Trimin1|173095|e_gw1.100.83.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|173095
Unique NameTrimin1|173095|e_gw1.100.83.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length236
Homology
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: A0A835ZI68_9STRA (Tudor-knot domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI68_9STRA)

HSP 1 Score: 494 bits (1272), Expect = 4.080e-177
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query:    1 MHFLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAELMARGEEEGETVRRRSLNVACMAAPCGCSVM 235
            MHFLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAELMARGEEEGETVRRRSLNVACMAAPCGCSVM
Sbjct:    1 MHFLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAELMARGEEEGETVRRRSLNVACMAAPCGCSVM 235          
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: A0A835ZFT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT0_9STRA)

HSP 1 Score: 268 bits (685), Expect = 4.150e-87
Identity = 138/239 (57.74%), Postives = 169/239 (70.71%), Query Frame = 0
Query:    3 FLSLPELG-TLARLSKSWRQLSEHDYLWREPYKARFKISDSL--LAAGSDAA--VTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAELMARGEEEGETVRRRSL-NVACMAAPCGCSVM 235
            FL+L E G  +  +S+ WRQL EH++LWREPY  RFK       LA  ++A     P    K+ FARRL+ PQVGDRVEVAWRGKFRLESLE+++GLAWWLA++V    D +RYKVHYPGWE RWDE+V RERLRWGND RAA+L    + VGD VE+WCGG +VPGAWLEGRVS IR +R +LGD++A G FS+   RCRLV K    A  + EG +   R+L N+A  +  CGCSVM
Sbjct:   43 FLTLEERGKAVCCVSRKWRQLGEHNHLWREPYLTRFKFHSPQEDLATHTEAQELAQPGPKVKDLFARRLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIRGERVFLGDVVAEGFFSVTEERCRLVSKGA-SAPPQSEGRSDTARALCNIARQS--CGCSVM 278          
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: D7FY36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY36_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 2.130e-55
Identity = 92/169 (54.44%), Postives = 113/169 (66.86%), Query Frame = 0
Query:   59 KEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAELMARGEE----EGETVRRRSLNV 223
            K  + RRLL P VGD V+VAW+GKFRLESLEV+ G AWWLA VV + +    YKVHYPGWEP+WDEWV R+RLRWGN+  AA L G P++ GD VEVWC G+HVPGAWLE  V  +  +R YLG++L +G F       RL++K  +   G E         RRRS +V
Sbjct:  147 KGRYKRRLLDPHVGDEVQVAWKGKFRLESLEVYDGTAWWLARVVDKGEKPGYYKVHYPGWEPKWDEWVVRDRLRWGNEHLAAPLKGIPLQAGDAVEVWCKGLHVPGAWLEAVVYEVEKERVYLGEVLTSGHFWARTEHVRLIQKGPVDDDGGEFRLGYTSACRRRSNSV 315          
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: W7T606_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T606_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.540e-51
Identity = 92/233 (39.48%), Postives = 132/233 (56.65%), Query Frame = 0
Query:    3 FLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAELMARGEEEGETVRRRSLNVACMAAPCGCSVM 235
            F+S+ ELG  A + + W++  +   +W+  Y  RF    S   A +   +  PLS +  F  RLL P VGD VEVAW+GKFRLES++++ GLAWW A VV + ++  RYK+HYPGW+ RWDEWV+R+RLRW       + L   +   D VE+WC G +VPGAWLE +V  ++     +G +L++G   +   R R+  K    + G++       R    A  A    CSVM
Sbjct:  208 FMSISELGMAASVCQQWKETVQSVAVWKPLYIKRFHFLHSPDDASTGIGL--PLSYQALFRARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRW----TVEQDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSGALWVNRERVRISPKGGARSLGKQGASNFFSRDAAAAAAAVGASCSVM 434          
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: A0A4D9D060_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D060_9STRA)

HSP 1 Score: 168 bits (426), Expect = 7.790e-48
Identity = 80/186 (43.01%), Postives = 114/186 (61.29%), Query Frame = 0
Query:    3 FLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAG 188
            F+S+ ELG  A + + W++  +   +W+  Y  RF    S   A +   +  P+S    F  RLL P VGD VEVAW+GKFRLES++++ GLAWW A VV + ++  RYK+HYPGW+ RWDEWV R+RLRW       + L   +   D VE+WC G +VPGAWLE +V  ++     +G +L++G
Sbjct:   86 FMSISELGMAASVCQQWKETVQSGAVWKPLYIKRFHFLHSPDDASTGIGL--PVSYHALFRARLLDPYVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRW----TVEQDLNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVKGQTYCVGRVLSSG 265          
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: A0A7S4A403_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A403_9STRA)

HSP 1 Score: 159 bits (403), Expect = 9.020e-44
Identity = 96/234 (41.03%), Postives = 124/234 (52.99%), Query Frame = 0
Query:    1 MHFLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVV------ARSDDCRR----------YKVHYPGWEPRWDEWVSRERLRW-GNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAE--------LMARG 209
            + FL +    TL+ +S+ W  LS  D LWR+ Y  RF           + +       K+ + +RL  P VGD VEVAWRGKFRLESLE++ G AWW+A VV      A S    R          YKV +PGWE RWDEWVSR+RLRW   + + A  L    +  D VEVWCG  +VPGAWLE  V  IR D   +G +L+ G+  +  +R R  R +         L+ARG
Sbjct:  106 LSFLDVTAHTTLSTVSRDWLSLSSEDALWRDHYLNRFSGGSD--EGDGETSADEYEDYKQEYKQRLEDPHVGDDVEVAWRGKFRLESLEIYRGTAWWVAVVVDKVALDAASGSPGRGRKIHAAKAWYKVTFPGWEGRWDEWVSRDRLRWRAKNTQEADAL----KPRDFVEVWCGSQNVPGAWLEASVQKIRGDAVEVGRVLSTGSLWVDRSRVRRARSSSSRKVKPVGLLARG 333          
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: D8LI95_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI95_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 1.410e-43
Identity = 84/202 (41.58%), Postives = 116/202 (57.43%), Query Frame = 0
Query:    1 MHFLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAG--TFSIPLARCRLV 200
            M  L++ +LG +  ++K WR  +E D +WR  +  RF+         + A        K+    RL  P VGD+VEV+W G+FRLESL+VF G +WW A VV + D  + YK+HYPGW+  WDEWV R+RLRW  D      L     V + VEVWC G HV GAWL+ RV  I+ D+  L ++LA+   T  +P ++ R V
Sbjct:   38 MELLNMVDLGQVCCVNKDWRNAAEEDAVWRFWWARRFREDPPPQRGRARAG-----HLKQLHRYRLEDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKMDGFK-YKIHYPGWDSNWDEWVVRDRLRWPVDPS---YLSTTFRVREVVEVWCTGTHVKGAWLQARVRQIKQDQVSLKNVLASSPRTVWVPRSKVRRV 230          
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: A0A8J2SC81_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SC81_9STRA)

HSP 1 Score: 157 bits (397), Expect = 6.080e-43
Identity = 84/217 (38.71%), Postives = 119/217 (54.84%), Query Frame = 0
Query:    4 LSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSD---------DC-------RRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRKAE 204
            L +  L  +A +S++ R+ +  D  WR  Y  RF  +D         A     S +E+F +RL  P  GDRVE+AWRG+FRLE LEV+ GLAWW A+VV + D         DC       R+YKVHY  W+ RWDEWV+R++LRW        ++      GD VEVWC G  VPGAWL   V+ +  +   +GD+ ++G   +   R RL+++ +
Sbjct:   99 LDVKNLAAMAAVSRAARRAASSDAAWRPQYARRFGAADDASEHFDFGA-----SLRESFRQRLGDPAPGDRVEIAWRGRFRLEGLEVYRGLAWWAAEVVEKRDAXXXXXXAPDCPLDDRRARKYKVHYVHWDARWDEWVARDQLRWPVPEGRTGVVAS----GDDVEVWCSGSAVPGAWLRAVVTAVEGELYCVGDVASSGRLWVRRDRVRLIQRKQ 306          
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: A0A7S3K1B0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1B0_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.050e-34
Identity = 95/302 (31.46%), Postives = 134/302 (44.37%), Query Frame = 0
Query:    3 FLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDAAVTPPL--SCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLA--------DVVARSDDC--------------------------------------------------------------RRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVR-KAELMARGEEEGET-VRRRSLNV-ACMAAP 229
            F    +L  LA +S+ ++QL++ D  W+  Y   F          S A VT     S KE++ +R+  P  GDRVEVAW+G+FRLE LEV+ GLAWW A        D+ +  +D                                                               +RY+VHY  W+ RWDEWVSRE+LRW             +E+GD VEVWC G  VPGAWL   V  +  D   +G++ ++G   +   R RLVR KA+ +    ++ +T V RR   + +C+ AP
Sbjct:  151 FFPPKQLAHLASVSRGFKQLADSDASWQATYDRAF--------GNSKAGVTYDYGASLKESYHQRIRDPSTGDRVEVAWQGRFRLEGLEVYRGLAWWAAEVAEKRPNDIASNEEDMIPPEQFPPQHIDNQVVPHEQNHEVDLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNTSKRYRVHYLNWDSRWDEWVSREQLRWP----VQEGKNCTIEIGDDVEVWCSGNTVPGAWLRAVVDAVDDDLFCVGNVASSGHLWVSRDRVRLVRRKADRVLETTQDYDTAVHRRGRRLPSCLIAP 440          
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Match: A0A7S2XXB7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXB7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.430e-22
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 0
Query:  111 YKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVE---VGDTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLVRK 202
            YK+HYPGW+ RWDEWV R RLRW        +  +P+E   V D VEVWC G +VPGAWLE +V  I+ ++ ++G ML++G   +   R RL  K
Sbjct:    1 YKIHYPGWDTRWDEWVPRNRLRWA-------MHHNPMENFQVNDRVEVWCTGSNVPGAWLEAQVKAIKGEQIFVGKMLSSGPLWVAKTRVRLCPK 88          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173095 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A835ZI68_9STRA4.080e-177100.00Tudor-knot domain-containing protein n=1 Tax=Tribo... [more]
A0A835ZFT0_9STRA4.150e-8757.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FY36_ECTSI2.130e-5554.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7T606_9STRA1.540e-5139.48F-box domain-containing protein n=1 Tax=Nannochlor... [more]
A0A4D9D060_9STRA7.790e-4843.01F-box domain-containing protein n=1 Tax=Nannochlor... [more]
A0A7S4A403_9STRA9.020e-4441.03Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
D8LI95_ECTSI1.410e-4341.58F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A8J2SC81_9STRA6.080e-4338.71Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3K1B0_9STRA2.050e-3431.46Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2XXB7_9STRA2.430e-2247.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.140coord: 70..142
e-value: 3.6E-10
score: 41.7
IPR025995RNA binding activity-knot of a chromodomainPFAMPF11717Tudor-knotcoord: 104..132
e-value: 2.0E-5
score: 24.4
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 1..48
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 68..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_100contigContig_100:170538..171245 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173095mRNA_10011Tribonema minus UTEX_B_3156 mRNAContig_100 170538..171245 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|173095|e_gw1.100.83.1 ID=Trimin1|173095|e_gw1.100.83.1|Name=jgi.p|Trimin1|173095|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=236bp
MHFLSLPELGTLARLSKSWRQLSEHDYLWREPYKARFKISDSLLAAGSDA
AVTPPLSCKEAFARRLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLAD
VVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVG
DTVEVWCGGVHVPGAWLEGRVSCIRSDRAYLGDMLAAGTFSIPLARCRLV
RKAELMARGEEEGETVRRRSLNVACMAAPCGCSVM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025995Tudor-knot
IPR036047F-box-like_dom_sf
IPR016197Chromo-like_dom_sf