Trimin1|158439|e_gw1.6.158.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|158439
Unique NameTrimin1|158439|e_gw1.6.158.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length117
Homology
BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: A0A835YNP2_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNP2_9STRA)

HSP 1 Score: 209 bits (531), Expect = 4.950e-68
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
Query:    1 MLSAVALTDCAICLAAFEGGDALRRLRCGHAFHGACLQPWVDHHSDCPLCKACIRGGKGEPAVGGXXXXXXXXXXXXXXXXXVPARQSQGVASWLIGRRVFWRARNGRVQTQAAPW 116
            MLSAVALTDCAICLAAFEGGDALRRLRCGHAFHGACLQPWVDHHSDCPLCKACIRGGKGEPAVGGXXXXXXXXXXXXXXXXXVPARQSQGVASWLIGRRVFWRARNGRVQTQAAPW
Sbjct:    1 MLSAVALTDCAICLAAFEGGDALRRLRCGHAFHGACLQPWVDHHSDCPLCKACIRGGKGEPAVGGXXXXXXXXXXXXXXXXXVPARQSQGVASWLIGRRVFWRARNGRVQTQAAPW 116          
BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: A0A835YNZ9_9STRA (RING-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNZ9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.010e-28
Identity = 48/54 (88.89%), Postives = 49/54 (90.74%), Query Frame = 0
Query:    1 MLSAVALTDCAICLAAFEGGDALRRLRCGHAFHGACLQPWVDHHSDCPLCKACI 54
            +LSAV  TDCAICLAAFE GD LRRLRCGHAFHGACLQPWVDHHSDCPLCKA I
Sbjct:    2 VLSAVTQTDCAICLAAFEDGDELRRLRCGHAFHGACLQPWVDHHSDCPLCKASI 55          
BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: A0A7C9E695_OPUST (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9E695_OPUST)

HSP 1 Score: 67.0 bits (162), Expect = 2.150e-11
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:    4 AVALTDCAICLAAFEGGDALRRL-RCGHAFHGACLQPWVDHHSDCPLCKA 52
            AV  TDCA+CLA FEGG+ LR L +C HAFH  C+  W+  H +CPLC+A
Sbjct:   45 AVECTDCAVCLAEFEGGEELRILPKCNHAFHVPCIDTWLKSHINCPLCRA 94          
BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: A0A2P6V372_9CHLO (RING-type domain-containing protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V372_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 3.240e-11
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    9 DCAICLAAFEGGDALRRLRCGHAFHGACLQPWVDHHSDCPLCKACIRGGKG 59
            +C +CL+AFE GD  R L C HAFH ACL PW+  ++ CP+C+A +R G G
Sbjct:  889 ECPVCLSAFEAGDTARELGCRHAFHAACLDPWLRSNALCPVCRADVRAGAG 939          
BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: UPI0011D2B0FA (RING-H2 finger protein ATL80 n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2B0FA)

HSP 1 Score: 65.1 bits (157), Expect = 4.370e-11
Identity = 28/50 (56.00%), Postives = 33/50 (66.00%), Query Frame = 0
Query:    3 SAVALTDCAICLAAFEGGDALRRL-RCGHAFHGACLQPWVDHHSDCPLCK 51
            SA   +DC ICLA F  GD +R L  CGHAFH AC+ PW+  HS CP C+
Sbjct:   31 SAARFSDCTICLAEFADGDEIRVLPHCGHAFHVACIDPWLGSHSSCPSCR 80          
BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: A0A1D1Y203_9ARAE (Putative E3 ubiquitin-protein ligase RHA2B (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Y203_9ARAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.090e-10
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 0
Query:    9 DCAICLAAF-EGGDALRRLRCGHAFHGACLQPWVDHH-SDCPLCKACI 54
            +CA+CL+   EG     RLRCGH FHGACL  WV HH S CPLC+AC+
Sbjct:   90 ECAVCLSKVGEGRGEAWRLRCGHVFHGACLDRWVRHHRSTCPLCRACL 137          
BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: A0A7C9A6H6_OPUST (RING-type E3 ubiquitin transferase n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9A6H6_OPUST)

HSP 1 Score: 67.0 bits (162), Expect = 1.170e-10
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:    4 AVALTDCAICLAAFEGGDALRRL-RCGHAFHGACLQPWVDHHSDCPLCKA 52
            AV  TDCA+CLA FEGG+ LR L +C HAFH  C+  W+  H +CPLC+A
Sbjct:  176 AVECTDCAVCLAEFEGGEELRILPKCNHAFHVPCIDTWLKSHINCPLCRA 225          
BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: A0A804KPQ9_MUSAM ((wild Malaysian banana) hypothetical protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804KPQ9_MUSAM)

HSP 1 Score: 64.3 bits (155), Expect = 1.360e-10
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 0
Query:    9 DCAICLAAFEGGDALRRLRCGHAFHGACLQPWVDH-HSDCPLCKACIRGGKGEPAV 63
            DC +CLA FE    + RL CGH FH ACL+ W+DH H+ CPLC+  +  G  +PAV
Sbjct:   87 DCRVCLARFEPESVVNRLPCGHLFHKACLETWLDHRHATCPLCRTHVLQGV-DPAV 141          
BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: UPI001F5CDDFF (probable E3 ubiquitin-protein ligase XERICO n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CDDFF)

HSP 1 Score: 64.3 bits (155), Expect = 1.630e-10
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0
Query:    3 SAVALTDCAICLAAFEGGDALRRLRCGHAFHGACLQPWVDH-HSDCPLCKACI 54
            +A    DC +CL  FE    + RL CGH FHGACL+ W+D+ H+ CPLC++ I
Sbjct:   86 AAATTPDCRVCLVRFEAEAVVHRLPCGHVFHGACLETWIDYDHATCPLCRSRI 138          
BLAST of jgi.p|Trimin1|158439 vs. uniprot
Match: A0A427AQQ7_ENSVE (RING-type domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427AQQ7_ENSVE)

HSP 1 Score: 65.1 bits (157), Expect = 2.060e-10
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0
Query:    7 LTDCAICLAAFEGGDALRRLRCGHAFHGACLQPWVD-HHSDCPLCKACIRGGKGEPA 62
            L DC +CL+ FE    + RL CGH FH ACL+ W+D HH+ CPLC+  +  G   P+
Sbjct:  144 LADCRVCLSRFELESVVNRLPCGHLFHSACLETWLDYHHATCPLCRTHVLQGDDSPS 200          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|158439 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNP2_9STRA4.950e-68100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YNZ9_9STRA1.010e-2888.89RING-type domain-containing protein (Fragment) n=1... [more]
A0A7C9E695_OPUST2.150e-1158.00RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A2P6V372_9CHLO3.240e-1152.94RING-type domain-containing protein n=1 Tax=Micrac... [more]
UPI0011D2B0FA4.370e-1156.00RING-H2 finger protein ATL80 n=1 Tax=Syzygium oleo... [more]
A0A1D1Y203_9ARAE1.090e-1060.42Putative E3 ubiquitin-protein ligase RHA2B (Fragme... [more]
A0A7C9A6H6_OPUST1.170e-1058.00RING-type E3 ubiquitin transferase n=2 Tax=Opuntia... [more]
A0A804KPQ9_MUSAM1.360e-1051.79(wild Malaysian banana) hypothetical protein n=1 T... [more]
UPI001F5CDDFF1.630e-1049.06probable E3 ubiquitin-protein ligase XERICO n=1 Ta... [more]
A0A427AQQ7_ENSVE2.060e-1047.37RING-type domain-containing protein n=1 Tax=Ensete... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 10..50
e-value: 3.4E-7
score: 39.9
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 9..51
e-value: 6.6E-14
score: 52.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 10..51
score: 12.135206
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 3..57
e-value: 2.9E-17
score: 63.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..90
NoneNo IPR availablePANTHERPTHR45931SI:CH211-59O9.10coord: 8..54
NoneNo IPR availablePANTHERPTHR45931:SF10E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATEDcoord: 8..54
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 9..51
e-value: 1.06421E-16
score: 66.1713
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 9..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_6contigContig_6:951852..952202 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|158439mRNA_2162Tribonema minus UTEX_B_3156 mRNAContig_6 951852..952202 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|158439|e_gw1.6.158.1 ID=Trimin1|158439|e_gw1.6.158.1|Name=jgi.p|Trimin1|158439|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp
MLSAVALTDCAICLAAFEGGDALRRLRCGHAFHGACLQPWVDHHSDCPLC
KACIRGGKGEPAVGGGASAPPPLPPAQQQQQQVPARQSQGVASWLIGRRV
FWRARNGRVQTQAAPW*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD