Trimin1|175447|e_gw1.125.53.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|175447
Unique NameTrimin1|175447|e_gw1.125.53.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length196
Homology
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: A0A836CME1_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CME1_9STRA)

HSP 1 Score: 413 bits (1061), Expect = 2.810e-146
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MTHTYPIQHDVLESQGFSKDGKQALRLYRCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGIH 195
            MTHTYPIQHDVLESQGFSKDGKQALRLYRCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGIH
Sbjct:    1 MTHTYPIQHDVLESQGFSKDGKQALRLYRCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGIH 195          
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: A0A835Z104_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z104_9STRA)

HSP 1 Score: 346 bits (887), Expect = 1.800e-116
Identity = 167/189 (88.36%), Postives = 172/189 (91.01%), Query Frame = 0
Query:    9 HDVLESQG--FSKDGKQALRLYRCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGIH 195
            HD  + +G   +K   +    YRCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPD+PEGREILELLKRAFEHRLLFTV TS TTGISN VVWASIHQKTRMDGGATAFG PDSGYFLRVKQELKAAGIH
Sbjct:  229 HDGGDCEGGASAKMASRRYAFYRCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDMPEGREILELLKRAFEHRLLFTVRTSLTTGISNMVVWASIHQKTRMDGGATAFGCPDSGYFLRVKQELKAAGIH 417          
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: D8LIP8_ECTSI (RING-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIP8_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 2.720e-55
Identity = 92/174 (52.87%), Postives = 113/174 (64.94%), Query Frame = 0
Query:   24 ALRLYRCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTIT---RTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGI 194
            AL L +C  H+MHA CI  VF    PKCPTC++ YG   GDQPDGTMT+    R  +  SGY + GTI++ Y  P G +    P PG  + G  R AYLPD   GRE+L LL+++FE R+ FTVGTS TTG SN V+W  +H KT   GG+++FGYPD GYF RVK EL A GI
Sbjct:  243 ALLLSQCQGHYMHAPCIMQVFKAMGPKCPTCSKMYGPLHGDQPDGTMTVRTHRRGAIPLSGYESDGTILIQYSFPSGTQSSKHPNPGSAYHGTSRTAYLPDNAAGREVLALLRKSFEQRMTFTVGTSITTGRSNCVIWNGVHHKTNTTGGSSSFGYPDPGYFGRVKAELLAKGI 416          
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: A0A3B3RZQ8_9TELE (E3 ubiquitin-protein ligase n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3RZQ8_9TELE)

HSP 1 Score: 179 bits (453), Expect = 1.140e-53
Identity = 85/163 (52.15%), Postives = 107/163 (65.64%), Query Frame = 0
Query:   32 SHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGI 194
            SH   ++C+        P+CP C   +G  +GDQP GTMT         G+S   TIV+ Y IPDG++ +  P PG+ F+G +R AYLP+  EG E+LELLKRAF  +L+FTVG SRTTG+S+TV+W  IH KT   GG T FGYPD GY LRVK+ELKA GI
Sbjct:   37 SHVFCSSCLDGAVKSMGPQCPVCKEIFGQVVGDQPKGTMTYDVIRARLPGFSKCDTIVINYSIPDGMQTERHPNPGKRFSGTERRAYLPNNREGNEVLELLKRAFAQKLIFTVGVSRTTGLSDTVIWNDIHHKTSQWGGPTGFGYPDHGYLLRVKEELKAKGI 199          
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: A0A3B3RY55_9TELE (E3 ubiquitin-protein ligase n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3RY55_9TELE)

HSP 1 Score: 179 bits (453), Expect = 1.290e-52
Identity = 85/163 (52.15%), Postives = 107/163 (65.64%), Query Frame = 0
Query:   32 SHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGI 194
            SH   ++C+        P+CP C   +G  +GDQP GTMT         G+S   TIV+ Y IPDG++ +  P PG+ F+G +R AYLP+  EG E+LELLKRAF  +L+FTVG SRTTG+S+TV+W  IH KT   GG T FGYPD GY LRVK+ELKA GI
Sbjct:  119 SHVFCSSCLDGAVKSMGPQCPVCKEIFGQVVGDQPKGTMTYDVIRARLPGFSKCDTIVINYSIPDGMQTERHPNPGKRFSGTERRAYLPNNREGNEVLELLKRAFAQKLIFTVGVSRTTGLSDTVIWNDIHHKTSQWGGPTGFGYPDHGYLLRVKEELKAKGI 281          
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: A0A3B4U397_SERDU (E3 ubiquitin-protein ligase n=1 Tax=Seriola dumerili TaxID=41447 RepID=A0A3B4U397_SERDU)

HSP 1 Score: 171 bits (432), Expect = 1.820e-50
Identity = 85/167 (50.90%), Postives = 106/167 (63.47%), Query Frame = 0
Query:   29 RCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDG-TMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGI 194
            RC  H     C+K  F    P CPTC R YG   G QPDG  MT+T+      GY+  GTI++ Y IP G++ +A P PG+P+ G  R AYLPD  EGR I++LL+RAF+ +L+FTVG S T+G +NTV W  IH KT   GG T +GYPD GY  RV+ ELKA GI
Sbjct:   37 RC-KHSFCRDCLKRAFDY-KPVCPTCGRLYGTLTGTQPDGGRMTVTKNSSSLPGYNKYGTIIIQYYIPSGIQKEAHPNPGQPYEGVSRTAYLPDSSEGRMIVKLLRRAFDQKLIFTVGQSTTSGRNNTVTWNDIHHKTSTHGGPTHYGYPDPGYMSRVQDELKAKGI 201          
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: A0A8C6U4R4_9GOBI (E3 ubiquitin-protein ligase n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6U4R4_9GOBI)

HSP 1 Score: 170 bits (430), Expect = 2.310e-50
Identity = 79/163 (48.47%), Postives = 104/163 (63.80%), Query Frame = 0
Query:   32 SHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGI 194
            SH   + CI  VF R  P CP CN ++G   G QP+GTM++TR+    SGY + G+IV+ Y    G++    P P +P+ G  R AYLPD  EG ++L+LLK+AFE RL+FT+G S TTG+ N + W  IH KT M GG   FGYPD GY  RV++EL+  GI
Sbjct:   22 SHSFCSQCIDTVF-RLKPACPICNTFHGVYTGTQPEGTMSVTRSGQSVSGYEHCGSIVIDYVFASGLQGPEHPNPDKPYRGTARTAYLPDCAEGEKVLKLLKKAFEQRLIFTIGQSATTGLHNVITWNDIHHKTSMKGGPECFGYPDPGYLSRVQEELRLKGI 183          
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: UPI000CD5E3E4 (uncharacterized protein LOC111854035 n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=UPI000CD5E3E4)

HSP 1 Score: 179 bits (453), Expect = 3.440e-50
Identity = 85/163 (52.15%), Postives = 107/163 (65.64%), Query Frame = 0
Query:   32 SHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGI 194
            SH   ++C+        P+CP C   +G  +GDQP GTMT         G+S   TIV+ Y IPDG++ +  P PG+ F+G +R AYLP+  EG E+LELLKRAF  +L+FTVG SRTTG+S+TV+W  IH KT   GG T FGYPD GY LRVK+ELKA GI
Sbjct:  362 SHVFCSSCLDGAVKSMGPQCPVCKEIFGQVVGDQPKGTMTYDVIRARLPGFSKCDTIVINYSIPDGMQTERHPNPGKRFSGTERRAYLPNNREGNEVLELLKRAFAQKLIFTVGVSRTTGLSDTVIWNDIHHKTSQWGGPTGFGYPDHGYLLRVKEELKAKGI 524          
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: A0A3Q1JLL6_ANATE (E3 ubiquitin-protein ligase n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1JLL6_ANATE)

HSP 1 Score: 170 bits (430), Expect = 3.770e-50
Identity = 80/156 (51.28%), Postives = 99/156 (63.46%), Query Frame = 0
Query:   39 CIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGI 194
            C+K       P CP C   +G   GDQPDG M++        GYS   TIV+TYDIP G + +  P PG+P+ G  R AYLPD  EGRE+L+LL++AF+ +L+FTVGTSRTTG+ N V W  IH KT   GG   FGYPD  Y  RV++ELKA GI
Sbjct:   47 CLKQAEKSLGPICPVCKDVFGVVEGDQPDGKMSVRTEYFSLPGYSYCQTIVITYDIPSGRQTEKHPKPGQPYHGISRSAYLPDNKEGREVLQLLRKAFDQKLIFTVGTSRTTGLENQVTWNDIHHKTSTSGGPQGFGYPDPDYLSRVREELKAKGI 202          
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Match: A0A674MIA3_TAKRU (E3 ubiquitin-protein ligase n=5 Tax=Takifugu TaxID=31032 RepID=A0A674MIA3_TAKRU)

HSP 1 Score: 169 bits (429), Expect = 3.820e-50
Identity = 79/175 (45.14%), Postives = 113/175 (64.57%), Query Frame = 0
Query:   20 DGKQALRLYRCGSHFMHAACIKAVFHRCSPKCPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRPQAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTTGISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGI 194
            D  Q  +  +C SH   + C+++ F R  P CP CN +YG   G+QP+GTMT+TR+     GY   G+IV+ Y  P G++    P PG  ++G  R+A+LP   EG ++L+LLK+AF+ +L+FTVG S TTG++N + W  IH KTRMDGG  +FGYPD  Y  RV++EL+  G+
Sbjct:   16 DRIQGKKTLKC-SHSFCSECLESSFKR-KPACPVCNTFYGTHTGNQPEGTMTVTRSQQRLPGYERCGSIVIHYIFPAGIQGSEHPNPGVRYSGTSRIAFLPACEEGEKVLKLLKKAFDRKLIFTVGRSVTTGLNNVITWNDIHHKTRMDGGPQSFGYPDPQYLSRVQEELRLKGV 188          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175447 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CME1_9STRA2.810e-146100.00RING-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
A0A835Z104_9STRA1.800e-11688.36RING-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
D8LIP8_ECTSI2.720e-5552.87RING-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
A0A3B3RZQ8_9TELE1.140e-5352.15E3 ubiquitin-protein ligase n=1 Tax=Paramormyrops ... [more]
A0A3B3RY55_9TELE1.290e-5252.15E3 ubiquitin-protein ligase n=1 Tax=Paramormyrops ... [more]
A0A3B4U397_SERDU1.820e-5050.90E3 ubiquitin-protein ligase n=1 Tax=Seriola dumeri... [more]
A0A8C6U4R4_9GOBI2.310e-5048.47E3 ubiquitin-protein ligase n=1 Tax=Neogobius mela... [more]
UPI000CD5E3E43.440e-5052.15uncharacterized protein LOC111854035 n=1 Tax=Param... [more]
A0A3Q1JLL6_ANATE3.770e-5051.28E3 ubiquitin-protein ligase n=1 Tax=Anabas testudi... [more]
A0A674MIA3_TAKRU3.820e-5045.14E3 ubiquitin-protein ligase n=5 Tax=Takifugu TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 4..58
e-value: 4.0E-5
score: 25.3
IPR039396Deltex, C-terminalPFAMPF18102DTCcoord: 63..194
e-value: 1.3E-52
score: 177.4
IPR039396Deltex, C-terminalCDDcd09633Deltex_Ccoord: 63..193
e-value: 1.58056E-68
score: 203.572
IPR039399Deltex, C-terminal domain superfamilyGENE3D3.30.390.130coord: 61..195
e-value: 2.1E-51
score: 175.6
NoneNo IPR availablePANTHERPTHR12622:SF41E3 UBIQUITIN-PROTEIN LIGASE DTX3Lcoord: 26..194
NoneNo IPR availableCDDcd16448RING-H2coord: 19..55
e-value: 3.19552E-4
score: 35.1203
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 23..76
IPR039398Deltex familyPANTHERPTHR12622DELTEX-RELATEDcoord: 26..194

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_125contigContig_125:401996..402952 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175447mRNA_14176Tribonema minus UTEX_B_3156 mRNAContig_125 401996..402952 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|175447|e_gw1.125.53.1 ID=Trimin1|175447|e_gw1.125.53.1|Name=jgi.p|Trimin1|175447|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=196bp
MTHTYPIQHDVLESQGFSKDGKQALRLYRCGSHFMHAACIKAVFHRCSPK
CPTCNRWYGAAMGDQPDGTMTITRTDMDCSGYSNAGTIVMTYDIPDGVRP
QAPPAPGRPFTGAKRVAYLPDIPEGREILELLKRAFEHRLLFTVGTSRTT
GISNTVVWASIHQKTRMDGGATAFGYPDSGYFLRVKQELKAAGIH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR039396Deltex_C
IPR039399Deltex_C_sf
IPR039398Deltex_fam