Trimin1|172326|e_gw1.91.88.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|172326
Unique NameTrimin1|172326|e_gw1.91.88.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length204
Homology
BLAST of jgi.p|Trimin1|172326 vs. uniprot
Match: A0A836C7F4_9STRA (Pseudouridine synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7F4_9STRA)

HSP 1 Score: 423 bits (1087), Expect = 5.830e-150
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
Query:    1 MTSATWGYSEYARHAYAPSDAAAWQVLVDVLGVDESRARYIIVFGGFYLMPPGDVKARRVSDPTHAMTKGQYMRIHPMPRQYPVCATTDWDASVLQENDWCMLVNKPAAVPSHPTVDNLHHNVVACLKPLRPGTQISAAHRLDVATSGLIVMCKRPSFMTAFSALHAAGAISKRYTALLRLPHVPLGVLTHYMMRSSCAPKIYR 204
            MTSATWGYSEYARHAYAPSDAAAWQVLVDVLGVDESRARYIIVFGGFYLMPPGDVKARRVSDPTHAMTKGQYMRIHPMPRQYPVCATTDWDASVLQENDWCMLVNKPAAVPSHPTVDNLHHNVVACLKPLRPGTQISAAHRLDVATSGLIVMCKRPSFMTAFSALHAAGAISKRYTALLRLPHVPLGVLTHYMMRSSCAPKIYR
Sbjct:    1 MTSATWGYSEYARHAYAPSDAAAWQVLVDVLGVDESRARYIIVFGGFYLMPPGDVKARRVSDPTHAMTKGQYMRIHPMPRQYPVCATTDWDASVLQENDWCMLVNKPAAVPSHPTVDNLHHNVVACLKPLRPGTQISAAHRLDVATSGLIVMCKRPSFMTAFSALHAAGAISKRYTALLRLPHVPLGVLTHYMMRSSCAPKIYR 204          
BLAST of jgi.p|Trimin1|172326 vs. uniprot
Match: A0A6H5JA94_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA94_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 3.000e-30
Identity = 62/148 (41.89%), Postives = 86/148 (58.11%), Query Frame = 0
Query:   10 EYARHAYAPSDAAAWQVLVDVLGVDESRARYIIVFGGFYLMP---PGDVKARRVSDPTHAMTKGQYMRIHPMPRQYPVCATTDWDASVLQENDWCMLVNKPAAVPSHPTVDNLHHNVVACLKPLRPGTQISAAHRLDVATSGLIVMCK 154
            +Y RHAY+P     W  +   LG  E  AR +I FGG Y  P   P   K +R  DP   +  G+Y+RI P PR+YP     DW++ ++ +    MLVNKPA VP+H TVDN   N++A ++ +RPG  +   HRLD  TSGL+++ K
Sbjct:   71 DYVRHAYSPRAGPLWSSVAAFLGWTEELARGLITFGGVYYKPGGAPASAKPKRELDPDREVEIGEYLRIFPKPRRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENMLAGIRGVRPGLDLLLPHRLDNDTSGLVIVAK 218          
BLAST of jgi.p|Trimin1|172326 vs. uniprot
Match: D7G4K2_ECTSI (Putative RNA pseudouridylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K2_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.900e-29
Identity = 61/149 (40.94%), Postives = 86/149 (57.72%), Query Frame = 0
Query:   10 EYARHAYAPSDAAAWQVLVDVLGVDESRARYIIVFGGFYLMP---PGDVKARRVSDPTHAMTKGQYMRIHPMPRQYPVCATTDWDASVLQENDWCMLVNKPAAVPSHPTVDNLHHNVVACLKPLRPGTQISAAHRLDVATSGLIVMCKR 155
            +Y RHAY+P     W  +   LG  E  AR +I FGG Y  P   P   K +R  DP   +  G+Y+RI P PR+YP     DW++ ++ +    MLVNKPA VP+H TVDN   N++A ++ +RP   +   HRLD+ TSGL+++  R
Sbjct:   47 DYVRHAYSPRAGPLWSSVAAFLGWTEELARGLITFGGVYYKPGGAPALAKPKRELDPDREVEIGEYLRIFPEPRRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENMLAGIRSVRPDLDLLLPHRLDIDTSGLVIVVTR 195          
BLAST of jgi.p|Trimin1|172326 vs. uniprot
Match: A0A7S0TTK8_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TTK8_HEMAN)

HSP 1 Score: 105 bits (261), Expect = 2.330e-24
Identity = 62/181 (34.25%), Postives = 94/181 (51.93%), Query Frame = 0
Query:   27 LVDVLGVDESRARYIIVFGGFYLMPPGDVKARRVSDPTHAMT-KGQYMRIHPMPRQYPVCATTDWDASVLQENDWCMLVNKPAAVPSHPTVDNLHHNVVACLKPLRPGT--QISAAHRLDVATSGLIVMCKRPSFMTAFSALHAAGAISKRYTALLRLPHVPLGVLTHYMMRSSCAPKIYR 204
            L D+L +DE  A++++  G  ++      K R  +   +A+  +G Y+R+HP PR++PV  T DW   ++  N   ++VNKP  +P H ++DN      AC +         ISA HRLDV T GL+ + + P F   FS L     + K Y AL   P   LG + HYM  S  +P++ R
Sbjct:   56 LTDLLDMDEEHAKWLVDMGAVFID-----KVRVGAGAYNAIVPQGSYLRVHPSPRRFPVAWTADWQKRLVHVNSNYVIVNKPGGLPCHASLDNAKETTEACAERALSAEVGSISALHRLDVPTHGLMCLGRTPFFAAHFSRLLRMRRVRKEYLALASAPP-QLGSMVHYMRPSERSPRVVR 230          
BLAST of jgi.p|Trimin1|172326 vs. uniprot
Match: A0A2H0WDZ0_9PROT (RluA family pseudouridine synthase n=1 Tax=Bdellovibrio sp. CG10_big_fil_rev_8_21_14_0_10_47_8 TaxID=1975526 RepID=A0A2H0WDZ0_9PROT)

HSP 1 Score: 99.4 bits (246), Expect = 1.490e-21
Identity = 66/197 (33.50%), Postives = 96/197 (48.73%), Query Frame = 0
Query:    7 GYSEYARHAYAPSDAAAWQVLVDVLGVDESRARYIIVFGGFYLMPPGDVKARRVSDPTHAMT-KGQ-YMRIHPMPRQYPVCATTDWDASVLQENDWCMLVNKPAAVPSHPTVDNLHHNVVACLKPLRPGTQISAAHRLDVATSGLIVMCKRPSFMTAFSALHAAGAISKRYTALLRLPHVPLGVLTHYMMRSSCAPK 201
            G+    RH  +P +    QVL   LG+   + R ++  G  YL      + +R+++       K Q Y+RIH  PR++P+         V  E+D   +VNKPA +P HP+VDN+  NV+  LK       +   HRLDVAT GL+V  K     +  ++   +G   K Y AL+    +P G   HYM  S  APK
Sbjct:   15 GFQYGVRHLLSPLNGTLEQVLEKSLGLTSDQTRALLHLGAIYL------QGKRLNESAQQTEIKAQTYLRIHQTPRRFPIEKLNPTQCLVY-EDDGLFIVNKPAGLPVHPSVDNIQENVLTLLKQFYQ-QPLFITHRLDVATEGLLVFAKTKEQQSKINSAFESGLTKKFYRALVHGQELPTGRWLHYMQPSPRAPK 203          
BLAST of jgi.p|Trimin1|172326 vs. uniprot
Match: UPI0019C611DE (RluA family pseudouridine synthase n=1 Tax=Moraxellaceae bacterium TaxID=1889775 RepID=UPI0019C611DE)

HSP 1 Score: 96.7 bits (239), Expect = 1.040e-20
Identity = 58/177 (32.77%), Postives = 88/177 (49.72%), Query Frame = 0
Query:   25 QVLVDVLGVDESRARYIIVFGGFYLMPPGDVKARRVSDPTHAMTKGQYMRIHPMPRQYPVCATTDWDASVLQENDWCMLVNKPAAVPSHPTVDNLHHNVVACLKPLRPGTQISAAHRLDVATSGLIVMCKRPSFMTAFSALHAAGAISKRYTALLRLPHVPLGVLTHYMMRSSCAPK 201
            ++L D L ++  +   ++  G  Y+      K   +         G  +RIH  PR+Y      DW++ V+ END+C+++NKP+ +PSHPT DN   N +  +   R  T +   HRLD  TSGLIV  K+ SF+ +F+       + K Y AL+         LTHYM  +   PK
Sbjct:   21 EILYDHLHINSKQFEMLLKLGAIYIDSQRQTKDGWI-------LSGSLLRIHTSPRRYKT--DYDWNSLVIFENDFCLVLNKPSGIPSHPTADNALENALTQMGLTRK-TTLFITHRLDTLTSGLIVYGKKQSFVKSFNIQLQKRLVKKNYVALIETTSKIPNRLTHYMSPALGVPK 187          
BLAST of jgi.p|Trimin1|172326 vs. uniprot
Match: UPI0019A26861 (RluA family pseudouridine synthase n=1 Tax=Bdellovibrionaceae bacterium TaxID=2026715 RepID=UPI0019A26861)

HSP 1 Score: 87.8 bits (216), Expect = 2.350e-17
Identity = 60/195 (30.77%), Postives = 93/195 (47.69%), Query Frame = 0
Query:    7 GYSEYARHAYAPSDAAAWQVLVDVLGVDESRARYIIVFGGFYLMPPGDVKARRVSDPTHAMTKGQYMRIHPMPRQYPVCATTDWDASVLQENDWCMLVNKPAAVPSHPTVDNLHHNVVACLKPLRPGTQISAAHRLDVATSGLIVMCKRPSFMTAFSALHAAGAISKRYTALLRLPHVPLGVLTHYMMRSSCAPK 201
            G+    +H   P   +   ++ ++L   ES    ++  G  Y+        R V + T  + + Q +R+H  PR++      DW   ++ E D  +L+NKPA VPSHP+VDN+  N +  L   R   ++   HRLD  T GLIV  K  +F+  F+   +   I K+Y AL+         + HYM  S  APK
Sbjct:    9 GFEYGVKHFINPKSGSLLNLISEILDKPESEVSDLLKLGAVYVN-----NVRHVENST--INENQTLRVHTKPRRFN--CEYDWSQRIVFECDDFILLNKPAGVPSHPSVDNVLDNSLFKLSEARQ-VKLHITHRLDTMTEGLIVYGKTLAFVKNFNFQMSQRQIEKKYVALIETKQTLPEKIIHYMEPSPRAPK 193          
BLAST of jgi.p|Trimin1|172326 vs. uniprot
Match: K7PEZ7_9BACT (Pseudouridine synthase n=1 Tax=uncultured bacterium TaxID=77133 RepID=K7PEZ7_9BACT)

HSP 1 Score: 86.3 bits (212), Expect = 9.900e-17
Identity = 60/189 (31.75%), Postives = 92/189 (48.68%), Query Frame = 0
Query:   14 HAYAPSDAAAWQVLVDVLGVDESRARYIIVFGGFYLMPPGDVKARRVSDPTHAMTKGQYMRIHPMPRQYPVCATTDWDASVLQENDWCMLVNKPAAVPSHPTVDNLHHNVVACLKPLRPGTQISAAHRLDVATSGLIVMCKRPSFMTAFSALHAAGAISKRYTALLRL-PHVPLGVLTHYMMRSSCAPK 201
            H  A       + LV   G+       ++ FG  Y       + R+  D   A++ GQY+R+H  P+++PV    DW  +++  +   ++VNKPA +P H T+DN   N++  L+ +  G  +    RLD   SGLIV+ +   F   F+ L A   + KRY AL+   P V  G   HYM  S  +PK
Sbjct:   13 HYVAKEATTLVECLVQHFGLTTEEGERLVSFGSVY-------QDRQRVDSDRALSPGQYIRVHLNPKRFPV-EGIDWATTIVHRDKAFVVVNKPAGIPVHATLDNQVENLLHQLR-VALGGALYVTQRLDTDVSGLIVVARTQEFQRQFNRLLADRKLKKRYRALVTTAPEV--GRHIHYMEPSERSPK 190          
BLAST of jgi.p|Trimin1|172326 vs. uniprot
Match: A0A3T0RN96_9PROT (RluA family pseudouridine synthase n=1 Tax=Bdellovibrio sp. qaytius TaxID=1916293 RepID=A0A3T0RN96_9PROT)

HSP 1 Score: 85.9 bits (211), Expect = 1.180e-16
Identity = 49/129 (37.98%), Postives = 70/129 (54.26%), Query Frame = 0
Query:   73 MRIHPMPRQYPVCATTDWDASVLQENDWCMLVNKPAAVPSHPTVDNLHHNVVACLKPLRPGTQISAAHRLDVATSGLIVMCKRPSFMTAFSALHAAGAISKRYTALLRLPHVPLGVLTHYMMRSSCAPK 201
            +R+H  PR+Y    T  W + ++ END+C+++NKP+ +PSHP+VDNL  N +     L     +   HRLD  TSGLIV  K+ SF  +F+         K+Y AL+         LTHYM  +   PK
Sbjct:   62 IRVHLKPRRYN--CTYPWKSLIVFENDFCLVLNKPSGIPSHPSVDNLIENALTQTS-LAKKIPLFVTHRLDTLTSGLIVYAKKQSFAKSFNIQLQERTTRKKYVALIESTQKLPPRLTHYMNPAPGRPK 187          
BLAST of jgi.p|Trimin1|172326 vs. uniprot
Match: K8F2Q6_9CHLO (PseudoU_synth_2 domain-containing protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F2Q6_9CHLO)

HSP 1 Score: 82.0 bits (201), Expect = 8.960e-15
Identity = 58/183 (31.69%), Postives = 90/183 (49.18%), Query Frame = 0
Query:   29 DVLGVDESRARYIIVFGGFYL---------MPPGDVK--ARRV-SDPTHAMTKGQYMRIHPMPRQYPVCATTDWDASVLQENDWCMLVNKPAAVPSHPTVDNLHHNVVACL-KPLRPG-------TQISAAHRLDVATSGLIVMCKRPSFMTAFSALHAAGAISKRYTALLRLPHVPLGVLTH 191
            ++  V E   + +I FG  Y+         + P  VK   +R+ SD         Y+R H  PR++     T W   +L+E D  ++V KP+ +P  P+VDN   NV+ C+   LR G       T++   HRLDV TSG++V+ K     + FS +   G + K+Y AL   P   +G++TH
Sbjct:   91 EITDVTERYFQALIEFGAVYISDELEEDFQLEPNTVKHKMKRIRSDVILPAGSRHYVRAHVNPRRFLAAGETRWMDCILKETDDFVVVMKPSGLPVSPSVDNAKENVLRCVWSALRVGNENDDEATKLFPTHRLDVTTSGVVVVAKNSKAASIFSKILRDGFVEKQYLALTENP-AKIGLMTH 272          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172326 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C7F4_9STRA5.830e-150100.00Pseudouridine synthase (Fragment) n=1 Tax=Tribonem... [more]
A0A6H5JA94_9PHAE3.000e-3041.89PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
D7G4K2_ECTSI1.900e-2940.94Putative RNA pseudouridylate synthase n=1 Tax=Ecto... [more]
A0A7S0TTK8_HEMAN2.330e-2434.25Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A2H0WDZ0_9PROT1.490e-2133.50RluA family pseudouridine synthase n=1 Tax=Bdellov... [more]
UPI0019C611DE1.040e-2032.77RluA family pseudouridine synthase n=1 Tax=Moraxel... [more]
UPI0019A268612.350e-1730.77RluA family pseudouridine synthase n=1 Tax=Bdellov... [more]
K7PEZ7_9BACT9.900e-1731.75Pseudouridine synthase n=1 Tax=uncultured bacteriu... [more]
A0A3T0RN96_9PROT1.180e-1637.98RluA family pseudouridine synthase n=1 Tax=Bdellov... [more]
K8F2Q6_9CHLO8.960e-1531.69PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10Pseudouridine synthasecoord: 93..201
e-value: 1.9E-16
score: 62.4
NoneNo IPR availablePIRSRPIRSR606225-1PIRSR606225-1coord: 88..179
e-value: 8.9E-16
score: 54.7
NoneNo IPR availablePANTHERPTHR21600MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASEcoord: 78..180
NoneNo IPR availablePANTHERPTHR21600:SF56TRNA PSEUDOURIDINE SYNTHASE Ccoord: 78..180
IPR006145Pseudouridine synthase, RsuA/RluA-likePFAMPF00849PseudoU_synth_2coord: 102..183
e-value: 3.6E-13
score: 49.9
IPR006145Pseudouridine synthase, RsuA/RluA-likeCDDcd02869PseudoU_synth_RluA_likecoord: 104..180
e-value: 8.32784E-15
score: 67.3625
IPR006224Pseudouridine synthase, RluC/RluD, conserved sitePROSITEPS01129PSI_RLUcoord: 139..153
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 88..185

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_91contigContig_91:491433..492206 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|172326mRNA_13522Tribonema minus UTEX_B_3156 mRNAContig_91 491433..492206 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|172326|e_gw1.91.88.1 ID=Trimin1|172326|e_gw1.91.88.1|Name=jgi.p|Trimin1|172326|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=204bp
MTSATWGYSEYARHAYAPSDAAAWQVLVDVLGVDESRARYIIVFGGFYLM
PPGDVKARRVSDPTHAMTKGQYMRIHPMPRQYPVCATTDWDASVLQENDW
CMLVNKPAAVPSHPTVDNLHHNVVACLKPLRPGTQISAAHRLDVATSGLI
VMCKRPSFMTAFSALHAAGAISKRYTALLRLPHVPLGVLTHYMMRSSCAP
KIYR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR006224PsdUridine_synth_RluC/D_CS
IPR020103PsdUridine_synth_cat_dom_sf