Trimin1|172908|e_gw1.98.7.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|172908
Unique Name	Trimin1\|172908\|e_gw1.98.7.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	181

Homology

[Close]

BLAST of jgi.p|Trimin1|172908 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 368 bits (944), Expect = 6.220e-129
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0

Query:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVWAPQVWHVTVEV 180
            MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVWAPQVWHVTVEV
Sbjct:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVWAPQVWHVTVEV 180

[Close]

BLAST of jgi.p|Trimin1|172908 vs. uniprot
Match: A0A7S2RL84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL84_9STRA)

HSP 1 Score: 218 bits (554), Expect = 1.960e-69
Identity = 107/171 (62.57%), Postives = 136/171 (79.53%), Query Frame = 0

Query:    1 MNVVREIQKINERELKEGLTGSA-SWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEG-GEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVW 169
            MNV++EI++INE EL  G+ G A SWH +Y+DSA+VFVGGL Y+L EGDV+CV SQWGE+EDINLVRD+ TGKSKGFAF+KYEDQRST+LAVDN NG +LLGR +RVDHV KY+LP  L++KE+A++E  G  G EG GE  S   ++PGHAYEG E+     + +GVD++
Sbjct:    2 MNVIQEIKRINEEELSRGVAGGAGSWHAQYRDSAYVFVGGLPYDLVEGDVLCVFSQWGEVEDINLVRDEKTGKSKGFAFIKYEDQRSTVLAVDNFNGVELLGRLIRVDHVAKYKLPSHLREKEEAEEENSGHYGPEGDGEEESK--YRPGHAYEGAELANKFNIHKGVDLY 170

[Close]

BLAST of jgi.p|Trimin1|172908 vs. uniprot
Match: A0A4D9D1V2_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V2_9STRA)

HSP 1 Score: 223 bits (569), Expect = 6.740e-69
Identity = 118/176 (67.05%), Postives = 141/176 (80.11%), Query Frame = 0

Query:    1 MNVVREIQKINERELKEGLTG-SASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKEL----QDKEDAQQEGGGEQGGEGGEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVWAP 171
            MNVVREIQ++NE+EL+ G  G   SWH +YKDSAWVFVG L  +L+EGDV+CV+SQWGEIED++LVRD+ TGKSKGFAF+KYEDQRSTILAVDNMNG +LL R LRVDH EKY LPKE+    ++KE A+ E G E GG GG PR    WKPGHAYEGKE+   H L++GVD++AP
Sbjct:    1 MNVVREIQRLNEKELQRGTAGMEGSWHGQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFLKYEDQRSTILAVDNMNGIKLLERTLRVDHKEKYALPKEVLEKAEEKEKARLEAG-EDGGGGG-PR----WKPGHAYEGKELVEGHDLSKGVDLFAP 170

[Close]

BLAST of jgi.p|Trimin1|172908 vs. uniprot
Match: K3WVC5_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVC5_GLOUD)

HSP 1 Score: 219 bits (558), Expect = 1.270e-68
Identity = 108/170 (63.53%), Postives = 136/170 (80.00%), Query Frame = 0

Query:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVWA 170
            MNV+ EI +INEREL+ G+    SWH KYKDSAWV+VGGL +EL+EGDV+CVLSQ+GEIED+NLVRD  TGKSKGFAFVKYEDQRST+LAVDNMNGA++L R +RVDHV KY+LPKE+QD+EDA+++       +  +P+      PGHAYEGKE+ G + +A G +V+A
Sbjct:    1 MNVIAEIHRINERELELGVPYEGSWHQKYKDSAWVYVGGLPFELSEGDVLCVLSQFGEIEDLNLVRDAKTGKSKGFAFVKYEDQRSTVLAVDNMNGARILERIIRVDHVLKYKLPKEIQDREDAKEQAALSSDDDAAKPKQRGL--PGHAYEGKELDGKYDIAHGHNVFA 168

[Close]

BLAST of jgi.p|Trimin1|172908 vs. uniprot
Match: D7FPK4_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPK4_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 4.520e-67
Identity = 106/173 (61.27%), Postives = 135/173 (78.03%), Query Frame = 0

Query:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDK---EDAQQEGGGEQGGEGGEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVWA 170
            MNV++EI++INEREL++G++G ASWHH+YKDSAWVF GG  Y+LTEGD++CV+SQWGEIEDINL R++DTGKSKGF F+KYE+Q+STILAVDN NG  LLGR +RVDH  KY LP E+++K   ED ++   GE   E G       W+PG AYEGK++  SH   +GVDV+A
Sbjct:    1 MNVIQEIKRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKG-----PQWRPGVAYEGKQLATSHNFHKGVDVFA 168

[Close]

BLAST of jgi.p|Trimin1|172908 vs. uniprot
Match: A0A662XAL0_9STRA (RRM domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XAL0_9STRA)

HSP 1 Score: 212 bits (540), Expect = 4.960e-66
Identity = 107/170 (62.94%), Postives = 135/170 (79.41%), Query Frame = 0

Query:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVWA 170
            MNV+ EIQ+INE EL  G+  + SWH KY +SAWV+VGGL +EL+EGDV+CVLSQ+GEIED+NLVRD  TGKSKGFAFVK++DQRST+LAVDN+NGA++L R +RVDHV KY+LPKEL+D++D  ++G   +     EPR      PGHAYEGKE+  S  +AQGVDV+A
Sbjct:    1 MNVIAEIQRINESELALGVPLAGSWHQKYHESAWVYVGGLPFELSEGDVLCVLSQFGEIEDLNLVRDVKTGKSKGFAFVKFQDQRSTVLAVDNLNGARILERVIRVDHVLKYKLPKELRDRDDEAEDGSSSEAE--AEPRRPRGL-PGHAYEGKELASSFDIAQGVDVFA 167

[Close]

BLAST of jgi.p|Trimin1|172908 vs. uniprot
Match: A0A7S1C5P3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5P3_9STRA)

HSP 1 Score: 209 bits (531), Expect = 6.330e-66
Identity = 102/170 (60.00%), Postives = 131/170 (77.06%), Query Frame = 0

Query:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVWA 170
            MNVVREI++INE EL+ G++ SASWH +Y+ SAWV+VGGL  ELTEGDV+CV SQWGEIED+ LVRD++TGKSKGFAF+KYEDQRST+LAVDN NGA+LLGR LRVDH  +Y+ PK+ +D++D   E         G+     A  PGHAY  KE+   +++++GVDV+A
Sbjct:    1 MNVVREIERINEEELRAGISESASWHARYRSSAWVYVGGLSSELTEGDVVCVFSQWGEIEDVVLVRDEETGKSKGFAFIKYEDQRSTVLAVDNGNGAKLLGRTLRVDHKLEYQAPKKKKDRKDGYNEDSS------GDDDELKAHAPGHAYAEKELASGYSISRGVDVFA 164

[Close]

BLAST of jgi.p|Trimin1|172908 vs. uniprot
Match: A0A3R7KWJ4_9STRA (RRM domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KWJ4_9STRA)

HSP 1 Score: 211 bits (536), Expect = 8.210e-66
Identity = 109/176 (61.93%), Postives = 134/176 (76.14%), Query Frame = 0

Query:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVW-APQVWH 175
            MNVV EIQ++NEREL+ G+T SASWHHKY++SAW+F+GGL +EL+EGDV+CV+SQ+GEIEDI+LVRD  TGKSKGFAF+KYE+QRST+LAVDN+NG +LL R LRVDHV KYRLPKELQ+  D               PR      PGHAYEGKE+     + +GVDV+ AP+  H
Sbjct:    1 MNVVAEIQRLNERELELGVTASASWHHKYRESAWLFIGGLSFELSEGDVLCVMSQFGEIEDIHLVRDAKTGKSKGFAFIKYENQRSTVLAVDNLNGFRLLDRVLRVDHVLKYRLPKELQEDSDXXXXXXXXXX-----PRGL----PGHAYEGKELASEFDIQKGVDVFKAPEETH 167

[Close]

BLAST of jgi.p|Trimin1|172908 vs. uniprot
Match: W2N0T6_PHYPR (RRM domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2N0T6_PHYPR)

HSP 1 Score: 210 bits (534), Expect = 2.870e-65
Identity = 109/170 (64.12%), Postives = 131/170 (77.06%), Query Frame = 0

Query:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVWA 170
            MNVV EIQ++NEREL+  +  S SWH KY +SAWVFVGGL +EL+EGDV+CVLSQ+GEIEDI+LVRD  TGKSKGFAF+K+EDQRSTILAVDN+NG +LL R LRVDHV KY+LPKELQ+  D++ EG  +Q G            PGHAYEGKE+     L +GVDV+A
Sbjct:    1 MNVVAEIQRLNERELELNVPLSGSWHQKYSESAWVFVGGLPFELSEGDVLCVLSQFGEIEDIHLVRDGKTGKSKGFAFIKFEDQRSTILAVDNLNGFKLLDRVLRVDHVLKYKLPKELQEDSDSEDEGDRKQRG-----------LPGHAYEGKELASDFDLHKGVDVFA 159

[Close]

BLAST of jgi.p|Trimin1|172908 vs. uniprot
Match: A0A7S3YEY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEY6_HETAK)

HSP 1 Score: 210 bits (534), Expect = 3.060e-65
Identity = 104/170 (61.18%), Postives = 134/170 (78.82%), Query Frame = 0

Query:    1 MNVVREIQKINERELKEGLTGS-ASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVW 169
            MNV++EI++IN+REL+ GLTG+ ASWH KYK+SAWV+VG + Y LTEGD++C +SQWGEIEDIN VRD+DTGK KGFAFVKYEDQRST+LAVDN NG +L+ R LRVDH EKYRLPKE+QDKED  +E     G +     S++ + PGHAY+  E+   + +A+G D++
Sbjct:    1 MNVIQEIKRINDRELEAGLTGTDASWHSKYKNSAWVYVGSIPYALTEGDILCFMSQWGEIEDINYVRDKDTGKPKGFAFVKYEDQRSTVLAVDNFNGIELVDRTLRVDHCEKYRLPKEVQDKEDQLEEDAKLLGKQ---HDSSSKFGPGHAYKDMELASKYDIAKGQDLF 167

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|172908 vs. uniprot

BLAST of jgi.p|Trimin1|172908 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YJH4_9STRA	6.220e-129	100.00	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S2RL84_9STRA	1.960e-69	62.57	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
A0A4D9D1V2_9STRA	6.740e-69	67.05	RRM domain-containing protein n=1 Tax=Nannochlorop...	[more]
K3WVC5_GLOUD	1.270e-68	63.53	RRM domain-containing protein n=1 Tax=Globisporang...	[more]
D7FPK4_ECTSI	4.520e-67	61.27	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A662XAL0_9STRA	4.960e-66	62.94	RRM domain-containing protein n=1 Tax=Nothophytoph...	[more]
A0A7S1C5P3_9STRA	6.330e-66	60.00	Hypothetical protein (Fragment) n=1 Tax=Bicosoecid...	[more]
A0A3R7KWJ4_9STRA	8.210e-66	61.93	RRM domain-containing protein n=3 Tax=Phytophthora...	[more]
W2N0T6_PHYPR	2.870e-65	64.12	RRM domain-containing protein n=11 Tax=Phytophthor...	[more]
A0A7S3YEY6_HETAK	3.060e-65	61.18	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 34..107 e-value: 1.2E-21 score: 87.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 35..105 e-value: 5.8E-19 score: 67.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 33..111 score: 17.659899
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..108 e-value: 2.3E-27 score: 97.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..151
None	No IPR available	PANTHER	PTHR45880:SF1	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..128
None	No IPR available	PANTHER	PTHR45880	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..128
IPR045844	Ist3-like, RNA recognition motif	CDD	cd12411	RRM_ist3_like	coord: 24..112 e-value: 9.31841E-64 score: 189.387
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 24..133

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_98	contig	Contig_98:395727..398749 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|172908	mRNA_14921	Tribonema minus UTEX_B_3156	mRNA	Contig_98 395727..398749 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|172908|e_gw1.98.7.1 ID=Trimin1|172908|e_gw1.98.7.1|Name=jgi.p|Trimin1|172908|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=181bp
MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVI
CVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLL
GRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAAWKPGHA
YEGKEIRGSHTLAQGVDVWAPQVWHVTVEV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR045844	RRM_Ist3-like
IPR035979	RBD_domain_sf