Trimin1|17153|CE17152_106 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|17153
Unique NameTrimin1|17153|CE17152_106
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length113
Homology
BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A835ZJH5_9STRA (Mitochondrial ribosomal protein L27-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJH5_9STRA)

HSP 1 Score: 224 bits (570), Expect = 4.150e-74
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
Query:    1 MPVLGDIARGALRMSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKSIYPRDILQKPNAIFGTENMGHPGPKPALRE 112
            MPVLGDIARGALRMSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKSIYPRDILQKPNAIFGTENMGHPGPKPALRE
Sbjct:    1 MPVLGDIARGALRMSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKSIYPRDILQKPNAIFGTENMGHPGPKPALRE 112          
BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: D8LTR3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR3_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.580e-27
Identity = 49/84 (58.33%), Postives = 67/84 (79.76%), Query Frame = 0
Query:    1 MPVLGDIARGALRMSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKSIY 84
            MP++G+I  G LRMSKY+SK+A KR P+  K GNKNFYKG GA  EG +NS+ +FI+D +K LE++APDL  F+LKPYV+K+++
Sbjct:    1 MPLIGNIVTGGLRMSKYISKSARKRIPMTSKMGNKNFYKGKGATKEGTINSRGRFIVDPEKRLEIIAPDLDGFKLKPYVSKAVW 84          
BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A7S0AF32_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AF32_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.650e-20
Identity = 48/92 (52.17%), Postives = 58/92 (63.04%), Query Frame = 0
Query:    2 PVLGDIARGALRMSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKSI--YPRDILQK 91
            P  G +      MSK+LSK+A KR PL  K   K FYKG GA  EG      KF++DK   LELVAPDLT F+LKPYVA+ +  YP+D+L K
Sbjct:   66 PATGSVGGAVRCMSKFLSKSARKRLPLTTKRAKKGFYKGNGATKEGYFGKGGKFVVDKSLRLELVAPDLTGFKLKPYVAQQVPRYPKDMLPK 157          
BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A7S2KAW4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KAW4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.350e-17
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 0
Query:   14 MSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKSI 83
            MSKYL+KAATKR PL  K   K +YKG GA  EG++ SK KFI D  K L+LV PDL  F+LKPY+A ++
Sbjct:   65 MSKYLTKAATKRLPLTNKKVKKGYYKGNGATVEGRITSKGKFIADPMKKLQLVVPDLEGFKLKPYIASAV 134          
BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A7S4A9E0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A9E0_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.510e-16
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 0
Query:   14 MSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKS 82
            +SKY+SK+A KR PL  K   K +YKG G+  EG+L SK KF+ D  K LEL+APDL  F LKPY+A++
Sbjct:   52 ISKYISKSARKRLPLTTKRAGKGYYKGNGSTKEGRLTSKGKFVSDPKKKLELMAPDLEGFNLKPYIART 120          
BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A7S1ZPW3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZPW3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.950e-16
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 0
Query:   14 MSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPD-LTNFQLKPYVAKSI 83
            MSK+LSK+ATKR PL  K   K +YKGTGAR EGK+ S  +FI+D  K + L+ P+ L  F+LKPY+A+++
Sbjct:   38 MSKFLSKSATKRLPLTSKRARKGYYKGTGARKEGKITSLGRFIVDPTKRMNLIVPENLETFKLKPYIARTV 108          
BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A7S3PW76_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PW76_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-15
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 0
Query:   14 MSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKA-KFILDKDKLLELVAPDLTNFQLKPYVAKSI 83
            MSKY+SKA  KR PL  KH  K +YKG G   EG    +A +F++ KDKLLEL+ PDLT F+LKPY+  ++
Sbjct:   41 MSKYMSKAGAKRLPLSTKHVRKGYYKGKGHNREGSFVGRAGRFVVQKDKLLELMVPDLTGFKLKPYIGNNV 111          
BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A7S2RFS1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFS1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.870e-15
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 0
Query:   15 SKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKS 82
            SKY   A  KR PL  K   K +YKG G RSEG+  SK  F++DK++LLELV PDL  F+LKPYV+++
Sbjct:   33 SKYYGNALRKRLPLSPKRARKGYYKGNGCRSEGRHTSKGGFVVDKNRLLELVVPDLQGFKLKPYVSRA 100          
BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A0L0FN63_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FN63_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 1.220e-13
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 0
Query:   20 KAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKSI 83
            + AT+R  LH K GNKNFYKG GA+S G+L +  K+I    K+   V PDL  F LKPYVAK++
Sbjct:   10 RGATRRVALHPKQGNKNFYKGYGAKSSGRLTTLGKYIKQAHKIPNFVVPDLAGFNLKPYVAKTV 73          
BLAST of jgi.p|Trimin1|17153 vs. uniprot
Match: A0A7S2PDC7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PDC7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.660e-12
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 0
Query:   15 SKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLNSKAKFILDKDKLLELVAPDLTNFQLKPYVAKSI 83
            SK+LSK+A KR PL  K   K + KG G   EG+  SK  F++D  K+L L+ PDL  F+LKPY+A  +
Sbjct:   29 SKFLSKSARKRLPLTSKRAKKGYVKGKGCTREGRNTSKGGFVMDPQKMLTLIIPDLEGFKLKPYIAAGV 97          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|17153 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZJH5_9STRA4.150e-74100.00Mitochondrial ribosomal protein L27-domain-contain... [more]
D8LTR3_ECTSI1.580e-2758.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0AF32_9STRA1.650e-2052.17Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2KAW4_9STRA6.350e-1758.57Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S4A9E0_9STRA3.510e-1655.07Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S1ZPW3_9STRA8.950e-1653.52Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3PW76_9STRA1.400e-1553.52Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2RFS1_9STRA3.870e-1554.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0L0FN63_9EUKA1.220e-1353.13Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A7S2PDC7_9STRA3.660e-1247.83Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019189Ribosomal protein L27/L41, mitochondrialPFAMPF09809MRP-L27coord: 20..82
e-value: 6.6E-18
score: 64.6
IPR019189Ribosomal protein L27/L41, mitochondrialPANTHERPTHR21338MITOCHONDRIAL RIBOSOMAL PROTEIN L41coord: 5..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_132contigContig_132:90764..92762 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|17153mRNA_14427Tribonema minus UTEX_B_3156 mRNAContig_132 90618..92793 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|17153|CE17152_106 ID=Trimin1|17153|CE17152_106|Name=jgi.p|Trimin1|17153|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=113bp
MPVLGDIARGALRMSKYLSKAATKRAPLHRKHGNKNFYKGTGARSEGKLN
SKAKFILDKDKLLELVAPDLTNFQLKPYVAKSIYPRDILQKPNAIFGTEN
MGHPGPKPALRE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019189Ribosomal_L27/L41_mit