Trimin1|171681|e_gw1.84.101.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|171681
Unique NameTrimin1|171681|e_gw1.84.101.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length147
Homology
BLAST of jgi.p|Trimin1|171681 vs. uniprot
Match: A0A836C976_9STRA (Ribosomal protein S13 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C976_9STRA)

HSP 1 Score: 299 bits (765), Expect = 9.410e-103
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
Query:    1 LVVGPDFQHILRILNTNIDGRIKVMYALTKVPGVGRRFSNLICKKAEVDHTKRAGMLTADEIEKLVAIIQNPRQFKVPDWFLNRQRDWKTGKSGQTFAQNIAQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRHQMHKSG 146
            LVVGPDFQHILRILNTNIDGRIKVMYALTKVPGVGRRFSNLICKKAEVDHTKRAGMLTADEIEKLVAIIQNPRQFKVPDWFLNRQRDWKTGKSGQTFAQNIAQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRHQMHKSG
Sbjct:    1 LVVGPDFQHILRILNTNIDGRIKVMYALTKVPGVGRRFSNLICKKAEVDHTKRAGMLTADEIEKLVAIIQNPRQFKVPDWFLNRQRDWKTGKSGQTFAQNIAQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRHQMHKSG 146          
BLAST of jgi.p|Trimin1|171681 vs. uniprot
Match: D8LGL2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGL2_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 1.330e-78
Identity = 115/139 (82.73%), Postives = 126/139 (90.65%), Query Frame = 0
Query:    1 LVVGPDFQHILRILNTNIDGRIKVMYALTKVPGVGRRFSNLICKKAEVDHTKRAGMLTADEIEKLVAIIQNPRQFKVPDWFLNRQRDWKTGKSGQTFAQNIAQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGR 139
            LV+ P+FQHILRILNTNIDGR KV Y+LT + GVGRRF+NLICKKAEVD  KRAG +TADEIEKLVAIIQNPRQFK+PDWFLNRQ+DWKTGK+ Q  +Q I QKLR+DLERLKKIRSHRGIRHYWGVRVRGQHTKTTGR
Sbjct:   43 LVISPEFQHILRILNTNIDGRRKVQYSLTSIRGVGRRFANLICKKAEVDPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISSQTIDQKLRDDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGR 181          
BLAST of jgi.p|Trimin1|171681 vs. uniprot
Match: A0A6H5KYA8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYA8_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 2.360e-77
Identity = 113/139 (81.29%), Postives = 124/139 (89.21%), Query Frame = 0
Query:    1 LVVGPDFQHILRILNTNIDGRIKVMYALTKVPGVGRRFSNLICKKAEVDHTKRAGMLTADEIEKLVAIIQNPRQFKVPDWFLNRQRDWKTGKSGQTFAQNIAQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGR 139
            LV+ P+FQHILRILNTNIDGR KV Y+LT + GVGRRF+NLICKKAEVD  KRAG +TADEIEKLVAIIQ PRQFK+PDWFLNRQ+DWKTG + Q  +Q I QKLR+DLERLKKIRSHRGIRHYWGVRVRGQHTKTTGR
Sbjct:    3 LVISPEFQHILRILNTNIDGRRKVQYSLTSIRGVGRRFANLICKKAEVDPNKRAGEMTADEIEKLVAIIQTPRQFKIPDWFLNRQKDWKTGTTTQISSQTIDQKLRDDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGR 141          
BLAST of jgi.p|Trimin1|171681 vs. uniprot
Match: F0XYV2_AURAN (Uncharacterized protein n=4 Tax=Pelagomonadales TaxID=54409 RepID=F0XYV2_AURAN)

HSP 1 Score: 234 bits (597), Expect = 5.080e-77
Identity = 109/139 (78.42%), Postives = 125/139 (89.93%), Query Frame = 0
Query:    1 LVVGPDFQHILRILNTNIDGRIKVMYALTKVPGVGRRFSNLICKKAEVDHTKRAGMLTADEIEKLVAIIQNPRQFKVPDWFLNRQRDWKTGKSGQTFAQNIAQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGR 139
            LV+ PDFQHILR+LNTNIDGR KVM+ALT +PGVGRRFSN++CKKA VD  KRAG LTADE+EKLVAIIQNP+QFK+P WFLNRQ+D+KTGK  Q FA  + QKLREDLERLKKIR+HRG+RHYWG+RVRGQHTK+TGR
Sbjct:    6 LVISPDFQHILRVLNTNIDGRRKVMFALTSIPGVGRRFSNVVCKKAAVDAHKRAGELTADEVEKLVAIIQNPKQFKIPAWFLNRQKDYKTGKYSQAFANTLQQKLREDLERLKKIRAHRGLRHYWGIRVRGQHTKSTGR 144          
BLAST of jgi.p|Trimin1|171681 vs. uniprot
Match: A0A7S2W682_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W682_9STRA)

HSP 1 Score: 228 bits (580), Expect = 3.600e-74
Identity = 105/139 (75.54%), Postives = 123/139 (88.49%), Query Frame = 0
Query:    1 LVVGPDFQHILRILNTNIDGRIKVMYALTKVPGVGRRFSNLICKKAEVDHTKRAGMLTADEIEKLVAIIQNPRQFKVPDWFLNRQRDWKTGKSGQTFAQNIAQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGR 139
            L+ G DFQHILRILNTNIDGR KVMYA+T + G+GRRF+N+ICKKAE+D +KRAG L  DEIE+LVAIIQNP QF++P WFLNRQ+D KTGK  Q+FA N+ QKLREDLERLKKIR+HRG+RHYWG++VRGQHTKTTGR
Sbjct:   23 LIAGSDFQHILRILNTNIDGRTKVMYAITNIKGIGRRFANIICKKAEIDMSKRAGELKPDEIERLVAIIQNPLQFRIPQWFLNRQKDHKTGKYSQSFANNLEQKLREDLERLKKIRAHRGLRHYWGIKVRGQHTKTTGR 161          
BLAST of jgi.p|Trimin1|171681 vs. uniprot
Match: A0A7S2BE88_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BE88_9STRA)

HSP 1 Score: 227 bits (578), Expect = 3.610e-74
Identity = 105/139 (75.54%), Postives = 123/139 (88.49%), Query Frame = 0
Query:    1 LVVGPDFQHILRILNTNIDGRIKVMYALTKVPGVGRRFSNLICKKAEVDHTKRAGMLTADEIEKLVAIIQNPRQFKVPDWFLNRQRDWKTGKSGQTFAQNIAQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGR 139
            L++ PDFQHILRILNTNIDG  KVM++LT + G+GRRF+NLICKKAEVD  KRAG LT DE+EKLVAIIQNP+QFK+P WFLNRQ+D+KTG+  Q F+ N+  KLREDLERLKKIR+HRG+RHYWG+RVRGQHTKTTGR
Sbjct:    3 LIISPDFQHILRILNTNIDGTRKVMFSLTAITGIGRRFANLICKKAEVDPNKRAGELTQDEVEKLVAIIQNPKQFKIPMWFLNRQKDYKTGRYQQAFSNNLGAKLREDLERLKKIRAHRGLRHYWGIRVRGQHTKTTGR 141          
BLAST of jgi.p|Trimin1|171681 vs. uniprot
Match: A0A6T5XJF3_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6T5XJF3_9STRA)

HSP 1 Score: 222 bits (566), Expect = 2.060e-72
Identity = 103/139 (74.10%), Postives = 124/139 (89.21%), Query Frame = 0
Query:    1 LVVGPDFQHILRILNTNIDGRIKVMYALTKVPGVGRRFSNLICKKAEVDHTKRAGMLTADEIEKLVAIIQNPRQFKVPDWFLNRQRDWKTGKSGQTFAQNIAQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGR 139
            L+ GP+FQHILRILNTN++G+  V++ LTK+ G+GRRF++LICKKAEVD  KRAG LTADEIEKLVAIIQNPRQFK+P WFLNRQ+DWKTGK  Q FAQNIA KLR+D+ER+KKIR+HRG+RH+W +RVRGQHT +TGR
Sbjct:    5 LMQGPEFQHILRILNTNVEGKRNVVFGLTKINGLGRRFADLICKKAEVDVNKRAGELTADEIEKLVAIIQNPRQFKIPTWFLNRQKDWKTGKYSQIFAQNIAAKLRDDIERMKKIRAHRGLRHWWNIRVRGQHTCSTGR 143          
BLAST of jgi.p|Trimin1|171681 vs. uniprot
Match: B7GB86_PHATC (Predicted protein n=4 Tax=Bacillariophyta TaxID=2836 RepID=B7GB86_PHATC)

HSP 1 Score: 222 bits (565), Expect = 2.920e-72
Identity = 103/139 (74.10%), Postives = 125/139 (89.93%), Query Frame = 0
Query:    1 LVVGPDFQHILRILNTNIDGRIKVMYALTKVPGVGRRFSNLICKKAEVDHTKRAGMLTADEIEKLVAIIQNPRQFKVPDWFLNRQRDWKTGKSGQTFAQNIAQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGR 139
            L+ GP+FQHILRILNTN++G+  V++ LTK+PG+GRRFS+LICKKAEVD  KRAG LTADEIEK+VA+IQNPRQFK+P WFLNRQ+D+KTGK  Q FAQNIA KLR+D+ERLKKIR+HRG+RH+W +RVRGQHT +TGR
Sbjct:    5 LMQGPEFQHILRILNTNVEGKRNVVFGLTKIPGIGRRFSDLICKKAEVDVDKRAGELTADEIEKVVAVIQNPRQFKIPLWFLNRQKDFKTGKYSQVFAQNIAAKLRDDIERLKKIRAHRGLRHWWNIRVRGQHTCSTGR 143          
BLAST of jgi.p|Trimin1|171681 vs. uniprot
Match: A0A7S3PSF1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PSF1_9STRA)

HSP 1 Score: 221 bits (564), Expect = 4.900e-72
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0
Query:    1 LVVGPDFQHILRILNTNIDGRIKVMYALTKVPGVGRRFSNLICKKAEVDHTKRAGMLTADEIEKLVAIIQNPRQFKVPDWFLNRQRDWKTGKSGQTFAQNIAQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGR 139
            LVV  DFQHILRILNTNIDGR KVMYALTK+ GVGRRFSN+ICKKAE++ +KRAG L  DE+E+LVAIIQNP QF++P WFLNR++D KTGK  Q F+  + QKLREDLERLKK+R+HRG+RHYWG++VRGQHTKTTGR
Sbjct:    4 LVVSQDFQHILRILNTNIDGRQKVMYALTKIKGVGRRFSNMICKKAEINMSKRAGELQPDEVERLVAIIQNPLQFRIPKWFLNRKKDVKTGKYSQVFSNQLEQKLREDLERLKKMRAHRGVRHYWGIKVRGQHTKTTGR 142          
BLAST of jgi.p|Trimin1|171681 vs. uniprot
Match: A0A7S3JS37_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JS37_9STRA)

HSP 1 Score: 219 bits (558), Expect = 4.740e-71
Identity = 103/139 (74.10%), Postives = 120/139 (86.33%), Query Frame = 0
Query:    1 LVVGPDFQHILRILNTNIDGRIKVMYALTKVPGVGRRFSNLICKKAEVDHTKRAGMLTADEIEKLVAIIQNPRQFKVPDWFLNRQRDWKTGKSGQTFAQNIAQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGR 139
            LVV  DF  ILR+LNTNIDGR +VMYALT +PGVGRRF+N+ CKKA V+  KRAG LT DE+EK+VAIIQNP+QFK+P WFLNRQ+D+KTGK  Q FA  + QKLREDLERLKKIR+HRG+RHYWG+RVRGQHTK+TGR
Sbjct:    8 LVVSQDFSFILRVLNTNIDGRRRVMYALTAIPGVGRRFANIACKKAGVNMEKRAGELTPDEVEKIVAIIQNPKQFKIPSWFLNRQKDYKTGKYQQAFANTLQQKLREDLERLKKIRAHRGLRHYWGIRVRGQHTKSTGR 146          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171681 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C976_9STRA9.410e-103100.00Ribosomal protein S13 n=1 Tax=Tribonema minus TaxI... [more]
D8LGL2_ECTSI1.330e-7882.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYA8_9PHAE2.360e-7781.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
F0XYV2_AURAN5.080e-7778.42Uncharacterized protein n=4 Tax=Pelagomonadales Ta... [more]
A0A7S2W682_9STRA3.600e-7475.54Hypothetical protein n=2 Tax=labyrinthulid quahog ... [more]
A0A7S2BE88_9STRA3.610e-7475.54Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6T5XJF3_9STRA2.060e-7274.10Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
B7GB86_PHATC2.920e-7274.10Predicted protein n=4 Tax=Bacillariophyta TaxID=28... [more]
A0A7S3PSF1_9STRA4.900e-7274.82Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S3JS37_9STRA4.740e-7174.10Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.50coord: 1..78
e-value: 2.1E-32
score: 113.2
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 1..140
NoneNo IPR availablePANTHERPTHR10871:SF340S RIBOSOMAL PROTEIN S18-RELATEDcoord: 1..140
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 12..139
e-value: 5.3E-50
score: 169.1
IPR001892Ribosomal protein S13PIRSFPIRSF002134RPS13p_RPS13a_RPS18e_RPS13ocoord: 5..145
e-value: 2.0E-34
score: 116.4
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 13..139
score: 31.599602
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.1030s ribosomal protein s13, domain 2coord: 91..141
e-value: 1.9E-23
score: 83.9
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 119..132
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 11..139

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_84contigContig_84:4460..6764 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171681mRNA_12080Tribonema minus UTEX_B_3156 mRNAContig_84 4460..6764 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|171681|e_gw1.84.101.1 ID=Trimin1|171681|e_gw1.84.101.1|Name=jgi.p|Trimin1|171681|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=147bp
LVVGPDFQHILRILNTNIDGRIKVMYALTKVPGVGRRFSNLICKKAEVDH
TKRAGMLTADEIEKLVAIIQNPRQFKVPDWFLNRQRDWKTGKSGQTFAQN
IAQKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRHQMHKSG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001892Ribosomal_S13
IPR02743730s_Rbsml_prot_S13_C
IPR018269Ribosomal_S13_CS
IPR010979Ribosomal_S13-like_H2TH