Trimin1|172955|e_gw1.98.22.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|172955
Unique NameTrimin1|172955|e_gw1.98.22.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length386
Homology
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BLAST of jgi.p|Trimin1|172955 vs. uniprot
Match: A0A836C7S8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7S8_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.230e-74
Identity = 385/385 (100.00%), Postives = 385/385 (100.00%), Query Frame = 0 
Query:    1 MRRCEHDSVLRVLQSLHGGGQAVSPALTALNLRYCNGIASPPESIIGQLPALKSLQLSWCRDLTDLPDSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLRELCLDRCASLGPVPEALRQQLRGLPLLRDGGGSCSAPAPPRVPLSAEAMEKLIRDHHRMHAEVAATVRTSDAIIREQRDSAADRLAALFH 385
            MRRCEHDSVLRVLQSLHGGGQAVSPALTALNLRYCNGIASPPESIIGQLPALKSLQLSWCRDLTDLPDSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLRELCLDRCASLGPVPEALRQQLRGLPLLRDGGGSCSAPAPPRVPLSAEAMEKLIRDHHRMHAEVAATVRTSDAIIREQRDSAADRLAALFH
Sbjct:    1 MRRCEHDSVLRVLQSLHGGGQAVSPALTALNLRYCNGIASPPESIIGQLPALKSLQLSWCRDLTDLPDSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLRELCLDRCASLGPVPEALRQQLRGLPLLRDGGGSCSAPAPPRVPLSAEAMEKLIRDHHRMHAEVAATVRTSDAIIREQRDSAADRLAALFH 385
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BLAST of jgi.p|Trimin1|172955 vs. uniprot
Match: A0A836CB49_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB49_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.930e-12
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 0 
Query:   26 ALTALNLRYCNGIASPPESIIGQLPALKSLQLSWCRDLTDLPDSLG 71
            ALT LNLR+C+G+ S PESIIGQLPAL+SLQL W +DLTDLPDSLG
Sbjct:    1 ALTELNLRFCDGLTSLPESIIGQLPALESLQLRWWQDLTDLPDSLG 46
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BLAST of jgi.p|Trimin1|172955 vs. uniprot
Match: A0A835YU90_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU90_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.410e-9
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 0 
Query:   23 VSPALTALNLRYCNGIASPPESIIGQLPALKSLQLSWCRDLTDLPDSLG 71
            ++PALTALNLR+CN + S PESIIGQL  LKSLQL  C+ LT LP+SLG
Sbjct:    1 MTPALTALNLRFCNSLDSLPESIIGQLAGLKSLQLIQCQVLTSLPESLG 49
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172955 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836C7S8_9STRA2.230e-74100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CB49_9STRA3.930e-1278.26Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YU90_9STRA3.410e-969.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 145..169
e-value: 46.0
score: 7.9
coord: 97..121
e-value: 94.0
score: 5.3
coord: 265..289
e-value: 77.0
score: 6.0
coord: 193..217
e-value: 190.0
score: 2.7
coord: 49..73
e-value: 40.0
score: 8.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 11..133
e-value: 5.0E-20
score: 73.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 134..322
e-value: 1.3E-43
score: 150.7
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 113..229
coord: 147..319
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 27..141
NoneNo IPR availablePANTHERPTHR16083:SF25SUBFAMILY NOT NAMEDcoord: 27..141
NoneNo IPR availablePANTHERPTHR16083:SF25SUBFAMILY NOT NAMEDcoord: 113..229
coord: 147..319
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 23..319

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_98contigContig_98:124635..125792 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172955mRNA_14891Tribonema minus UTEX_B_3156 mRNAContig_98 124635..125792 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|172955|e_gw1.98.22.1 ID=Trimin1|172955|e_gw1.98.22.1|Name=jgi.p|Trimin1|172955|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=386bp
MRRCEHDSVLRVLQSLHGGGQAVSPALTALNLRYCNGIASPPESIIGQLP
ALKSLQLSWCRDLTDLPDSLGQLTALTALQMAACARVARLPDSLGQLTSL
LALDLSDCAALTALPELACQLTALVELDMHGCVGLTHLPEALGDLCALTH
LNLSDCGQLERLPDSLGQLTALRTLRLAGCTALTALPASAWQLSSLTALN
LAGCQALSALPELLGELTALRQLQLSGCARVARLPDSLGQLASLTLLDAT
GCCALTRLPESLGGLAALTTLNLHHCAALTGLPESLGQLASLSLRELCLD
RCASLGPVPEALRQQLRGLPLLRDGGGSCSAPAPPRVPLSAEAMEKLIRD
HHRMHAEVAATVRTSDAIIREQRDSAADRLAALFH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf