Trimin1|170540|e_gw1.74.76.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|170540
Unique NameTrimin1|170540|e_gw1.74.76.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length177
Homology
BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: A0A836C9E6_9STRA (ATP synthase F0 sector subunit C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9E6_9STRA)

HSP 1 Score: 331 bits (848), Expect = 2.000e-114
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query:    1 MGDEATCVTAAQVGGARVRLGLKSARAEAGTNAEWQPTNGEGRGNPGLLLLRNVRCRTACQARARDGRRVFSSAPTVNGEHTRRGLLQKEVSRPCARRQAAACGRTAAGLAVGLGAIGPGIGQGNAAGQAVGIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS 176
            MGDEATCVTAAQVGGARVRLGLKSARAEAGTNAEWQPTNGEGRGNPGLLLLRNVRCRTACQARARDGRRVFSSAPTVNGEHTRRGLLQKEVSRPCARRQAAACGRTAAGLAVGLGAIGPGIGQGNAAGQAVGIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS
Sbjct:    1 MGDEATCVTAAQVGGARVRLGLKSARAEAGTNAEWQPTNGEGRGNPGLLLLRNVRCRTACQARARDGRRVFSSAPTVNGEHTRRGLLQKEVSRPCARRQAAACGRTAAGLAVGLGAIGPGIGQGNAAGQAVGIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS 176          
BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: A0A5B9RIB4_9CHLO (ATP synthase subunit c, chloroplastic n=1 Tax=Microrhizoidea pickettheapsiorum TaxID=2604950 RepID=A0A5B9RIB4_9CHLO)

HSP 1 Score: 114 bits (284), Expect = 6.320e-30
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 0
Query:  108 AGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS 176
            AGLA+GLGAIGPGIGQGNAAGQAV GIARQPEAE KIRGTLLLSLAFMEALTIYGLVVAL+LLFANPF S
Sbjct:   13 AGLAIGLGAIGPGIGQGNAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFVS 82          
BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: K9ZV94_9STRA (ATP synthase subunit c, chloroplastic n=18 Tax=Eustigmatophyceae TaxID=5747 RepID=K9ZV94_9STRA)

HSP 1 Score: 113 bits (283), Expect = 9.210e-30
Identity = 65/71 (91.55%), Postives = 69/71 (97.18%), Query Frame = 0
Query:  107 AAGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS 176
            AAG+AVGL AIGPGIGQGNAAGQAV GIARQPEAE+KIRGTLLLSLAFMEALTIYGLVVALSL+FANPF+S
Sbjct:   13 AAGIAVGLAAIGPGIGQGNAAGQAVEGIARQPEAEDKIRGTLLLSLAFMEALTIYGLVVALSLIFANPFSS 83          
BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: H2EV64_9STRA (ATP synthase subunit c, chloroplastic n=1 Tax=Ulnaria acus TaxID=1436140 RepID=H2EV64_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.610e-29
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 0
Query:  107 AAGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS 176
            AAGL++GL AIGPGIGQGNAAGQAV GIARQPEAE+KIRGTLLLSLAFMEALTIYGLVVAL+LLFANPF S
Sbjct:   12 AAGLSIGLSAIGPGIGQGNAAGQAVEGIARQPEAESKIRGTLLLSLAFMEALTIYGLVVALALLFANPFNS 82          
BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: ATPH_OSTTA (ATP synthase subunit c, chloroplastic n=35 Tax=cellular organisms TaxID=131567 RepID=ATPH_OSTTA)

HSP 1 Score: 110 bits (276), Expect = 1.020e-28
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 0
Query:  108 AGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS 176
            AGLA+GLGAIGPGIGQG AAGQAV GIARQPEAE KIRGTLLLSLAFMEALTIYGLVVAL+L+FANPF S
Sbjct:   13 AGLAIGLGAIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALMFANPFVS 82          
BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: ATPH_DIALT (ATP synthase subunit c, chloroplastic n=8 Tax=Eukaryota TaxID=2759 RepID=ATPH_DIALT)

HSP 1 Score: 110 bits (276), Expect = 1.050e-28
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 0
Query:  107 AAGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS 176
            AAGL+VGL AIGPGIGQG+AAGQA+ GIARQPEAE KIRGTLLLSLAFMEALTIYGLVVALSLLFANPFT+
Sbjct:   12 AAGLSVGLAAIGPGIGQGSAAGQALEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTA 82          
BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: ATPL_TRIEI (ATP synthase subunit c n=50 Tax=Cyanobacteria TaxID=1117 RepID=ATPL_TRIEI)

HSP 1 Score: 110 bits (274), Expect = 2.000e-28
Identity = 66/75 (88.00%), Postives = 67/75 (89.33%), Query Frame = 0
Query:  101 AACGRTAAGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPF 174
            AA    AA LAVGLGAIGPGIGQGNAAGQAV GIARQPEAE KIRGTLLLSLAFMEALTIYGLVV+L LLFANPF
Sbjct:    6 AAASVVAAALAVGLGAIGPGIGQGNAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVSLVLLFANPF 80          
BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: D8G4T8_9CYAN (ATP synthase subunit c n=4 Tax=Cyanobacteria TaxID=1117 RepID=D8G4T8_9CYAN)

HSP 1 Score: 110 bits (274), Expect = 2.000e-28
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 0
Query:  101 AACGRTAAGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPF 174
            AA    AAGLA+GLGAIGPGIGQGNA+GQAV GIARQPEAE KIRGTLLLSLAFME+LTIYGLV+AL LLFANPF
Sbjct:    6 AAASVIAAGLAIGLGAIGPGIGQGNASGQAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVIALVLLFANPF 80          
BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: A0A2W4ZCU0_9CYAN (ATP synthase subunit c n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A2W4ZCU0_9CYAN)

HSP 1 Score: 109 bits (273), Expect = 2.830e-28
Identity = 63/70 (90.00%), Postives = 65/70 (92.86%), Query Frame = 0
Query:  107 AAGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFT 175
            AAGLA+G+G IGPGIGQG AAGQAV GIARQPEAE KIRGTLLLSLAFMEALTIYGLVVAL LLFANPFT
Sbjct:   12 AAGLAIGIGTIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPFT 81          
BLAST of jgi.p|Trimin1|170540 vs. uniprot
Match: A0A2U9NTC3_9STRA (ATP synthase subunit c, chloroplastic n=1 Tax=Astrosyne radiata TaxID=1158023 RepID=A0A2U9NTC3_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.910e-28
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 0
Query:  101 AACGRTAAGLAVGLGAIGPGIGQGNAAGQAV-GIARQPEAENKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFTS 176
            AA    +AGLA+GLG+IGPGIGQGNAAGQAV GIARQPE E+KIRGTLL+SLAFMEALTIYGLV+AL+LLFANPF +
Sbjct:    6 AAASVISAGLAIGLGSIGPGIGQGNAAGQAVDGIARQPEVESKIRGTLLISLAFMEALTIYGLVIALALLFANPFNN 82          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170540 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9E6_9STRA2.000e-114100.00ATP synthase F0 sector subunit C n=1 Tax=Tribonema... [more]
A0A5B9RIB4_9CHLO6.320e-3092.86ATP synthase subunit c, chloroplastic n=1 Tax=Micr... [more]
K9ZV94_9STRA9.210e-3091.55ATP synthase subunit c, chloroplastic n=18 Tax=Eus... [more]
H2EV64_9STRA3.610e-2990.14ATP synthase subunit c, chloroplastic n=1 Tax=Ulna... [more]
ATPH_OSTTA1.020e-2890.00ATP synthase subunit c, chloroplastic n=35 Tax=cel... [more]
ATPH_DIALT1.050e-2890.14ATP synthase subunit c, chloroplastic n=8 Tax=Euka... [more]
ATPL_TRIEI2.000e-2888.00ATP synthase subunit c n=50 Tax=Cyanobacteria TaxI... [more]
D8G4T8_9CYAN2.000e-2885.33ATP synthase subunit c n=4 Tax=Cyanobacteria TaxID... [more]
A0A2W4ZCU0_9CYAN2.830e-2890.00ATP synthase subunit c n=2 Tax=Cyanobacteria TaxID... [more]
A0A2U9NTC3_9STRA2.910e-2880.52ATP synthase subunit c, chloroplastic n=1 Tax=Astr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000454ATP synthase, F0 complex, subunit CPRINTSPR00124ATPASECcoord: 144..169
score: 44.16
coord: 107..126
score: 42.89
IPR000454ATP synthase, F0 complex, subunit CPANTHERPTHR10031ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIALcoord: 106..174
IPR000454ATP synthase, F0 complex, subunit CHAMAPMF_01396ATP_synth_c_bactcoord: 105..169
score: 14.252802
IPR005953ATP synthase, F0 complex, subunit C, bacterial/chloroplastTIGRFAMTIGR01260TIGR01260coord: 116..171
e-value: 1.1E-14
score: 52.2
IPR038662F1F0 ATP synthase subunit C superfamilyGENE3D1.20.20.10F1F0 ATP synthase subunit Ccoord: 98..172
e-value: 4.1E-25
score: 89.7
IPR002379V-ATPase proteolipid subunit C-like domainPFAMPF00137ATP-synt_Ccoord: 107..166
e-value: 1.5E-16
score: 60.4
NoneNo IPR availablePANTHERPTHR10031:SF39ATP SYNTHASE SUBUNIT C, CHLOROPLASTICcoord: 106..174
NoneNo IPR availableCDDcd18183ATP-synt_Fo_c_ATPHcoord: 101..172
e-value: 1.44185E-31
score: 106.849
IPR020537ATP synthase, F0 complex, subunit C, DCCD-binding sitePROSITEPS00605ATPASE_Ccoord: 134..155
IPR035921F/V-ATP synthase subunit C superfamilySUPERFAMILY81333F1F0 ATP synthase subunit Ccoord: 106..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_74contigContig_74:557930..558460 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170540mRNA_10573Tribonema minus UTEX_B_3156 mRNAContig_74 557930..558460 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|170540|e_gw1.74.76.1 ID=Trimin1|170540|e_gw1.74.76.1|Name=jgi.p|Trimin1|170540|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=177bp
MGDEATCVTAAQVGGARVRLGLKSARAEAGTNAEWQPTNGEGRGNPGLLL
LRNVRCRTACQARARDGRRVFSSAPTVNGEHTRRGLLQKEVSRPCARRQA
AACGRTAAGLAVGLGAIGPGIGQGNAAGQAVGIARQPEAENKIRGTLLLS
LAFMEALTIYGLVVALSLLFANPFTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000454ATP_synth_F0_csu
IPR005953ATP_synth_csu_bac/chlpt
IPR038662ATP_synth_F0_csu_sf
IPR002379ATPase_proteolipid_c-like_dom
IPR020537ATP_synth_F0_csu_DDCD_BS
IPR035921F/V-ATP_Csub_sf