Trimin1|169114|e_gw1.62.217.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|169114
Unique Name	Trimin1\|169114\|e_gw1.62.217.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	89

Homology

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BLAST of jgi.p|Trimin1|169114 vs. uniprot
Match: A0A835YN18_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN18_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.150e-62
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query:    1 MSNSSKWVLDTNLRECAVCLREFGTNKPAASNKTHCRYCGGVYCRACCYECLSVPAEDVVQAPQEGPGFDPAAPQRVCVRCAEVSLHQ 88
            MSNSSKWVLDTNLRECAVCLREFGTNKPAASNKTHCRYCGGVYCRACCYECLSVPAEDVVQAPQEGPGFDPAAPQRVCVRCAEVSLHQ
Sbjct:    1 MSNSSKWVLDTNLRECAVCLREFGTNKPAASNKTHCRYCGGVYCRACCYECLSVPAEDVVQAPQEGPGFDPAAPQRVCVRCAEVSLHQ 88

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BLAST of jgi.p|Trimin1|169114 vs. uniprot
Match: D7G093_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G093_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 5.340e-13
Identity = 34/93 (36.56%), Postives = 50/93 (53.76%), Query Frame = 0

Query:    2 SNSSKWVLDTNLRECAVCLREFGTN--KPAASNKTHCRYCGGVYCRACCYECLSVPAEDVVQAPQEGPG----FDPAAPQRVCVRCAEVSLHQ 88
            S S +WV D+ + +C +C   F  N     A  +THCRYCGGV+C  CC + L +P ++VV+ P         FDP   Q+ C  C ++ + Q
Sbjct:    9 SASKRWVDDSEVPQCPLCSNRFEGNFLDITARGRTHCRYCGGVFCTNCCSQELYMPEDEVVRPPPSNKFKSIIFDPTLKQKACRTCVKILIPQ 101

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|169114 vs. uniprot

BLAST of jgi.p|Trimin1|169114 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YN18_9STRA	1.150e-62	100.00	FYVE-type domain-containing protein n=1 Tax=Tribon...	[more]
D7G093_ECTSI	5.340e-13	36.56	FYVE-type domain-containing protein n=1 Tax=Ectoca...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000306	FYVE zinc finger	SMART	SM00064	fyve_4	coord: 2..87 e-value: 1.7E-4 score: 27.7
IPR000306	FYVE zinc finger	PFAM	PF01363	FYVE	coord: 6..83 e-value: 1.7E-12 score: 47.3
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 1..88 e-value: 1.1E-12 score: 49.5
IPR017455	Zinc finger, FYVE-related	PROSITE	PS50178	ZF_FYVE	coord: 10..83 score: 9.797371
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 6..85

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_62	contig	Contig_62:385104..385370 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|169114	mRNA_6511	Tribonema minus UTEX_B_3156	mRNA	Contig_62 385104..385370 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|169114|e_gw1.62.217.1 ID=Trimin1|169114|e_gw1.62.217.1|Name=jgi.p|Trimin1|169114|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=89bp
MSNSSKWVLDTNLRECAVCLREFGTNKPAASNKTHCRYCGGVYCRACCYE
CLSVPAEDVVQAPQEGPGFDPAAPQRVCVRCAEVSLHQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000306	Znf_FYVE
IPR013083	Znf_RING/FYVE/PHD
IPR017455	Znf_FYVE-rel
IPR011011	Znf_FYVE_PHD