Trimin1|169009|e_gw1.61.192.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|169009
Unique Name	Trimin1\|169009\|e_gw1.61.192.1
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	105

Homology

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BLAST of jgi.p|Trimin1|169009 vs. uniprot
Match: A0A836CBL9_9STRA (RNA-binding domain of Hu antigen C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL9_9STRA)

HSP 1 Score: 195 bits (495), Expect = 6.380e-63
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query:    1 NNLIVNYLPHAVSSKRLAELFAPYGAVAHAKVVRDRATGGSLGYGFVRFARAAGAAAAATALDGARVGDKRIRVSAARPSSASIRRCKLHVAGLPVRERLCFSI 104
            NNLIVNYLPHAVSSKRLAELFAPYGAVAHAKVVRDRATGGSLGYGFVRFARAAGAAAAATALDGARVGDKRIRVSAARPSSASIRRCKLHVAGLPVRERLCFSI
Sbjct:    1 NNLIVNYLPHAVSSKRLAELFAPYGAVAHAKVVRDRATGGSLGYGFVRFARAAGAAAAATALDGARVGDKRIRVSAARPSSASIRRCKLHVAGLPVRERLCFSI 104

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BLAST of jgi.p|Trimin1|169009 vs. uniprot
Match: A0A835ZHQ1_9STRA (Hud and Au-rich element of the tumor necrosis factor alpha Rna (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ1_9STRA)

HSP 1 Score: 119 bits (298), Expect = 4.590e-32
Identity = 66/106 (62.26%), Postives = 77/106 (72.64%), Query Frame = 0

Query:    2 NLIVNYLPHAVSSKRLAELFAPYGAVAHAKVVRDRATGGSLGYGFVRFARAAGAAAAA--------TALDGARVGDKRIRVSAARPSSASIRRCKLHVAGLPVRER 99
            NLIVNYLPH++  +RL E+FAP+G +AHAKVVRDRATGGS+GYGFVRFA     A            AL+GARVG K IRVS ARPSS +I+ CKLHVAG+P   R
Sbjct:    2 NLIVNYLPHSLGDRRLVEMFAPHGVIAHAKVVRDRATGGSMGYGFVRFAGPPPPAXXXXXXXXXXIAALNGARVGGKHIRVSLARPSSEAIQNCKLHVAGMPPASR 107

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BLAST of jgi.p|Trimin1|169009 vs. uniprot
Match: D7FVL9_ECTSI (Xel-1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL9_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.120e-19
Identity = 51/95 (53.68%), Postives = 65/95 (68.42%), Query Frame = 0

Query:    1 NNLIVNYLPHAVSSKRLAELFAPYGAVAHAKVVRDRATGGSLGYGFVRFARAAGAAAAATALDGARVGDKRIRVSAARPSSASIRRCKLHVAGLP 95
            NNLI+NYLP  V+   L  +FA +G +AH KVV DR+TG S+GYGFV+F     AAAA  A++G  +  KRI+VS ARPSS  I+  KL+V  LP
Sbjct:  108 NNLIINYLPSHVTEIELRNMFAVHGDLAHVKVVYDRSTGKSMGYGFVKFTTNEAAAAATLAINGMAIDRKRIKVSIARPSSKDIKNSKLYVTNLP 202

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BLAST of jgi.p|Trimin1|169009 vs. uniprot
Match: UPI000FCD10D0 (ELAV-like protein 3 n=1 Tax=Neopelma chrysocephalum TaxID=114329 RepID=UPI000FCD10D0)

HSP 1 Score: 86.7 bits (213), Expect = 3.750e-19
Identity = 50/94 (53.19%), Postives = 63/94 (67.02%), Query Frame = 0

Query:    2 NLIVNYLPHAVSSKRLAELFAPYGAVAHAKVVRDRATGGSLGYGFVRFARAAGAAAAATALDGARVGDKRIRVSAARPSSASIRRCKLHVAGLP 95
            NLIVNYLP ++S + L  LF   G +   K+VRD+ TG SLGYGFV +  A  A  A  AL+G ++  K I+VS ARPSSASIR   L+V+GLP
Sbjct:    8 NLIVNYLPQSMSQEELRSLFGSLGDIESCKLVRDKVTGQSLGYGFVNYVEAGDADRAIGALNGLKLQTKTIKVSYARPSSASIRDANLYVSGLP 101

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BLAST of jgi.p|Trimin1|169009 vs. uniprot
Match: A0A8C3CI78_CAIMO (ELAV like RNA binding protein 3 n=2 Tax=Anatidae TaxID=8830 RepID=A0A8C3CI78_CAIMO)

HSP 1 Score: 85.5 bits (210), Expect = 6.130e-19
Identity = 49/94 (52.13%), Postives = 62/94 (65.96%), Query Frame = 0

Query:    2 NLIVNYLPHAVSSKRLAELFAPYGAVAHAKVVRDRATGGSLGYGFVRFARAAGAAAAATALDGARVGDKRIRVSAARPSSASIRRCKLHVAGLP 95
            NLIVNYLP ++S   L  LF   G +   K+VRD+ TG SLGYGFV +  A  A  A + L+G ++  K I+VS ARPSSASIR   L+V+GLP
Sbjct:    9 NLIVNYLPQSMSQDELRSLFGSLGDIESCKLVRDKVTGQSLGYGFVNYVEAGDADKAISTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLP 102

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BLAST of jgi.p|Trimin1|169009 vs. uniprot
Match: UPI0015A5860B (ELAV-like protein 3 n=1 Tax=Oxyura jamaicensis TaxID=8884 RepID=UPI0015A5860B)

HSP 1 Score: 85.5 bits (210), Expect = 2.230e-18
Identity = 49/94 (52.13%), Postives = 62/94 (65.96%), Query Frame = 0

Query:    2 NLIVNYLPHAVSSKRLAELFAPYGAVAHAKVVRDRATGGSLGYGFVRFARAAGAAAAATALDGARVGDKRIRVSAARPSSASIRRCKLHVAGLP 95
            NLIVNYLP ++S   L  LF   G +   K+VRD+ TG SLGYGFV +  A  A  A + L+G ++  K I+VS ARPSSASIR   L+V+GLP
Sbjct:   82 NLIVNYLPQSMSQDELRSLFGSLGDIESCKLVRDKVTGQSLGYGFVNYVEAGDADKAISTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLP 175

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BLAST of jgi.p|Trimin1|169009 vs. uniprot
Match: UPI0008167984 (ELAV-like protein 4 n=1 Tax=Corvus brachyrhynchos TaxID=85066 RepID=UPI0008167984)

HSP 1 Score: 86.7 bits (213), Expect = 2.290e-18
Identity = 50/94 (53.19%), Postives = 63/94 (67.02%), Query Frame = 0

Query:    2 NLIVNYLPHAVSSKRLAELFAPYGAVAHAKVVRDRATGGSLGYGFVRFARAAGAAAAATALDGARVGDKRIRVSAARPSSASIRRCKLHVAGLP 95
            NLIVNYLP ++S + L  LF   G +   K+VRD+ TG SLGYGFV +  A  A  A  AL+G ++  K I+VS ARPSSASIR   L+V+GLP
Sbjct:   63 NLIVNYLPQSMSQEELRSLFGSLGDIESCKLVRDKVTGQSLGYGFVNYVEAGDADRAIGALNGLKLQTKTIKVSYARPSSASIRDANLYVSGLP 156

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BLAST of jgi.p|Trimin1|169009 vs. uniprot
Match: A0A1I8NCM9_MUSDO (Uncharacterized protein n=1 Tax=Musca domestica TaxID=7370 RepID=A0A1I8NCM9_MUSDO)

HSP 1 Score: 84.3 bits (207), Expect = 3.870e-18
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 0

Query:    2 NLIVNYLPHAVSSKRLAELFAPYGAVAHAKVVRDRATGGSLGYGFVRFARAAGAAAAATALDGARVGDKRIRVSAARPSSASIRRCKLHVAGLP 95
            NLIVNYLP  +S + +  LF  +G V   K++RD+ TG SLGYGFV + +   A  A ++L+G R+ +K I+VS ARPSS SI+   L+V+GLP
Sbjct:   69 NLIVNYLPQTMSQEDIRALFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAISSLNGLRLQNKTIKVSIARPSSESIKGANLYVSGLP 162

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BLAST of jgi.p|Trimin1|169009 vs. uniprot
Match: A0A8K1FZK5_9PASS (Uncharacterized protein n=1 Tax=Zosterops borbonicus TaxID=364589 RepID=A0A8K1FZK5_9PASS)

HSP 1 Score: 87.8 bits (216), Expect = 4.960e-18
Identity = 51/94 (54.26%), Postives = 63/94 (67.02%), Query Frame = 0

Query:    2 NLIVNYLPHAVSSKRLAELFAPYGAVAHAKVVRDRATGGSLGYGFVRFARAAGAAAAATALDGARVGDKRIRVSAARPSSASIRRCKLHVAGLP 95
            NLIVNYLP ++S + L  LF   G +   K+VRDR TG SLGYGFV +  A  A  A  AL+G ++  K I+VS ARPSSASIR   L+V+GLP
Sbjct:  457 NLIVNYLPQSMSQEELRSLFGSLGDIESCKLVRDRVTGQSLGYGFVNYVEAGDADRAIGALNGLKLQTKTIKVSYARPSSASIRDANLYVSGLP 550

[Close]

BLAST of jgi.p|Trimin1|169009 vs. uniprot
Match: A0A1I8H8Z0_9PLAT (Uncharacterized protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8H8Z0_9PLAT)

HSP 1 Score: 85.9 bits (211), Expect = 5.410e-18
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 0

Query:    2 NLIVNYLPHAVSSKRLAELFAPYGAVAHAKVVRDRATGGSLGYGFVRFARAAGAAAAATALDGARVGDKRIRVSAARPSSASIRRCKLHVAGLP 95
            NLI+NYLP  +S + +  LF   G V   K++RD+ATG SLGYGFV F +   AA A  +L+G R+ +K I+VS ARPSS SI+   L+++GLP
Sbjct:   66 NLIINYLPQNMSQEEIKALFGGIGEVESCKLIRDKATGQSLGYGFVNFVQPRDAARAVASLNGLRLHNKTIKVSLARPSSESIKGANLYISGLP 159

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|169009 vs. uniprot

BLAST of jgi.p|Trimin1|169009 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CBL9_9STRA	6.380e-63	100.00	RNA-binding domain of Hu antigen C n=1 Tax=Tribone...	[more]
A0A835ZHQ1_9STRA	4.590e-32	62.26	Hud and Au-rich element of the tumor necrosis fact...	[more]
D7FVL9_ECTSI	2.120e-19	53.68	Xel-1 protein n=1 Tax=Ectocarpus siliculosus TaxID...	[more]
UPI000FCD10D0	3.750e-19	53.19	ELAV-like protein 3 n=1 Tax=Neopelma chrysocephalu...	[more]
A0A8C3CI78_CAIMO	6.130e-19	52.13	ELAV like RNA binding protein 3 n=2 Tax=Anatidae T...	[more]
UPI0015A5860B	2.230e-18	52.13	ELAV-like protein 3 n=1 Tax=Oxyura jamaicensis Tax...	[more]
UPI0008167984	2.290e-18	53.19	ELAV-like protein 4 n=1 Tax=Corvus brachyrhynchos ...	[more]
A0A1I8NCM9_MUSDO	3.870e-18	48.94	Uncharacterized protein n=1 Tax=Musca domestica Ta...	[more]
A0A8K1FZK5_9PASS	4.960e-18	54.26	Uncharacterized protein n=1 Tax=Zosterops borbonic...	[more]
A0A1I8H8Z0_9PLAT	5.410e-18	50.00	Uncharacterized protein n=2 Tax=Macrostomum lignan...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002343	Paraneoplastic encephalomyelitis antigen	PRINTS	PR00961	HUDSXLRNA	coord: 1..15 score: 50.0 coord: 74..91 score: 62.22 coord: 58..73 score: 36.67
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 2..75 e-value: 4.0E-18 score: 76.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 3..73 e-value: 7.8E-17 score: 60.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..79 score: 16.807129
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..88 e-value: 8.0E-22 score: 79.8
None	No IPR available	PANTHER	PTHR10352	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	coord: 2..95
None	No IPR available	PANTHER	PTHR10352:SF9	ELAV-LIKE PROTEIN 4	coord: 2..95
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 2..85

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_61	contig	Contig_61:364088..364402 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|169009	mRNA_8694	Tribonema minus UTEX_B_3156	mRNA	Contig_61 364088..364402 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|169009|e_gw1.61.192.1 ID=Trimin1|169009|e_gw1.61.192.1|Name=jgi.p|Trimin1|169009|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=105bp
NNLIVNYLPHAVSSKRLAELFAPYGAVAHAKVVRDRATGGSLGYGFVRFA
RAAGAAAAATALDGARVGDKRIRVSAARPSSASIRRCKLHVAGLPVRERL
CFSI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002343	Hud_Sxl_RNA
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf