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Homology
BLAST of jgi.p|Trimin1|158747 vs. uniprot
Match: A0A836CAT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAT2_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.420e-23 Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0
Query: 1 MPASLPPVRDAAISLLRRGRCLSKLTSLSLFDCSNTSLSDSIGELTALTVLTLTNCCQI 59
MPASLPPVRDAAISLLRRGRCLSKLTSLSLFDCSNTSLSDSIGELTALTVLTLTNCCQI
Sbjct: 1 MPASLPPVRDAAISLLRRGRCLSKLTSLSLFDCSNTSLSDSIGELTALTVLTLTNCCQI 59
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR006553 | Leucine-rich repeat, cysteine-containing subtype | SMART | SM00367 | LRR_CC_2 | coord: 382..408
e-value: 460.0
score: 1.6
coord: 453..483
e-value: 460.0
score: 1.6
coord: 69..99
e-value: 210.0
score: 4.2
coord: 261..291
e-value: 46.0
score: 9.3
coord: 213..240
e-value: 100.0
score: 6.8
coord: 309..336
e-value: 240.0
score: 3.8 |
| IPR003591 | Leucine-rich repeat, typical subtype | SMART | SM00369 | LRR_typ_2 | coord: 429..453
e-value: 89.0
score: 5.5
coord: 382..405
e-value: 1.2
score: 18.2
coord: 309..332
e-value: 64.0
score: 6.7
coord: 501..525
e-value: 180.0
score: 3.1
coord: 333..357
e-value: 260.0
score: 1.7
coord: 45..69
e-value: 79.0
score: 5.9
coord: 165..189
e-value: 74.0
score: 6.1
coord: 261..285
e-value: 180.0
score: 3.1 |
| IPR001611 | Leucine-rich repeat | PFAM | PF13855 | LRR_8 | coord: 287..345
e-value: 1.8E-6
score: 27.6 |
| IPR032675 | Leucine-rich repeat domain superfamily | GENE3D | 3.80.10.10 | Ribonuclease Inhibitor | coord: 208..348
e-value: 2.9E-27
score: 97.4 |
| IPR032675 | Leucine-rich repeat domain superfamily | GENE3D | 3.80.10.10 | Ribonuclease Inhibitor | coord: 15..207
e-value: 5.1E-45
score: 155.3
coord: 349..559
e-value: 2.6E-52
score: 179.3 |
| None | No IPR available | PANTHER | PTHR45752 | LEUCINE-RICH REPEAT-CONTAINING | coord: 179..303
coord: 298..423
coord: 347..463
coord: 133..245
coord: 225..374
coord: 415..546
coord: 21..173 |
| None | No IPR available | SUPERFAMILY | 52058 | L domain-like | coord: 275..544 |
| None | No IPR available | SUPERFAMILY | 52058 | L domain-like | coord: 19..344 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Trimin1|158747|e_gw1.7.274.1 ID=Trimin1|158747|e_gw1.7.274.1|Name=jgi.p|Trimin1|158747|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=563bp
MPASLPPVRDAAISLLRRGRCLSKLTSLSLFDCSNTSLSDSIGELTALTV
LTLTNCCQITTLPDSIGKLAALTALNVINCGQITRLPGSINGLTRLTALL
LRRCKQFTGLPDSIGDLAALASLDLNGCGSLAVVPETIGGLSVLTSLDLG
CCSELTRLPVNLGSLTALTTLQLSSCVRLRRLPDSIGGLTALTALDLSDC
SSLQVLPDAVAQLPALAALDLWSCTGITSLPDSIGELTVLTELTLPRCTR
LIRLPDSIKCLTRLTALSLYDCKQLTSLPDSISDLTALASLDLGNCKSLT
AVPEAIGGLSALTALDLSCCSLLTLLPESLGNLTALATLTLHGCRRLQSL
PASVGDLAALTALNLGYCSSLQTLPAGCIGDLTALQTLNLAFMQLTALPE
GVCALATLTHLNMRDCSQLTCLPDAIGELRALAMLDLSSCAALTRLPDGI
GRLRALTQLTLVDCPALTRLPDSIGGLRALAHLTLAECLQLAALPESIGG
LASLTALDLCGCGALTQLPERIGELAALQWIDLTDCCGLRSLPRTLVRVT
QTCEIYRVRTVV* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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