigA n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A1Z3HQF2_9CYAN)

HSP 1 Score: 251 bits (640), Expect = 4.300e-77
Identity = 142/303 (46.86%), Postives = 198/303 (65.35%), Query Frame = 0

Query:   54 ELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEAC--GYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPH 354
            E+GR  LL  ++E+ L +KI  L+ +E +RD L  +L R P DDEWAEA     PA +RRL +       RAK  MV SN+RLV+++AK+Y   G+   DL+QEGSLGLIRAAEK+D +KG++FSTYA WWI+QAI +AIA  SRTIRLPVH++  +  +++  K L  ELGR PTE E+A R+ M  ++LR   ++++  IS E P GK     +D  LGD +E+ D   PED   + L R  L  V+G L   ER V+ LR+GL+DGR ++L E+      ++E +R+ E++ALRKLR P+
Sbjct:   70 EIGRIRLLRAEEEIELARKIADLLELERIRDDLVDSLEREPRDDEWAEAVDMALPAFRRRLHQGR-----RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE----EDSRLGDFIES-DGETPEDEVSKSLLREDLESVLGTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPN 362

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BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: Q59965_SYNP2 (RNA polymerase sigma factor SigA n=7 Tax=Cyanobacteria TaxID=1117 RepID=Q59965_SYNP2)

HSP 1 Score: 249 bits (636), Expect = 1.870e-76
Identity = 147/322 (45.65%), Postives = 203/322 (63.04%), Query Frame = 0

Query:   42 ESATAAKLFMFD-------ELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPAD--QRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPH 354
            E+AT  K +  D       E+GR  LL  ++E+ L +KI  L+ +E +R+QL     R PTD EWAEA G P    +RRLF        RAK  MV SN+RLV+++AK+Y   G+   DL+QEGSLGLIRAAEK+D +KG++FSTYA WWI+QAI +AIA  SRTIRLPVH++  +  +++  K L  ELGR PTE E+A R+ M  ++LR   ++++  IS E P GK     +D  LGD +EA D   PED   + L R  L  V+  L   ER V+ LR+GL+DGR ++L E+      ++E +R+ E++ALRKLR P+
Sbjct:   54 ETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGR-----RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKE----EDSRLGDFIEA-DGETPEDQVSKSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPN 365

[Close]

BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: A0A6I5RBY2_9CYAN (RNA polymerase sigma factor SigA n=6 Tax=Cyanobacteria TaxID=1117 RepID=A0A6I5RBY2_9CYAN)

HSP 1 Score: 249 bits (635), Expect = 2.280e-76
Identity = 141/303 (46.53%), Postives = 198/303 (65.35%), Query Frame = 0

Query:   54 ELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYP--ADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPH 354
            E+GR  LL  ++E+ L +KI  L+ +E +RDQL  +L R P D EWAEA   P  A Q+RL+        RAK  MV SN+RLV+++AK+Y   G+   DL+QEGSLGLIRAAEK+D +KG++FSTYA WWI+QAI +AIA  SRTIRLPVH++  +  +++  K L  ELGR P+E E+A R+ M  ++LR   ++++  IS E P GK     +D  LGD +E+ D   PED   + L R  L  V+G L   ER V+ LR+GL+DGR ++L E+      ++E +R+ E++ALRKLR P+
Sbjct:   68 EIGRIRLLRAEEEIELARKIADLLELERIRDQLMDSLEREPNDAEWAEAVDMPLPAFQKRLYIGR-----RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPSEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE----EDSRLGDFIES-DGETPEDEVSKNLLREDLEGVLGTLSARERDVLRLRYGLDDGRMKTLEEIGQTFNVTRERIRQIEAKALRKLRHPN 360

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BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: SIGA1_SYNE7 (RNA polymerase sigma factor SigA1 n=5 Tax=Synechococcus TaxID=1129 RepID=SIGA1_SYNE7)

HSP 1 Score: 249 bits (636), Expect = 3.740e-76
Identity = 142/303 (46.86%), Postives = 198/303 (65.35%), Query Frame = 0

Query:   54 ELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYPADQ--RRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPH 354
            E+GR  LL  D+E+ L ++I  L+A+E +RD+L   L R P+D EWA A   P D+  RRLFR       RAK  MV SN+RLV+++AK+Y   G+   DL+QEGSLGLIRAAEK+D +KG++FSTYA WWI+QAI +AIA  SRTIRLPVH++  +  +++  K L  E+GR PTE E+A R+ M  ++LR   ++++  IS E P GK     +D  LGD +EA D   PED   + L R  L  V+  L   ER V+ LR+GL+DGR ++L E+      ++E +R+ E++ALRKLR P+
Sbjct:   97 EIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGR-----RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE----EDSRLGDFIEA-DGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPN 389

[Close]

BLAST of jgi.p|Trimin1|177604 vs. uniprot
Match: UPI0019E2248B (RNA polymerase sigma factor RpoD n=2 Tax=Leptolyngbyaceae TaxID=1890438 RepID=UPI0019E2248B)

HSP 1 Score: 248 bits (633), Expect = 5.110e-76
Identity = 142/303 (46.86%), Postives = 198/303 (65.35%), Query Frame = 0

Query:   54 ELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWAEACGYP--ADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRLPVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASRTTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVMGALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKLRAPH 354
            E+GR  LL  ++E+ L +KI  L+ +E +RDQL  +L+R P D EWAEA   P  A Q+RL         RAK  MV SN+RLV+++AK+Y   G+   DL+QEGSLGLIRAAEK+D +KG++FSTYA WWI+QAI +AIA  SRTIRLPVH++  +  +++  K L  ELGR PTE E+A R+ M  ++LR   ++++  IS E P GK     +D  LGD +E+ D   PED   + L R  L  V+G L   ER V+ LR+GL+DGR ++L E+      ++E +R+ E++ALRKLR P+
Sbjct:   72 EIGRIRLLRAEEEIELARKIADLLELERIRDQLMDSLQREPHDAEWAEAVDMPLPAFQKRLHIGR-----RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKE----EDSRLGDFIES-DGETPEDEVSKSLLREDLEGVLGTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPN 364

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|177604 vs. uniprot

BLAST of jgi.p|Trimin1|177604 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZEC7_9STRA	3.870e-253	100.00	RNA_pol_sigma70 domain-containing protein n=1 Tax=...	[more]
A0A835YXH6_9STRA	5.160e-179	78.87	RNA_pol_sigma70 domain-containing protein n=1 Tax=...	[more]
B7FPT1_PHATC	1.500e-85	49.36	Predicted protein n=2 Tax=Phaeodactylum tricornutu...	[more]
B8C0J0_THAPS	1.590e-81	47.12	Plastid RNA polymerase sigma factor (Fragment) n=1...	[more]
A0A357AD46_9CYAN	2.220e-77	46.84	RNA polymerase sigma factor SigA n=2 Tax=Cyanobact...	[more]
A0A1Z3HQF2_9CYAN	4.300e-77	46.86	RNA polymerase sigma factor SigA n=2 Tax=Pseudanab...	[more]
Q59965_SYNP2	1.870e-76	45.65	RNA polymerase sigma factor SigA n=7 Tax=Cyanobact...	[more]
A0A6I5RBY2_9CYAN	2.280e-76	46.53	RNA polymerase sigma factor SigA n=6 Tax=Cyanobact...	[more]
SIGA1_SYNE7	3.740e-76	46.86	RNA polymerase sigma factor SigA1 n=5 Tax=Synechoc...	[more]
UPI0019E2248B	5.110e-76	46.86	RNA polymerase sigma factor RpoD n=2 Tax=Leptolyng...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 175..183 score: 82.58 coord: 324..339 score: 25.89 coord: 151..164 score: 63.41 coord: 303..315 score: 43.08 coord: 339..350 score: 49.46
IPR000943	RNA polymerase sigma-70	PROSITE	PS00715	SIGMA70_1	coord: 151..164
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 77..199 e-value: 1.5E-38 score: 135.2
None	No IPR available	PANTHER	PTHR30603:SF45	RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC	coord: 14..357
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 14..357
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 293..351 e-value: 8.30394E-10 score: 52.1066
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 208..285 e-value: 7.7E-14 score: 51.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 200..279 e-value: 4.9E-14 score: 54.5
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 287..363 e-value: 1.2E-16 score: 62.1
IPR009042	RNA polymerase sigma-70 region 1.2	PFAM	PF00140	Sigma70_r1_2	coord: 53..77 e-value: 1.8E-4 score: 21.4
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 300..352 e-value: 3.5E-11 score: 42.4
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 127..196 e-value: 2.3E-18 score: 65.8
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 123..351 e-value: 6.0E-30 score: 102.0
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 267..356
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 195..249
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 52..197

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_155	contig	Contig_155:289974..292686 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|177604	mRNA_15857	Tribonema minus UTEX_B_3156	mRNA	Contig_155 289974..292686 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|177604|e_gw1.155.4.1 ID=Trimin1|177604|e_gw1.155.4.1|Name=jgi.p|Trimin1|177604|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=364bp
MSSTAAVAVAEARRRRSTREAGSAKAAHDAIRPFLSQEGASESATAAKLF
MFDELGRAELLSHDQEVVLGKKIQQLMAMESLRDQLQAALRRPPTDDEWA
EACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLS
DLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKAIAYHSRTIRL
PVHVHNLLYSVRRARKALVLELGRTPTEAELAVRVGMPQDRLRRYLRASR
TTISTECPSGKPGFNPQDQVLGDTLEARDTVAPEDCAERGLFRTRLREVM
GALPEEERRVVTLRFGLEDGRTRSLAEVACASRCSKEWVRRTESRALRKL
RAPHHQQRCVALC*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000943	RNA_pol_sigma70
IPR007624	RNA_pol_sigma70_r3
IPR036388	WH-like_DNA-bd_sf
IPR009042	RNA_pol_sigma70_r1_2
IPR007630	RNA_pol_sigma70_r4
IPR007627	RNA_pol_sigma70_r2
IPR014284	RNA_pol_sigma-70_dom
IPR013324	RNA_pol_sigma_r3/r4-like
IPR013325	RNA_pol_sigma_r2