Trimin1|171685|e_gw1.84.75.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|171685
Unique NameTrimin1|171685|e_gw1.84.75.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length59
Homology
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: A0A836C8S5_9STRA (DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S5_9STRA)

HSP 1 Score: 108 bits (269), Expect = 7.540e-30
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0
Query:    1 MDEDGXXXXXXXGGVSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 58
            MDEDGXXXXXXXGGVSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR
Sbjct:    1 MDEDGXXXXXXXGGVSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 58          
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: D8LHK5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK5_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 8.450e-22
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 0
Query:   13 GGVSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 58
            GGV+Y+CGDCG+ N IKAKDPIQCR CGYRIMYK RTKRLIQFEAR
Sbjct:   23 GGVTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR 68          
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: A0A0M0JEK0_9EUKA (Poly-histidine-tagged ubiquitin n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JEK0_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 2.050e-20
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0
Query:   13 GGVSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 58
            GG +Y+CGDCG TNEIK KDPI+CR CGYRI+YKMRTK LIQFEAR
Sbjct:   76 GGTAYLCGDCGQTNEIKPKDPIRCRFCGYRILYKMRTKNLIQFEAR 121          
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: A0A7S3VVB3_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3VVB3_9SPIT)

HSP 1 Score: 82.4 bits (202), Expect = 8.290e-19
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 0
Query:   13 GGVSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 58
            GG  Y+CGDCGT N+IKA+DPI+CR CGYRIMYK+RT  LIQFEAR
Sbjct:   84 GGTDYMCGDCGTMNDIKARDPIRCRVCGYRIMYKVRTTNLIQFEAR 129          
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: A0A1Y1WTM2_9FUNG (Uncharacterized protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1WTM2_9FUNG)

HSP 1 Score: 80.1 bits (196), Expect = 1.100e-18
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 0
Query:   15 VSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 58
            ++YICGDCG  NEI+AK+PI+CR CG+RIMYK RTKR++QFEAR
Sbjct:   17 ITYICGDCGVENEIRAKEPIRCRDCGHRIMYKKRTKRMVQFEAR 60          
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: M4B5E7_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4B5E7_HYAAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.750e-18
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 0
Query:   15 VSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 58
            + YICGDCG  N + A+DPI+CR+CGYRIMYK RTKRLIQFEAR
Sbjct:    7 IKYICGDCGIVNYLSARDPIRCRACGYRIMYKARTKRLIQFEAR 50          
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: K3X9M6_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3X9M6_GLOUD)

HSP 1 Score: 79.3 bits (194), Expect = 2.720e-18
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 0
Query:   15 VSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 58
            + YICGDCG  N + A+DPI+CR+CGYRIMYK RTKRLIQFEAR
Sbjct:   25 IKYICGDCGIVNYLSARDPIRCRACGYRIMYKARTKRLIQFEAR 68          
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: A0A3R7GTT7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GTT7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.790e-18
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 0
Query:   15 VSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 58
            + YICGDCG  N + A+DPI+CR+CGYRIMYK RTKRLIQFEAR
Sbjct:   24 IKYICGDCGIVNYLSARDPIRCRACGYRIMYKARTKRLIQFEAR 67          
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: A0A1Y1VGP6_9FUNG (Uncharacterized protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VGP6_9FUNG)

HSP 1 Score: 79.0 bits (193), Expect = 2.930e-18
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 0
Query:   15 VSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 58
            +SYICGDCG  N+I+ K+PI+C+ CGYRIMYK RTKR++QFEAR
Sbjct:   14 ISYICGDCGVENDIRPKEPIRCKECGYRIMYKKRTKRMVQFEAR 57          
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Match: A0A7S3TCH8_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TCH8_EMIHU)

HSP 1 Score: 81.3 bits (199), Expect = 3.040e-18
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 0
Query:   13 GGVSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 58
            GG  Y+CGDCG  N+IK KDPI+CR CGYRIMYK+RTK LIQFEAR
Sbjct:   94 GGTDYMCGDCGHLNDIKPKDPIRCRVCGYRIMYKVRTKNLIQFEAR 139          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171685 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8S5_9STRA7.540e-30100.00DNA-directed RNA polymerases I, II, and III 7.0 kD... [more]
D8LHK5_ECTSI8.450e-2284.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0M0JEK0_9EUKA2.050e-2080.43Poly-histidine-tagged ubiquitin n=1 Tax=Chrysochro... [more]
A0A7S3VVB3_9SPIT8.290e-1976.09Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A1Y1WTM2_9FUNG1.100e-1872.73Uncharacterized protein n=1 Tax=Anaeromyces robust... [more]
M4B5E7_HYAAE1.750e-1875.00Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
K3X9M6_GLOUD2.720e-1875.00Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4... [more]
A0A3R7GTT7_9STRA2.790e-1875.00Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A1Y1VGP6_9FUNG2.930e-1870.45Uncharacterized protein n=1 Tax=Piromyces finnis T... [more]
A0A7S3TCH8_EMIHU3.040e-1876.09Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4SMARTSM00659rpolcxc3coord: 15..58
e-value: 2.5E-23
score: 93.5
IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4PFAMPF03604DNA_RNApol_7kDcoord: 17..48
e-value: 1.5E-16
score: 59.8
NoneNo IPR availableGENE3D2.20.28.30RNA polymerase ii, chain Lcoord: 10..58
e-value: 2.1E-25
score: 89.9
IPR039747DNA-directed RNA polymerases I, II, and III subunit RPABC4PANTHERPTHR12056DNA-DIRECTED RNA POLYMERASES I, II, AND IIIcoord: 14..58
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 15..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_84contigContig_84:64604..65347 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171685mRNA_12092Tribonema minus UTEX_B_3156 mRNAContig_84 64604..65347 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|171685|e_gw1.84.75.1 ID=Trimin1|171685|e_gw1.84.75.1|Name=jgi.p|Trimin1|171685|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=59bp
MDEDGGGGGGSSGGVSYICGDCGTTNEIKAKDPIQCRSCGYRIMYKMRTK
RLIQFEAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006591RNAP_P/RPABC4
IPR039747RPABC4
IPR029040RPABC4/Spt4