Trimin1|158516|e_gw1.6.11.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|158516
Unique NameTrimin1|158516|e_gw1.6.11.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length113
Homology
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: A0A836CB68_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB68_9STRA)

HSP 1 Score: 248 bits (633), Expect = 1.010e-83
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 112
            MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE
Sbjct:    1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 112          
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: D7G5N9_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5N9_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.140e-43
Identity = 63/112 (56.25%), Postives = 78/112 (69.64%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 112
            MLFCPT G+LLMVE+  +G  RF CQTCPY+HP+    K+T+ + L++K VDD++GG DAW NVDK    C  C +    KEA+F   QLRSADEPMT FYKC +C  RW E
Sbjct:    1 MLFCPTDGSLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIALKKKAVDDIMGGDDAWANVDKTQTTCPFCNN----KEAFFLMVQLRSADEPMTCFYKCTNCKQRWKE 108          
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: A0A397H395_9GLOM (DNA-directed RNA polymerase subunit n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397H395_9GLOM)

HSP 1 Score: 141 bits (355), Expect = 2.640e-41
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQ--GGKVTKALT-LQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCV--DCGFRWNE 112
            MLFCP CGN+L++++ T+G Q F CQTCPYV P+G   G ++ K  T L+RKEVDDVLGG +AW NVD     C  C+ P     AYF Q Q RSADEPM++FYKC   DCGF+WNE
Sbjct:    1 MLFCPCCGNILLIKSHTQGEQSFYCQTCPYVFPIGCRIGQQIYKNRTILKRKEVDDVLGGEEAWKNVDSTDARCPKCEHP----RAYFMQIQTRSADEPMSIFYKCCNHDCGFQWNE 113          
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: U9UHV3_RHIID (DNA-directed RNA polymerase subunit n=8 Tax=Eukaryota TaxID=2759 RepID=U9UHV3_RHIID)

HSP 1 Score: 136 bits (342), Expect = 2.220e-39
Identity = 63/114 (55.26%), Postives = 76/114 (66.67%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCV--DCGFRWNE 112
            MLFCP CGNLL+++  T+G Q F CQTCPYV P+G   +     TL+RKEVDDVLGG + W NVD   V C  C+ P     AYF Q Q RSADEPM++FYKC   +C  +WNE
Sbjct:    1 MLFCPCCGNLLLIQHHTQGEQSFFCQTCPYVFPIGSK-EYKNRTTLKRKEVDDVLGGEEGWKNVDSTEVTCPKCEHP----RAYFMQIQTRSADEPMSIFYKCCNHECQHQWNE 109          
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: A0A397VYQ6_9GLOM (DNA-directed RNA polymerase subunit n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397VYQ6_9GLOM)

HSP 1 Score: 135 bits (341), Expect = 3.560e-39
Identity = 64/117 (54.70%), Postives = 77/117 (65.81%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLG-QGGK--VTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCV--DCGFRWNE 112
            MLFCP CGNLL+++   +G Q F CQTCPY+ P+G +GGK       TL+RKEVDDVLGG + W NVD     C  C+ P     AYF Q Q RSADEPM++FYKC   DC  +WNE
Sbjct:    1 MLFCPCCGNLLLIKTLMQGEQAFYCQTCPYIFPIGGRGGKSLYKNRTTLKRKEVDDVLGGEEGWKNVDSTEARCPKCEHP----RAYFMQIQTRSADEPMSIFYKCCNHDCQHQWNE 113          
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: A0A7S0PIB0_CAFRO (DNA-directed RNA polymerase subunit n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PIB0_CAFRO)

HSP 1 Score: 135 bits (339), Expect = 8.360e-39
Identity = 62/112 (55.36%), Postives = 76/112 (67.86%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 112
            MLFCPTCGN+L++E     G +F C TCPY+  +    K+TK++TL+RK VDDVLGGA AW NVD+    C  C      + AYF Q Q+RSADEPMT FYKCV C  RWN+
Sbjct:   16 MLFCPTCGNMLLIEGGA--GTKFFCTTCPYIQRVTT--KITKSITLERKTVDDVLGGAAAWENVDQTDALCPACGH----RRAYFMQLQIRSADEPMTTFYKCVACSGRWND 119          
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: A0A7S0RJ62_9CHLO (DNA-directed RNA polymerase subunit n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RJ62_9CHLO)

HSP 1 Score: 133 bits (334), Expect = 3.350e-38
Identity = 63/112 (56.25%), Postives = 75/112 (66.96%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 112
            M FCPTCG LLMVE       R+ACQTCPYV+ + +  K+ K   L+ KEVDDVLGG +AW NVD+  V+C  C D G   +AYF Q Q RSADEPMT+FYKC  C  RW +
Sbjct:    2 MTFCPTCGTLLMVEYCELTRLRYACQTCPYVYMIDR--KIVKEHVLETKEVDDVLGGDEAWANVDRTEVSCPKC-DHG---QAYFMQVQTRSADEPMTIFYKCCKCANRWKD 107          
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: A0A1Y1VKS4_9FUNG (DNA-directed RNA polymerase subunit n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1VKS4_9FUNG)

HSP 1 Score: 132 bits (332), Expect = 6.970e-38
Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 0
Query:    3 FCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 112
            FCP+CGN+L+++   +G Q F CQTCPYV P+ +    T+    +RKEVDDVLGGA AW NVD     C  C++   GK A+F Q Q RSADEPMT+FYKC +CGF+W E
Sbjct:    4 FCPSCGNMLLLQLNLQGIQEFYCQTCPYVFPIIR--PQTQVTQFKRKEVDDVLGGAKAWENVDSTEATCPKCEN---GK-AFFMQIQTRSADEPMTIFYKCTECGFQWRE 107          
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: A0A024UTD8_9STRA (DNA-directed RNA polymerase subunit n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UTD8_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.670e-37
Identity = 62/112 (55.36%), Postives = 75/112 (66.96%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 112
            M FCPTCGNLLMVE  +  G RF CQTCPY++ + Q  KV   + LQRK+VDDVLGG +AW NVD+    C  C+      +AYF Q Q+RSADEP T FYKC  C  +WN+
Sbjct:    1 MHFCPTCGNLLMVEPDS-DGMRFCCQTCPYIYKINQ--KVETKVPLQRKKVDDVLGGDEAWENVDQTDTRCPFCEHT----KAYFMQIQIRSADEPSTTFYKCTGCKKQWND 105          
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Match: A0A077ZVQ1_STYLE (DNA-directed RNA polymerase subunit n=2 Tax=Oxytrichidae TaxID=57506 RepID=A0A077ZVQ1_STYLE)

HSP 1 Score: 130 bits (328), Expect = 2.670e-37
Identity = 61/112 (54.46%), Postives = 73/112 (65.18%), Query Frame = 0
Query:    1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 112
            MLFCPTC NLL++E  T    RF C+TCPYV  + Q     K + L+RKEVDDVLGG +AW NVD+    C  C +    K AYF Q Q+RSADEPMT FYKC  C ++W E
Sbjct:    1 MLFCPTCANLLLIEK-THSDFRFFCKTCPYVFVVEQN--FEKKMQLERKEVDDVLGGKEAWENVDQIEAQCPKCNN----KRAYFMQIQIRSADEPMTTFYKCTQCSYQWRE 105          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158516 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CB68_9STRA1.010e-83100.00DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
D7G5N9_ECTSI1.140e-4356.25DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A397H395_9GLOM2.640e-4157.26DNA-directed RNA polymerase subunit n=1 Tax=Divers... [more]
U9UHV3_RHIID2.220e-3955.26DNA-directed RNA polymerase subunit n=8 Tax=Eukary... [more]
A0A397VYQ6_9GLOM3.560e-3954.70DNA-directed RNA polymerase subunit n=2 Tax=Gigasp... [more]
A0A7S0PIB0_CAFRO8.360e-3955.36DNA-directed RNA polymerase subunit n=2 Tax=Cafete... [more]
A0A7S0RJ62_9CHLO3.350e-3856.25DNA-directed RNA polymerase subunit n=1 Tax=Pyrami... [more]
A0A1Y1VKS4_9FUNG6.970e-3854.55DNA-directed RNA polymerase subunit n=3 Tax=Neocal... [more]
A0A024UTD8_9STRA2.670e-3755.36DNA-directed RNA polymerase subunit n=8 Tax=Saprol... [more]
A0A077ZVQ1_STYLE2.670e-3754.46DNA-directed RNA polymerase subunit n=2 Tax=Oxytri... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 69..112
e-value: 1.1E-17
score: 74.7
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 79..110
e-value: 3.2E-17
score: 62.1
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 70..111
score: 12.519539
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 2..55
e-value: 1.1E-9
score: 48.1
IPR001529DNA-directed RNA polymerase, M/15kDa subunitPFAMPF02150RNA_POL_M_15KDcoord: 1..36
e-value: 2.7E-11
score: 43.1
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 1..112
e-value: 8.8E-29
score: 98.2
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..112
NoneNo IPR availableGENE3D2.20.25.10coord: 58..112
e-value: 1.9E-17
score: 64.5
NoneNo IPR availablePANTHERPTHR11239:SF12DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10coord: 1..112
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 47..112
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 3..28
IPR034014Pol III subunit C11, C-terminal zinc ribbonCDDcd10509Zn-ribbon_RPC11coord: 63..112
e-value: 6.46128E-20
score: 74.159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:1394563..1395977 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158516mRNA_2201Tribonema minus UTEX_B_3156 mRNAContig_6 1394563..1395977 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|158516|e_gw1.6.11.1 ID=Trimin1|158516|e_gw1.6.11.1|Name=jgi.p|Trimin1|158516|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=113bp
MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKE
VDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVF
YKCVDCGFRWNE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR001529DNA-dir_RNA_pol_M/15kDasu
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR019761DNA-dir_RNA_pol-M_15_CS
IPR034014Zn_ribbon_RPC11_C