Trimin1|163767|e_gw1.27.195.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|163767
Unique NameTrimin1|163767|e_gw1.27.195.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length428
Homology
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BLAST of jgi.p|Trimin1|163767 vs. uniprot
Match: A0A835YZT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZT1_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.730e-40
Identity = 406/406 (100.00%), Postives = 406/406 (100.00%), Query Frame = 0 
Query:    1 RWKEALGALRAARAAGTRLNVFVFGAAITAMARSGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYCNGVCYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNAVMDACRRGSDGGAAALQQLXXXXXXXXXXXXXXXXXXXXXXGGGDAQRWQRGMGLLEXXXXXXXXXXXXXXXXXXXXXAAHRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAGVVREAQRLQEVLDELRAARQQRDADADAYRRGGDGARQALRSGAAEQ 406
            RWKEALGALRAARAAGTRLNVFVFGAAITAMARSGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYCNGVCYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNAVMDACRRGSDGGAAALQQLXXXXXXXXXXXXXXXXXXXXXXGGGDAQRWQRGMGLLEXXXXXXXXXXXXXXXXXXXXXAAHRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAGVVREAQRLQEVLDELRAARQQRDADADAYRRGGDGARQALRSGAAEQ
Sbjct:    1 RWKEALGALRAARAAGTRLNVFVFGAAITAMARSGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYCNGVCYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNAVMDACRRGSDGGAAALQQLXXXXXXXXXXXXXXXXXXXXXXGGGDAQRWQRGMGLLEXXXXXXXXXXXXXXXXXXXXXAAHRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAGVVREAQRLQEVLDELRAARQQRDADADAYRRGGDGARQALRSGAAEQ 406
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163767 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YZT1_9STRA1.730e-40100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 360..384
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 382..412
NoneNo IPR availablePANTHERPTHR47936FAMILY NOT NAMEDcoord: 169..374
NoneNo IPR availablePANTHERPTHR47936FAMILY NOT NAMEDcoord: 3..162
coord: 108..273
NoneNo IPR availablePANTHERPTHR47936:SF2SUBFAMILY NOT NAMEDcoord: 169..374
NoneNo IPR availablePANTHERPTHR47936:SF2SUBFAMILY NOT NAMEDcoord: 3..162
coord: 108..273
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 92..126
e-value: 6.8E-7
score: 27.1
coord: 129..160
e-value: 9.8E-4
score: 17.1
coord: 278..309
e-value: 1.9E-5
score: 22.5
coord: 168..202
e-value: 5.4E-6
score: 24.2
coord: 57..90
e-value: 3.1E-6
score: 25.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 168..212
e-value: 3.1E-11
score: 43.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 166..200
score: 11.531345
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 55..89
score: 12.167101
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 274..308
score: 11.246351
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 309..343
score: 9.306201
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 20..54
score: 9.514466
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 125..159
score: 11.081932
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 90..124
score: 11.597113
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 201..236
score: 9.470621
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 166..218
e-value: 5.7E-12
score: 47.6
coord: 219..417
e-value: 4.1E-37
score: 130.2
coord: 1..165
e-value: 2.0E-44
score: 154.2
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 33..154
e-value: 1.1E-10
score: 41.2
coord: 256..377
e-value: 1.8E-8
score: 33.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_27contigContig_27:829024..834591 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163767mRNA_6970Tribonema minus UTEX_B_3156 mRNAContig_27 829024..834591 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|163767|e_gw1.27.195.1 ID=Trimin1|163767|e_gw1.27.195.1|Name=jgi.p|Trimin1|163767|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=428bp
RWKEALGALRAARAAGTRLNVFVFGAAITAMARSGRWSEGVALLDDMAAD
GLQANVVAYNAGIAACARAGRWQEAVALLERMDAAGVAPDKYSFASAMNA
CARAGHAERCLELLREMARRGVVPDEVGYGTAIAACSAGGQWEQAVKLLE
EMRNIGVLPNEASYCNGVCYNAAINACTKAAAWEEANRLLEEMSARGLAP
NERSYNAVMDACRRGSDGGAAALQQLDRMKARGVAPSLRAYTAAIEACGG
GDAQRWQRGMGLLEEMRKAGAAPDTRAYMAAIGACAAHRKWRRAVQLLEE
MREAGVPPDRPCYARAIQACATQSKWERAVSILVDMADRGVPPDEGCYVE
AIRACRGAGVVREAQRLQEVLDELRAARQQRDADADAYRRGGDGARQALR
SGAAEQEEEGAPALATAAAAAAAGGAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long