Trimin1|172800|e_gw1.96.23.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|172800
Unique Name	Trimin1\|172800\|e_gw1.96.23.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	110

Homology

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BLAST of jgi.p|Trimin1|172800 vs. uniprot
Match: A0A836C7M6_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7M6_9STRA)

HSP 1 Score: 212 bits (539), Expect = 1.780e-69
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0

Query:    1 MAHSEEEFAALHPGPVTVRVQCPADDQGEAAAWNLTGQVVPVTLSAGVRATVKELKDALGAALGGAMPANKAQLRDGARGFLRDAATLAAYNLGGGAVVDLVPRKRGGR 109
            MAHSEEEFAALHPGPVTVRVQCPADDQGEAAAWNLTGQVVPVTLSAGVRATVKELKDALGAALGGAMPANKAQLRDGARGFLRDAATLAAYNLGGGAVVDLVPRKRGGR
Sbjct:    1 MAHSEEEFAALHPGPVTVRVQCPADDQGEAAAWNLTGQVVPVTLSAGVRATVKELKDALGAALGGAMPANKAQLRDGARGFLRDAATLAAYNLGGGAVVDLVPRKRGGR 109

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BLAST of jgi.p|Trimin1|172800 vs. uniprot
Match: A0A4D9CLT9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLT9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.350e-16
Identity = 51/110 (46.36%), Postives = 72/110 (65.45%), Query Frame = 0

Query:    4 SEEEFAALHPGPVTVRVQCPADDQGEAAAWNLTGQVVPVTLSAGVRATVKELKDALGAALGGAMPANKAQLRDGARG-FLRDAATLAAYNLGGGA---VVDLVPRKRGGR 109
            SE  +A+ +PG  ++ +Q P D+   A  WNL GQ+V + + + V +TV+E+K+ L   LGG MP NK QLR+  +G FL+DA TLA+YNLG      V++LV R RGGR
Sbjct:  639 SESAYASANPGAGSISIQAPQDES--ATTWNLKGQLVKLEIGS-VMSTVREVKEQLSPLLGG-MPPNKMQLRNAEQGVFLKDAQTLASYNLGAAGSSTVLELVTRSRGGR 744

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BLAST of jgi.p|Trimin1|172800 vs. uniprot
Match: K8Z790_NANGC (Splicing factor 3A subunit 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z790_NANGC)

HSP 1 Score: 80.5 bits (197), Expect = 1.850e-15
Identity = 51/110 (46.36%), Postives = 72/110 (65.45%), Query Frame = 0

Query:    4 SEEEFAALHPGPVTVRVQCPADDQGEAAAWNLTGQVVPVTLSAGVRATVKELKDALGAALGGAMPANKAQLRDGARG-FLRDAATLAAYNLGGGA---VVDLVPRKRGGR 109
            SE  +A+ + G  ++ +Q P D+   AA WNL GQ+V + + + V +TV+E+K+ L   LGG MP NK QLR+  +G FL+DA TLA+YNLG      V++LV R RGGR
Sbjct:  325 SESAYASANTGAGSISIQAPQDES--AATWNLKGQLVKLEIGS-VMSTVREVKEQLSPLLGG-MPPNKMQLRNAEQGVFLKDAQTLASYNLGAAGSSTVLELVTRSRGGR 430

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BLAST of jgi.p|Trimin1|172800 vs. uniprot
Match: A0A6V1NSN5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NSN5_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 8.090e-14
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 0

Query:    5 EEEFAALHPGPVTVRVQCPADDQGEAAAWNLTGQVVPVTLSAGVRATVKELKDALGAALGGAMPANKAQLRDGARGFLRDAATLAAYNLGGGAVVDLVPRKRGGR 109
            E+EFAA   GPV + V+ P D     A+ +L      +++S  V + V+E K+A+   LGG +P NK QLR    GFL+DA +LA YNLG  A V++  R RGGR
Sbjct:   11 EDEFAATCDGPVLLNVEVPED---VGASQSL------ISISLPVMSQVREAKEAVAQRLGGDLPLNKFQLRHPRAGFLKDALSLAHYNLGNNATVEVNMRTRGGR 106

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BLAST of jgi.p|Trimin1|172800 vs. uniprot
Match: A0A8J2SH94_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SH94_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.700e-13
Identity = 47/94 (50.00%), Postives = 59/94 (62.77%), Query Frame = 0

Query:   16 VTVRVQCPADDQGEAAAWNLTGQVVPVTLSAGVRATVKELKDALGAALGGAMPANKAQLRDGARGFLRDAATLAAYNLGGGAVVDLVPRKRGGR 109
            VTVRV+CP DD    AAW+L GQ V V +      T+KE+K  L A LG  MP NK QL+    GFL+DA +LA +N+  G ++DLV R RG R
Sbjct:  606 VTVRVKCPLDDSN--AAWSLLGQEVSVEVDCDC--TIKEVKSRLKAQLG--MPENKQQLKHSRLGFLKDALSLAHFNVASGTLLDLVVRARGRR 693

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BLAST of jgi.p|Trimin1|172800 vs. uniprot
Match: A0A6P4C793_ARADU (probable splicing factor 3A subunit 1 n=2 Tax=Arachis TaxID=3817 RepID=A0A6P4C793_ARADU)

HSP 1 Score: 71.2 bits (173), Expect = 3.860e-12
Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = 0

Query:    5 EEEFAALHPGPVTVRVQCPADDQGEAAAWNLTGQVVPVTLSAGVRATVKELKDALGAALGGAMPANKAQLRDGARGFLRDAATLAAYNLGGGAVVDLVPRKRGGR 109
            E++F A HPGP+ + V  P  D+G     NL GQV+ +T+ + +  TV  LK+ +   +   +PANK +L  G  GFL+D  +LA YN+GGG ++ L  R+RGGR
Sbjct:  719 EDQFLAQHPGPLRISVSVPNHDEG-----NLKGQVLEITVQS-LSETVGSLKEKIAGEI--QLPANKQKL-SGKPGFLKDNMSLAHYNVGGGEILTLSLRERGGR 814

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BLAST of jgi.p|Trimin1|172800 vs. uniprot
Match: A0A445BEY0_ARAHY (Uncharacterized protein n=2 Tax=Arachis hypogaea TaxID=3818 RepID=A0A445BEY0_ARAHY)

HSP 1 Score: 71.2 bits (173), Expect = 3.960e-12
Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = 0

Query:    5 EEEFAALHPGPVTVRVQCPADDQGEAAAWNLTGQVVPVTLSAGVRATVKELKDALGAALGGAMPANKAQLRDGARGFLRDAATLAAYNLGGGAVVDLVPRKRGGR 109
            E++F A HPGP+ + V  P  D+G     NL GQV+ +T+ + +  TV  LK+ +   +   +PANK +L  G  GFL+D  +LA YN+GGG ++ L  R+RGGR
Sbjct: 1130 EDQFLAQHPGPLRISVSVPNHDEG-----NLKGQVLEITVQS-LSETVGSLKEKIAGEI--QLPANKQKL-SGKPGFLKDNMSLAHYNVGGGEILTLSLRERGGR 1225

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BLAST of jgi.p|Trimin1|172800 vs. uniprot
Match: A0A2J6KII3_LACSA (Uncharacterized protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6KII3_LACSA)

HSP 1 Score: 70.5 bits (171), Expect = 7.180e-12
Identity = 43/105 (40.95%), Postives = 65/105 (61.90%), Query Frame = 0

Query:    5 EEEFAALHPGPVTVRVQCPADDQGEAAAWNLTGQVVPVTLSAGVRATVKELKDALGAALGGAMPANKAQLRDGARGFLRDAATLAAYNLGGGAVVDLVPRKRGGR 109
            E++F A HPGP+ + V  P  D+G     NL GQ++ +T+ + +  TV  LK+ +   +   +PANK +L  G  GFL+D  +LA YN+GGG ++ L  R+RGGR
Sbjct:  696 EDQFLAQHPGPIRIAVSVPNLDEG-----NLKGQILEITIQS-LSETVGSLKEKIAGDI--QLPANKQKL-SGKAGFLKDNLSLAYYNVGGGEMLSLSLRERGGR 791

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BLAST of jgi.p|Trimin1|172800 vs. uniprot
Match: UPI0010A3149D (probable splicing factor 3A subunit 1 n=3 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A3149D)

HSP 1 Score: 70.5 bits (171), Expect = 7.200e-12
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 0

Query:    5 EEEFAALHPGPVTVRVQCPADDQGEAAAWNLTGQVVPVTLSAGVRATVKELKDALGAALGGAMPANKAQLRDGARGFLRDAATLAAYNLGGGAVVDLVPRKRGGR 109
            E++F A HPGPV + +  P  D+G     NL GQV+ + + + +  TV  LK+ +   +   +PANK +L  G  GFL+D  +LA YN+GGG V+ L  R+RGGR
Sbjct:  716 EDQFLAQHPGPVRICISIPNIDEG-----NLRGQVLEIAMQS-LSETVGSLKEKIAGEI--QLPANKQKL-SGKPGFLKDNMSLAYYNVGGGEVLSLTLRERGGR 811

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BLAST of jgi.p|Trimin1|172800 vs. uniprot
Match: UPI001CB96BF2 (probable splicing factor 3A subunit 1 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB96BF2)

HSP 1 Score: 68.2 bits (165), Expect = 4.650e-11
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 0

Query:    5 EEEFAALHPGPVTVRVQCPADDQGEAAAWNLTGQVVPVTLSAGVRATVKELKDALGAALGGAMPANKAQLRDGARGFLRDAATLAAYNLGGGAVVDLVPRKRGGR 109
            E++F A HPGPV + V  P  D+G     NL GQ++ +T+ + +   V  LK+ +   +   +P+NK +L  G  GFL+D  +LA YN+GGG ++ L  R+RGGR
Sbjct:  709 EDQFLAQHPGPVRITVSVPNVDEG-----NLKGQLLEITVQS-LSENVGSLKEKIAGEI--QLPSNKQKL-SGKAGFLKDNLSLAYYNVGGGEILSLSLRERGGR 804

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|172800 vs. uniprot

BLAST of jgi.p|Trimin1|172800 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15


Match Name	E-value	Identity	Description
A0A836C7M6_9STRA	1.780e-69	100.00	Ubiquitin-like domain-containing protein n=1 Tax=T...	[more]
A0A4D9CLT9_9STRA	6.350e-16	46.36	Uncharacterized protein n=1 Tax=Nannochloropsis sa...	[more]
K8Z790_NANGC	1.850e-15	46.36	Splicing factor 3A subunit 1 n=1 Tax=Nannochlorops...	[more]
A0A6V1NSN5_HETAK	8.090e-14	43.81	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A8J2SH94_9STRA	1.700e-13	50.00	Hypothetical protein n=2 Tax=Pelagomonas calceolat...	[more]
A0A6P4C793_ARADU	3.860e-12	41.90	probable splicing factor 3A subunit 1 n=2 Tax=Arac...	[more]
A0A445BEY0_ARAHY	3.960e-12	41.90	Uncharacterized protein n=2 Tax=Arachis hypogaea T...	[more]
A0A2J6KII3_LACSA	7.180e-12	40.95	Uncharacterized protein n=2 Tax=Lactuca TaxID=4235...	[more]
UPI0010A3149D	7.200e-12	41.90	probable splicing factor 3A subunit 1 n=3 Tax=Pros...	[more]
UPI001CB96BF2	4.650e-11	40.00	probable splicing factor 3A subunit 1 n=1 Tax=Erig...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 1..109 e-value: 1.9E-15 score: 58.7
None	No IPR available	PANTHER	PTHR15316:SF1	SPLICING FACTOR 3A SUBUNIT 1	coord: 4..109
IPR045146	Splicing factor 3A subunit 1	PANTHER	PTHR15316	SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED	coord: 4..109
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 42..108 score: 9.41707
IPR035563	Splicing factor 3A subunit 1, ubiquitin domain	CDD	cd01800	Ubl_SF3a120	coord: 15..104 e-value: 9.50392E-26 score: 89.9399
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 7..108

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_96	contig	Contig_96:68841..69170 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|172800	mRNA_13038	Tribonema minus UTEX_B_3156	mRNA	Contig_96 68841..69170 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|172800|e_gw1.96.23.1 ID=Trimin1|172800|e_gw1.96.23.1|Name=jgi.p|Trimin1|172800|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=110bp
MAHSEEEFAALHPGPVTVRVQCPADDQGEAAAWNLTGQVVPVTLSAGVRA
TVKELKDALGAALGGAMPANKAQLRDGARGFLRDAATLAAYNLGGGAVVD
LVPRKRGGR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR045146	SF3A1
IPR000626	Ubiquitin-like_dom
IPR035563	SF3As1_ubi
IPR029071	Ubiquitin-like_domsf