Trimin1|166483|e_gw1.44.80.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|166483
Unique NameTrimin1|166483|e_gw1.44.80.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length64
Homology
BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: A0A835YUX7_9STRA (RECA_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUX7_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.040e-38
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    1 ILSERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGGR 63
            ILSERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGGR
Sbjct:    1 ILSERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGGR 63          
BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: D8LGE7_ECTSI (RECA_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE7_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.800e-15
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 0
Query:    3 SERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGGR 63
            + R  RLSFGC +LDA   GG+ + G+TE+ GEAG GKTQ CLQLLLQA L  E GG+GG+
Sbjct:   70 AARLDRLSFGCPSLDAAFEGGVRVQGVTEIAGEAGAGKTQLCLQLLLQAQLAPEAGGLGGK 130          
BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: A0A6H5KY82_9PHAE (RECA_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY82_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.040e-15
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 0
Query:    3 SERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGGR 63
            + R  RLSFGC +LDA   GG+ + G+TE+ GEAG GKTQ CLQLLLQA L  E GG+GG+
Sbjct:   70 AARLDRLSFGCPSLDAAFEGGVRVQGITEIAGEAGAGKTQLCLQLLLQAQLAPEAGGLGGK 130          
BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: A0A7S3WN57_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WN57_EMIHU)

HSP 1 Score: 74.3 bits (181), Expect = 3.720e-14
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 0
Query:    8 RLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGG 62
            RLS GCA +DA LGGG   HGLTE+ G AGTGKTQ  LQ +LQA LP   GG+GG
Sbjct:   25 RLSTGCARIDACLGGGFDAHGLTEIAGAAGTGKTQLVLQCMLQAQLPPAVGGLGG 79          
BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: A0A6B2LKL6_9EUKA (RECA_2 domain-containing protein n=2 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LKL6_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 1.480e-13
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 0
Query:    8 RLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGG 62
            ++ FGC  LD  + GGLP  G+ EL GEAG+GKTQ  LQLLL  V P  HGG+ G
Sbjct:   10 KVPFGCPVLDGMMRGGLPSQGIIELTGEAGSGKTQLALQLLLSTVAPARHGGLEG 64          
BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: A0A7S0NXI2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NXI2_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 1.550e-13
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 0
Query:    8 RLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGG 62
            +LS GC+ +D+ LGGGL  HGL E+ G++G GKTQ  LQLLL+A LP  +GG+GG
Sbjct:   29 KLSVGCSIIDSMLGGGLDTHGLVEVAGQSGAGKTQLALQLLLRAQLPPPYGGLGG 83          
BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: A0A7S0LJT4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LJT4_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 4.410e-13
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 0
Query:    8 RLSFGCAALDANLGGGLPL-HGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGG 62
            +LS GC  LD  LGGG+   HG+ E+ G++G GK+Q  LQLLL+A LP+EHGG+ G
Sbjct:   27 QLSIGCPILDHLLGGGIETQHGIVEIAGQSGAGKSQLVLQLLLRAQLPIEHGGLAG 82          
BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: UPI0010A4662F (DNA repair protein XRCC3 homolog n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A4662F)

HSP 1 Score: 70.9 bits (172), Expect = 5.210e-13
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 0
Query:    1 ILSERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGV 60
            +L  R  + + GC  LD  L GG+P + +TELV E+G+GKTQFCLQL+L A LP  HGG+
Sbjct:    6 LLQLRTEKCTVGCPVLDRFLAGGIPCNSMTELVAESGSGKTQFCLQLVLSAQLPPSHGGL 65          
BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: A0A4D9B981_SALSN (RAD51-like protein 1 n=6 Tax=Salvia TaxID=21880 RepID=A0A4D9B981_SALSN)

HSP 1 Score: 70.9 bits (172), Expect = 7.940e-13
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 0
Query:    7 GRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGGR 63
            G L  G   LDA L GG+P   +TELVG AG GKTQFCL+L L A LP  HGG+GGR
Sbjct:  115 GHLPTGLKGLDAALCGGIPFGVVTELVGPAGIGKTQFCLKLALLASLPTSHGGLGGR 171          
BLAST of jgi.p|Trimin1|166483 vs. uniprot
Match: A0A196SPG9_BLAHN (DNA repair protein XRCC3-like protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SPG9_BLAHN)

HSP 1 Score: 69.7 bits (169), Expect = 1.320e-12
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 0
Query:    4 ERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGGR 63
            +R+  L+ GC+++D  L GG+PLHG++E+VGEA  GKTQ  +QL + A+LP    GV G+
Sbjct:   18 QRKAFLTTGCSSIDICLKGGIPLHGISEIVGEASAGKTQLAIQLAINAILPCSERGVNGK 77          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166483 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YUX7_9STRA1.040e-38100.00RECA_2 domain-containing protein n=1 Tax=Tribonema... [more]
D8LGE7_ECTSI1.800e-1560.66RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KY82_9PHAE2.040e-1560.66RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S3WN57_EMIHU3.720e-1465.45Hypothetical protein n=2 Tax=Emiliania huxleyi Tax... [more]
A0A6B2LKL6_9EUKA1.480e-1356.36RECA_2 domain-containing protein n=2 Tax=Arcella i... [more]
A0A7S0NXI2_9EUKA1.550e-1358.18Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S0LJT4_9EUKA4.410e-1355.36Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
UPI0010A4662F5.210e-1353.33DNA repair protein XRCC3 homolog n=2 Tax=Prosopis ... [more]
A0A4D9B981_SALSN7.940e-1361.40RAD51-like protein 1 n=6 Tax=Salvia TaxID=21880 Re... [more]
A0A196SPG9_BLAHN1.320e-1248.33DNA repair protein XRCC3-like protein n=1 Tax=Blas... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 8..62
e-value: 6.2E-14
score: 51.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 2..63
e-value: 3.2E-18
score: 68.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..62
NoneNo IPR availablePANTHERPTHR22942:SF63DNA REPAIR PROTEIN RAD57coord: 4..62
NoneNo IPR availablePANTHERPTHR22942RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBERcoord: 4..62
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 5..63
score: 21.714544

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_44contigContig_44:105095..105286 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166483mRNA_9066Tribonema minus UTEX_B_3156 mRNAContig_44 105095..105286 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|166483|e_gw1.44.80.1 ID=Trimin1|166483|e_gw1.44.80.1|Name=jgi.p|Trimin1|166483|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=64bp
ILSERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQ
AVLPVEHGGVGGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR027417P-loop_NTPase
IPR020588RecA_ATP-bd